BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67110.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475808 jgi|Araly1|475808|fgenesh2_kg.2__938__AT1G67110.1 2791 0.0
> Ahg475808 jgi|Araly1|475808|fgenesh2_kg.2__938__AT1G67110.1
Length=1732
Score = 2791 bits (1511), Expect = 0.0
Identities = 1660/1734 (96%), Gaps = 2/1734 (0%)
Strand=Plus/Plus
Query 1 CAAGGTTGTTCCGTATCTCTCACCAAACCATCTCTTTCTCTCTTTCTCAAAATCTTGTTT 60
||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CAATGTTGTTCCGTATCTCTTACCAAACAATCTCTTTCTCTCTTTCTCAAAATCTTGTTT 60
Query 61 AtttttttAATAAAACAAAGAAATTAAAAAGATGATGGTTACATTAGTACTAAAGTACGT 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 61 ATTTTTTTAATAAAACAAAGAAATT--AAAGATGATGGTTACATTAGTACTAAAGTATGT 118
Query 121 CCTCGTGATAGTCATGACCTTGATATTAAGAGTCCTATACGACTCCATTTGTTGCTACTT 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 CCTCGTGATAGTCATGACCTTGATATTGAGAGTCCTATACGACTCCATTTGTTGCTACTT 178
Query 181 CCTCACACCAAGACGAATCAAGAAGTTTATGGAACGTCAAGGCATCACGGGGCCTAAACC 240
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 179 CCTCACACCAAGACGCATCAAGAAGTTTATGGAACGTCAAGGCATCACCGGCCCTAAACC 238
Query 241 CCGTCTCCTCACCGGAAACATCATTGATATCTCCAAAATGCTCTCTCACTCCGCTTCTAA 300
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 239 CCGTCTCCTTACCGGAAACATCATCGATATCTCCAAAATGCTCTCTCAATCCGCTTCTAA 298
Query 301 CGACTGCTCTTCCATCCACCACAACATCGTCCCACGCCTTCTTCCTCATTACGTCTCTTG 360
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 299 CGACTGCTCCTCCATCCACCATAACATCGTCCCACGCCTTCTTCCTCATTATGTCTCTTG 358
Query 361 GTCCAAACAATATGGGAAGAGATTTATAATGTGGAACGGGACAGAACCGAGACTATGCCT 420
||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 359 GTCCAAACAATATGGAAAGAGATTTATAGTGTGGAACGGGACAGAACCGAGGCTATGTCT 418
Query 421 AACGGAGACCGAGATGATTAAAGAATTGCTAACGAAGCACAATCCGGTCACCGGGAAATC 480
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 419 AACGGAGACGGAGATGATTAAGGAATTGCTAACGAAGCACAATCCGGTCACCGGAAAATC 478
Query 481 ATGGCTGCAACAACAAGGAACTAAAGGGTTTATAGGGCGTGGGCTTCTCATGGCCAACGG 540
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||
Sbjct 479 GTGGCTGCAACAACAAGGAACTAAAGGGTTTATAGGGCGGGGGCTCCTCATGGCTAATGG 538
Query 541 CGAGGCTTGGCACCACCAACGTCACATGGCAGCTCCGGCTTTCACACGTGATAGGCTCAA 600
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 539 CGAGGCTTGGCACCACCAACGCCACATGGCAGCTCCGGCGTTCACACGTGATAGGCTCAA 598
Query 601 AGGATACGCTAAGCATATGGTGGAATGCACGAAGATGATGGCTGAGAGGCTGAGAAAGGA 660
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 AGGATATGCGAAGCATATGGTGGAGTGCACGAAGATGATGGCTGAGAGGCTGAGAAAGGA 658
Query 661 GGTTGGAGAAGAGGTGGAAATTGGTGAGGAGATGCGGCGGCTCACGGCGGATATAATATC 720
|||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 659 GGTTGGGGAAGAGGTGGAGATCGGAGAGGAGATGCGGCGGCTCACGGCGGATATAATATC 718
Query 721 GAGGACGGAATTTGGAAGTAGTTGTGATAAAGGAAAGGAGCTTTTTAGTCTACTCACTGT 780
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 GAGGACGGAGTTTGGAAGTAGTTGTGACAAAGGAAAGGAGCTTTTTAGTCTACTCACTGT 778
Query 781 ACTTCAACGTCTTTGTGCTCAAGCCACTCGCCACCTCTGTTTTCCCGGTAGCCGGTTTCT 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTTCAACGTCTATGTGCTCAAGCCACTCGCCACCTCTGTTTTCCCGGTAGCCGGTTTCT 838
