BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67100.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908256 jgi|Araly1|908256|Al_scaffold_0002_1337 1048 0.0
> Ahg908256 jgi|Araly1|908256|Al_scaffold_0002_1337
Length=702
Score = 1048 bits (567), Expect = 0.0
Identities = 657/702 (94%), Gaps = 0/702 (0%)
Strand=Plus/Plus
Query 68 ATGCGTATGAGTTGTAACGGATGTCGAGTTCTACGAAAAGGCTGCAGTGAAAACTGTAGC 127
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCGTATGAGCTGTAACGGATGTCGAGTTCTTCGAAAAGGCTGCAGTGAAAACTGTAGC 60
Query 128 ATAAGACCTTGTCTTCAATGGATCAAATCCGCTGAATCTCAAGCCAACGCCACCGTCTTC 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAAGACCTTGTCTTCAATGGATCAAATCCGCTGAATCTCAAGCCAACGCCACCGTCTTC 120
Query 188 CTCGCCAAGTTTTATGGCCGTGCGGGGCTCATGAACCTCCTCAACACCGGTCCTGACCAC 247
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 CTCGCCAAGTTCTATGGCCGTGCCGGCCTCATGAACCTCCTCAACACCGGTCCTGACCAC 180
Query 248 CTCCGTCCTGCGATATTTAGATCATTGTTGTACGAAGCATGCGGGAGGATTGTGAATCCG 307
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CTCCGTCCTGGGATATTTAGGTCATTGTTGTACGAAGCATGCGGGAGGATTGTGAACCCG 240
Query 308 ATATACGGATCCGTGGGGTTATTGTGGTCAGGAAACTGGCATCTTTGTCAAGCGGCCGTT 367
||||| ||||| || || ||||||||||| || || ||||||||||||||||| || ||
Sbjct 241 ATATATGGATCAGTCGGTTTATTGTGGTCCGGGAATTGGCATCTTTGTCAAGCTGCGGTC 300
Query 368 GAGGCAGTAATGAGAGGCTCACCCGTGACTCCGATCGCATGCGACGCAGCGGTTACTGGT 427
||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 301 GAGGCCGTGATGAGAGGCTCACCGGTGACTCCGATCGCATGCGACGCGGCGGTTACTGGT 360
Query 428 CAAGCACCTCCTTTTAACAACAAGCTTTGCGACATAAGACACGTGTCAAGCAGGGACGAG 487
||||| ||||||||||| |||||||| || |||||||||||||||||||||| ||| |||
Sbjct 361 CAAGCTCCTCCTTTTAATAACAAGCTCTGTGACATAAGACACGTGTCAAGCAAGGAAGAG 420
Query 488 AACGTTAAGAGACGGAGCCGTGGTGCATGCAAGGAAGAGAGAAACGTGAGGTCTTTGAGT 547
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 AACGTGAAGAGACGGAGCCGTGGTGCATGCAAGGAAGAGAGAAACGTGAGGTCGTTGAGT 480
Query 548 CATGAGTCGTCACTGAGTCACGAGTCACCGGTGTCTTCTGAGGAGACGACGACGGAGGAA 607
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 481 CATGAGTCGTCACTGAGCCACGAGTCACCGGTGTCGTCTGAAGAGACGACGACGGAGGAA 540
Query 608 CCAAAGACTTGGATCGGGCTTGAGCTGACTTTGGGGTTGGAGCCTTTAGCACGTGGAAAT 667
||||||| |||||||||||||||||| |||||||||||||||||| || ||||||| | |
Sbjct 541 CCAAAGAGTTGGATCGGGCTTGAGCTAACTTTGGGGTTGGAGCCTGTATCACGTGGGAGT 600
Query 668 CACGTGGTGGTACCGATGAAGAAAAGAAAGTTAGAGAGGTGTGGCACGTCTGAGGATGAG 727
|||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 601 CACGTGGTTGTGCCGATGAAGAAAAGAAAGTTGGAGAAGTGTGGCACGTCTGAGGATGAG 660
Query 728 GACACGTGTAAGATTGAGCTTGGACTGGTGTGCAGTGAGTGA 769
|||||||||||||||||||| ||||| |||||||||||||||
Sbjct 661 GACACGTGTAAGATTGAGCTAGGACTCGTGTGCAGTGAGTGA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5