BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67150.2
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315734 jgi|Araly1|315734|fgenesh1_pm.C_scaffold_2000767 1901 0.0
Ahg315636 jgi|Araly1|315636|fgenesh1_pm.C_scaffold_2000669 80.5 3e-14
> Ahg315734 jgi|Araly1|315734|fgenesh1_pm.C_scaffold_2000767
Length=1239
Score = 1901 bits (1029), Expect = 0.0
Identities = 1173/1243 (94%), Gaps = 8/1243 (1%)
Strand=Plus/Plus
Query 114 ATGGGATCTCAAGACCCTTGTATATACAGAGTGCCAAGCCAGTTGCGTGAAGTGAATCCA 173
|||||||||||||| || || || |||| |||||||||||| |||||||||||||| |||
Sbjct 1 ATGGGATCTCAAGAACCATGCATTTACAAAGTGCCAAGCCAATTGCGTGAAGTGAAACCA 60
Query 174 GAAGCTTATAGACCTCGGATGCTTCTCATCGGCCCTCTTACTCATTCCAAGAAACCTAAA 233
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GAAGCCTATAGACCTCGGATGCTTCTCATCGGCCCTCTTACTCATTCCGCGAAACCTAAA 120
Query 234 GTTCATACGGATTCAAGATGCTTTATTAGGTATCTAGAATATAAGATGATGGAGGACCAA 293
| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCTCATACGGATTCAAGATGCTTGATTAGGTATCTAGAATATAAGATTATGGAGGACCAA 180
Query 294 AAGGTGTTGTACAAAGACGCTTTCACCAAAAGGCTAGATACTGATATTGCTATTCTTGAG 353
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AAGGTGTTGTACAAAGCCGCTTTCACCAAAAGGCTAGATACTGATATTGCAATTCTTGAG 240
Query 354 GATATGAAGACCACCATAAAAGACGAAGAAGTAAATATTCGAGCAAGCTATGCGGTATCG 413
||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 241 GATATGACGACCACCATAAAAGAGGAAGAAGTAAATATTCGGGCAAGTTATGCGGTATCG 300
Query 414 ACTGCATGGATATTATCC-GATATATTCGTGGAGCTTATACTTAACGATTCAATTTTTAT 472
||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 ACTACATGGATATTA-CCTGATATATTCGTGGAGCTTATACTTAACGATTCAATATTTAT 359
Query 473 CGTGGAGTTCATTCTCAGAATGTATGAAAGTCATGAAAAAATTGGTGACATGATTGTGGA 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CGTGGAGTTCATTCTCAGAATGTACGAAAGTCATGAAAAAATTGGTGACATGATTGTGGA 419
Query 533 CAAACCTTTTTACACTTCCACGGTTCTTGATGACCTTACCTTGCTCGAGAATCAGCTTCC 592
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CAAACCTTTTTATACTTCCACGGTTCTTGATGATCTTACCTTGCTCGAGAATCAGCTTCC 479
Query 593 TTACTTCTGTTTAAGTAAGTTGTTAAACCCCATTACAAAGAGATTTTGTGGAGATCAGTC 652
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 480 CTACTTTTGTTTAAGTAAGTTGTTAAACCCCATTACAAAAAGATTTTGTGGAGATCAGAC 539
Query 653 GCTGGACCAAGTCATCCTCCAGTTATTTTCAGTCAATGATAGTGGCATGATCAATGAGAA 712
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GCTGGACCAAGTCATCCTCCAATTATTTTCAGTCAATGATAGTGGTATGATCAATGAGAA 599
Query 713 TACAAAGTTCAATCACTTCACAGATTTATTCCGGTGTGTTTACAAGGAATCACTTGGCCA 772
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TACAAAGTTCAATCACTTCACAGATTTATTCCGGTGTGTTTACAAGGAATCGCTTGGCCA 659
Query 773 GAATCTAGAGTTGAACA-ACTCGAAAAGCCAGATCGTGGATATGAAGAGCGCGAATATGC 831
|||| |||||||| ||| ||||||| |||||||||||||||||||||| |||| ||| ||
Sbjct 660 GAATATAGAGTTG-ACAGACTCGAATAGCCAGATCGTGGATATGAAGAACGCGGATAAGC 718
Query 832 TATAC-AGTGTAGGAGTGGACTTCAAGGTAGTGAAGCGTGAGTATTCACTGAATGTATCA 890
||| | |||||||||||||| || ||||||||||| ||||||| ||| ||||||||||||
Sbjct 719 TAT-CTAGTGTAGGAGTGGAATTTAAGGTAGTGAATCGTGAGTTTTCGCTGAATGTATCA 777
