BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67130.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046 337 1e-91
Ahg336237 jgi|Araly1|336237|fgenesh1_pg.C_scaffold_1002802 113 2e-24
Ahg922213 jgi|Araly1|922213|scaffold_103494.1 75.0 1e-12
Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771 73.1 4e-12
> Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046
Length=1011
Score = 337 bits (182), Expect = 1e-91
Identities = 350/425 (82%), Gaps = 36/425 (8%)
Strand=Plus/Plus
Query 628 GATCTCGAGAAAGAGGAATGGTC-GAAGTATGCCTACACTTTGAAGCCTGATAATAATGT 686
||||| |||||| | |||||||| ||| |||||||||||||||||| ||||||||| ||
Sbjct 490 GATCTTGAGAAAAATGAATGGTCGGAA-TATGCCTACACTTTGAAGGCTGATAATAGCGT 548
Query 687 TGTTAAGGTTAATTATAATCTTTCCT-TTGTTGGGGTTACTACTAGAGGTGAAATTGTTT 745
||||||||||| || ||||||| || |||||||||| ||| ||||||||||||||||||
Sbjct 549 CGTTAAGGTTAACTACAATCTTT-CTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGTTT 607
Query 746 TGGCGAAG-ATGTATGCATGTAAACCGTTTTATGTTTTCTACTATAATCCCGAAAATAAC 804
|||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 608 TGGCCAAGCA-GTATGCATGTAAACCGTTTTATGTTTTCTACTTTAATCCCGAAAGGAAC 666
Query 805 ACTCTCTTAAGTGTTGAAATTCAAGGTGTTGGAGAAGACTCTGAATGGTTTAGCAATTAT 864
|||||| ||||||||||||| |||||||||||||||||| | | | || |
Sbjct 667 ACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAGAAGAC-C--A-T-----AG-A----- 711
Query 865 CAGAGAGTCTACGTCTTTGTAGAACATGTGAAGGATCTTCATCAGTTTGATAATACGAAG 924
| ||| ||||||||| || |||||| |||||||||||||||||||||||| ||||
Sbjct 712 --G----TCTGCGTCTTTGTTGACCATGTGGAGGATCTTCATCAGTTTGATAATATGAAG 765
Query 925 ACATCTATAAACCTACCAGAACAGAAGCGTAAACCCACAAGCATATCAA--T-A---TCA 978
|||||||||| ||||||| ||||||||| |||||||||||||| ||||| | | |||
Sbjct 766 ACATCTATAAGCCTACCACAACAGAAGCTTAAACCCACAAGCACATCAACATCAACATCA 825
Query 979 TCTAAATATGATGATCATGTTAGGACGACACTGATATCATCTAGAAAAAATCAGCAAGTG 1038
|||||| | || |||| || | |||| | ||||| |||||||||| |||| |||| |
Sbjct 826 TCTAAAAACAATCATCAAGTGATGACGTC---GATATTATCTAGAAAATATCATCAAGCG 882
Query 1039 ACGAC 1043
| |||
Sbjct 883 AGGAC 887
Score = 291 bits (157), Expect = 1e-77
Identities = 228/260 (88%), Gaps = 14/260 (5%)
Strand=Plus/Plus
Query 376 GGGTTTGACCCGAT-TGGCAAGCAATTCAAGGTTTTGGTTCTT-AAC-ATTCTAGACAAT 432
|||||||| ||||| | ||||||||||||||||||||| |||| ||| || || |||| |
Sbjct 112 GGGTTTGATCCGATAT-GCAAGCAATTCAAGGTTTTGG-TCTTAAACAATCCT-GACATT 168
Query 433 CATTATATTCTGACATTAGGAAC-AGAAAATGAT-AAGTGGAGGAGTATCCAAAGTTCCT 490
|| ||||||||||||||||||| | |||||| | | |||||||||||| ||| ||||||
Sbjct 169 CAGCATATTCTGACATTAGGAACTA-AAAATG-TGAGGTGGAGGAGTATGCAACGTTCCT 226
Query 491 TAAGGTATCG-TCCTTGTGGGCAAAGCCCGATATGCATTAATGGAGTTTTGTATTACATA 549
|||||||| | |||| ||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 227 TAAGGTAT-GTTCCTCGTGAGCAAAGGCCGATATGCATTAATGGGGTTTTGTATTACATA 285
Query 550 GCTTACGA-TACACAGGACAGCTCGAATGATGTGATAGGTTGTTTTGATGTTAGGTTTGA 608
|||||||| | |||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 286 GCTTACGACT-TGCAGGACAGCTCGTATGATGTGATAGGTTGCTTTCATGTTAGGTTTGA 344
Query 609 GAAATTCAAGTTTTTCCATG 628
||||||||||||||| ||||
Sbjct 345 GAAATTCAAGTTTTTACATG 364
Score = 167 bits (90), Expect = 2e-40
Identities = 109/118 (92%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 1014 ATCATCTAGAAAAAATCAGCAAGTGACGACTGTTTCTCGCCCGCAACAAGATCGGCGTAC 1073
|||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||| ||||
Sbjct 894 ATCATCTAGAAAAAATCATCAACTGAGGACTGTTTCTCACCCGCAACAAGATCGGTGTAC 953
Query 1074 AACTAACAAATTTAGTGCTCTGTGTCTTTTAG-TGATGAAGAATTCTCAGGTGTCTAA 1130
|| ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 954 AAGTAACAAATTTAGTGCTCTGTGTCTTTTAGATGATGATGAATTTTCAGGTGTCTAA 1011
> Ahg336237 jgi|Araly1|336237|fgenesh1_pg.C_scaffold_1002802
Length=912
Score = 113 bits (61), Expect = 2e-24
Identities = 207/271 (76%), Gaps = 35/271 (13%)
Strand=Plus/Plus
Query 376 GGGTTTGACCCGATTGGCAAGCAATTCAAGGTTTTGGTTCT-T-AAC----ATTCTA-GA 428
|||||||| |||||||||||||||||||||||||||| ||| | ||| | || | ||
Sbjct 121 GGGTTTGATCCGATTGGCAAGCAATTCAAGGTTTTGG-TCTATAAACGTAGAGTCGATGA 179
Query 429 -CAA-T-CATTAT---ATTCTGACATTAGGAACAGAAAATGAT-AAGTGGA-GGAGTATC 480
|| | |||| ||||||| ||||||||| |||||| || ||||||| |||| ||
Sbjct 180 TGAATTGGTTTATCAGATTCTGATATTAGGAACTGAAAAT-ATGAAGTGGAGGGAG-AT- 236
Query 481 CA-AAGTTCCTTAAGGTATCG-TCCT-T-G---T-G--GGCAAAGCCCGATATGCATTAA 530
|| | || |||||| ||| | ||| | | | | || || | |||||||| ||
Sbjct 237 CATATGTCCCTTAACCTATGGACCCTATGGTTATCGTTGG-GAA--CATATATGCATCAA 293
Query 531 TGGAGTTTTGTATTACATAGCTTACGATACACAGGACAGCTCGAATGATGTGATAGGTTG 590
||| |||||||||||||||||| | ||| | | || || | ||||| ||||||||||
Sbjct 294 TGGGGTTTTGTATTACATAGCTGATGATCCTGATGA-AG--AGCATGATATGATAGGTTG 350
Query 591 TTTTGATGTTAGGTTTGAGAAATTCAAGTTT 621
||||||||||||||||||||||||||| |||
Sbjct 351 TTTTGATGTTAGGTTTGAGAAATTCAAATTT 381
> Ahg922213 jgi|Araly1|922213|scaffold_103494.1
Length=967
Score = 75.0 bits (40), Expect = 1e-12
Identities = 198/269 (74%), Gaps = 31/269 (12%)
Strand=Plus/Plus
Query 376 GGGTTTGACCCGATTGGCAAGCAATTCAAGGTTTTGGTTCTT-AA-CAT----TCTA-GA 428
|||||||| ||||||||||||||||||||||||||||| ||| || | | || | ||
Sbjct 210 GGGTTTGATCCGATTGGCAAGCAATTCAAGGTTTTGGT-CTTTAAACGTAGAGTCGATGA 268
Query 429 CAA-TCA-TT-AT-AT-TC-TGACATTAGGAACAGAAAATGATAAG-TGGAGG-AGTATC 480
|| | || || || | ||| |||||||||||||||| || || |||||| || | |
Sbjct 269 TAAATTGGTTTATCATATTATGATATTAGGAACAGAAAAT-ATGAGGTGGAGGGAGAA-C 326
Query 481 CAAA-GTTCCTTAAGGTATCGTCCTTGTGGGCAAAGCCCG-A---TAT--GCATTAATGG 533
| | || |||||| ||| | || | ||| | | | | ||| | ||||||||
Sbjct 327 -ATATGTCCCTTAACCTATGGACCCTATGGTTATCGTTGGGAACATATATGTATTAATGG 385
Query 534 AGTTTTGTATTACATAGCTTAC-GATACACAGGACAGCTCGAATGATGTGATAGGTTGTT 592
|| ||||||||||||||| | || | | | || | | |||| ||||||||||||
Sbjct 386 TGTCTTGTATTACATAGCTG-CTGACCCTGATAA-AGAGC-A-TGATATGATAGGTTGTT 441
Query 593 TTGATGTTAGGTTTGAGAAATTCAAGTTT 621
|||||||||||| |||||||||||| |||
Sbjct 442 TTGATGTTAGGTCTGAGAAATTCAAATTT 470
> Ahg336206 jgi|Araly1|336206|fgenesh1_pg.C_scaffold_1002771
Length=2166
Score = 73.1 bits (39), Expect = 4e-12
Identities = 159/211 (75%), Gaps = 32/211 (15%)
Strand=Plus/Plus
Query 428 ACA-ATCATTATATTCTGACATTAGGAAC-AGA-AAATGATAAGTGGAGG-AGTATCCAA 483
||| ||||| ||||| ||||| ||||| | || || ||| || |||||| || ||||||
Sbjct 187 ACAGATCATCATATTTTGACACTAGGAGCTGGAGAATTGA-AA-TGGAGGAAG-ATCCAA 243
Query 484 AGTTCC-TTAAGGT-AT-CGTCCTTGTGGGCAAAGCCCGATATGCATTAATGGAGTTTTG 540
| ||| || | | || | |||| |||| |||| ||||||||||||||||||||||
Sbjct 244 TG-TCCTTTTA-CTCATGAGCCCTTTTGGG-AAAG---GATATGCATTAATGGAGTTTTG 297
Query 541 TATTACAT-AGCTTA-CGATAC--A--C-AG--GACA--GCTCGAATGATGTGATAGGTT 589
|||||| | |||| | | || | | | || || | | || | ||||||||| ||
Sbjct 298 TATTAC-TCAGCTCAAC-ATTCTGATTCTAGTCGAAAAAGGTCT--T-ATGTGATAGTTT 352
Query 590 GTTTTGATGTTAGGTTTGAGAAATTCAAGTT 620
| ||||||||||||| |||||||||||||||
Sbjct 353 GCTTTGATGTTAGGTCTGAGAAATTCAAGTT 383
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 519 GATATGCATTAATGGAGTTTTGTATTAC 546
||||||||||||||||||||||||||||
Sbjct 1503 GATATGCATTAATGGAGTTTTGTATTAC 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5