Query 841 ACCTAGCAAATACAATAGAGAAATAAAGTCTCTGAAAACGGAAGTGGAACGTCTTTTGAT 900
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 839 ACCGAGCAAATACAATAGAGAGATAAAGTCTCTTAAAACGGAAGTGGAACGTCTTTTGAT 898
Query 901 GGAGATTATAGACAGCCGAAAAGACAGTGTAGAGATCGGTCGGAGTAGCTCATACGGGGA 960
|||||||||||| ||||||| ||||||||||||||||||||||||||| || || || ||
Sbjct 899 GGAGATTATAGAGAGCCGAAGAGACAGTGTAGAGATCGGTCGGAGTAGTTCCTATGGAGA 958
Query 961 TGACCTCTTAGGGCTTCTTTTGAACCAGATGGATAGCAACAAGAACAACCTTAATGTTCA 1020
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 TGACCTCTTAGGGCTTCTATTGAACCAGATGGATCGCAACAAGAACAACCTTAATGTTCA 1018
Query 1021 AATGATAATGGATGAGTGCAAGACTTTCTTCTTTACCGGTCATGAGACAACCTCTCTTCT 1080
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1019 AATGATAATGGATGAGTGCAAGACTTTCTTCTTCACCGGTCATGAGACAACCTCTCTTCT 1078
Query 1081 CCTCACGTGGACTCTCATGCTCCTTGCTCATAATCCCACTTGGCAGGACAATGTCCGCGA 1140
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1079 CCTCACGTGGACTCTCATGCTCCTTGCTCATAATCCCACATGGCAGGACAAGGTCCGCGA 1138
Query 1141 TGAGGTCCGGCAAGTTTGTGGCCAAGATGGTGTCCCTTCCGTTGAACAGCTCTCAAGTCT 1200
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 TGAGGTCAGGCAAGTTTGTGGCCAAGATGGTGTCCCCTCCGTTGAACAGCTCTCAAGTCT 1198
Query 1201 TACTTCGTTAAACAAAGTGATAAACGAGTCATTAAGACTTTACCCTCCTGCCACACTTTT 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1199 TACTTCGTTAAACAAAGTGATAAACGAGTCACTAAGACTTTACCCTCCTGCTACTCTTTT 1258
Query 1261 ACCAAGAATGGCATTTGAAGACATAAAACTAGGTGACCTAATCATCCCTAAAGGTTTATC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCAAGAATGGCATTTGAAGACATAAAACTAGGTGACCTAATCATCCCTAAAGGTTTATC 1318
Query 1321 TATTTGGATCCCTGTCCTTGCGATCCATCATAGTAATGAATTATGGGGCGAAGATGCGAA 1380
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1319 TATATGGATCCCTGTCCTTGCTATCCATCATAGTAAAGAATTATGGGGCGAAGATGCGAA 1378
Query 1381 CGAGTTCAACCCTGAACGATTTACTACTAGAAGTTTTGCATCTAGTCGCCATTTTATGCC 1440
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1379 CGAGTTCAACCCTGAACGATTTACGACTAGAAGTTTTGCATCTAGTCGCCATTTCATGCC 1438
Query 1441 TTTTGCGGCTGGACCTAGGAACTGCATTGGCCAGACTTTTGCCATGATGGAGGCGAAGAT 1500
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 TTTTGCAGCTGGACCTAGGAACTGCATTGGCCAGACTTTTGCGATGATGGAGGCGAAGAT 1498
Query 1501 AATATTAGCAATGCTTGTTTCCAAATTCAGTTTTGCAATATCGGAGAACTATAGACATGC 1560
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1499 AATATTAGCAATGCTTGTTTCCAAATTCAGTTTCGCAGTATCGGAGAACTATAGACATGC 1558
Query 1561 TCCTATAGTTGTGCTTACTATAAAACCTAAGTATGGAGTTCAATTAGTTTTGAAGCCACT 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCCTATAGTTGTGCTTACTATAAAACCTAAGTATGGAGTTCAATTAGTTTTGAAGCCACT 1618
Query 1621 TGATCTATGAAGGGAGAATTATCTAGTTAAGCTTCCTGAGAGAGTACTTATTTTTGAGTG 1680
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGATCCGTGAAGGGAGACTTATCTAGTTAAGCTTCCTGAGAGAGTACTTATTTTTGAGTG 1678
Query 1681 ACATGAGGGATTTGTAACTGAAACGATTTTGAAATGAGTATAATAAAGAGTTTT 1734
||||||||||||||||| ||||||||||||| |||||||||||| |||||||||
Sbjct 1679 ACATGAGGGATTTGTAATTGAAACGATTTTGTAATGAGTATAATGAAGAGTTTT 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5