Query 891 TTCGAGGAAGGTTGCTTAATATTGCCGAGTTTTCCTGCCGATGAATCTTCTAATATCATC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCGAGGAAGGTTGCTTAATATTGCCGAGTTTTCCTGCCGATGAATCTTCTAATATCATC 837
Query 951 CTTAGAAATGTCATCGCATATGAGCAATGCCATGATCCTGAAAATGCCTTTACTACAAAT 1010
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 CTTAGAAATGTCATTGCATATGAGCAATGCCATGATCCTGAAAATGCCTTCACTACAAAT 897
Query 1011 TACATAAATTTCATGAATTTCCTTATTACCTCCGATGAAGACGTGGC-TATACTCACTTC 1069
|||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 898 TACATACATTTCATGAATTTCCTTATTACCTCAGATGAAGACGTGGCGT-TACTCACTTC 956
Query 1070 AGCAGGAGTGCTAACAAACGGTGTGGGGCGGTCAAGCATGGTACTGAAGATGGTGAATAA 1129
|||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 957 AGCAGGGGTTCTAACAAACGGTGTAGGGCGATCAAGCATGGTGCTGAAGATGGTGAATAA 1016
Query 1130 CTTAGCTATAGGAGTGTTGCTATCGAATCAGAGCCAATATCACGACATTGTTGAGAAACT 1189
||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 1017 ATTAGCTATAGGAGTGTTGCTATCAAATCAAAGTCAATATCACGACATTGTCGAGAAACT 1076
Query 1190 CAACATTCACCATAGTTCTCGTAGGAAAAGGATATGGGCGAAACTAAGAAAAGTCTACTT 1249
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1077 CAACATTCACCATAATTCTCGTAGGAAAAGAATATGGGCGAAACTCAGAAAAGTCTACTT 1136
Query 1250 CAGCGACTTATGGACGACAACAGCTACGTTAGCTGCCATATCTCTTTTGCTACTGACTCT 1309
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CAGCGACCTATGGACGACAACAGCTACGTTAGCTGCCATATCTCTTTTGCTACTGACTCT 1196
Query 1310 AGCTGGGACAGTGGCTTCCATTTTTCAAGCTATCAAGAGCTAA 1352
|||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 1197 AGCTGGGACAGTGGCTTCTATTATTCAAGCTATCAAGAGTTAA 1239
> Ahg315636 jgi|Araly1|315636|fgenesh1_pm.C_scaffold_2000669
Length=1254
Score = 80.5 bits (43), Expect = 3e-14
Identities = 276/385 (72%), Gaps = 30/385 (8%)
Strand=Plus/Plus
Query 913 TGCCGAGTTTTCCTGCCGATGAAT-CTTCTAATATCATCCTTAGAAATGTCATCGCATAT 971
||| |||||||| ||| || ||| || | |||| | || |||||||| || |||| |
Sbjct 809 TGCTGAGTTTTCGTGCTAATCAATGGTT-TGATATGGTTCTAAGAAATGTAATAGCATTT 867
Query 972 GAGCAATGCCATG-ATC-CTGAAAATGCCTTTACTACAAATTACATAAATTTCATGAATT 1029
||||| ||||||| || || || | |||||||||| || ||| || ||||| | ||||
Sbjct 868 GAGCAGTGCCATGTTTCTCT-AATA-CCCTTTACTACCAACTACGTACATTTCTTAAATT 925
Query 1030 TCCTTATTACCTCCGATGA-AGACGTGGCTATACTCA-CTTCAGCAGGAGTGCTAACAAA 1087
| || ||||| |||||| | |||||| | |||||| | || ||| ||| |||||||
Sbjct 926 TTCTAATTACTTCCGAT-AGAGACGTCGAGGTACTCAGC-GAAGAAGGGGTGGTAACAAA 983
Query 1088 CGGTGTGGGGC-GGTCAAGCATGGTACTGAAGATGGTGAATAACTT--AGCTATAGGAGT 1144
| | | || | ||| ||| |||| || | |||||||| || || || | | || ||
Sbjct 984 CAATATCGGTCGGGT-GAGCTTGGTGGTGGACATGGTGAACAAGTTACAGGT-T-GGTGT 1040
Query 1145 G-TTGCTATCGAATCA-GAGCCAATATC-ACGACATTGTTGAGAAACTCAACA-TTCACC 1200
| | || ||| || |||||| | | |||| | ||| | ||| | | ||||
Sbjct 1041 GAAAG-TAGGGAA-CACCTCCCAATA-CTTCTACATAGCCGAGGATCTC-AGAGCTCACT 1096
Query 1201 ATAGTTCTCGTAGGAAA-AGGAT-ATGGGCGAAACTAAGAAAAGTCTACTTCAGCGACTT 1258
|| ||||| | |||| ||| | ||||||| || |||||||||||||||||||||||
Sbjct 1097 GTAAATCTCG-AAGAAAGAGG-TGTTGGGCGACTCTCAGAAAAGTCTACTTCAGCGACTT 1154
Query 1259 ATGGAC-GACAACAGCTACGTTAGC 1282
|||||| | |||||| || |||||
Sbjct 1155 ATGGACCGG-AACAGCAACTTTAGC 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5