BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67170.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475814 jgi|Araly1|475814|fgenesh2_kg.2__944__AT1G67170.1 2006 0.0
> Ahg475814 jgi|Araly1|475814|fgenesh2_kg.2__944__AT1G67170.1
Length=1508
Score = 2006 bits (1086), Expect = 0.0
Identities = 1393/1534 (91%), Gaps = 49/1534 (3%)
Strand=Plus/Plus
Query 15 Gaaaaaaaaaattcacgccgg-caaaag--aaaag--aaaaaaaaaaCCTTCGCCGTCGT 69
||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1 GAAAAAAGAAATTCACGCCGGTAAAAAGAAAAAAGAAAAAAAAAAAACCTTCGCCGTCGT 60
Query 70 TTGCTTAGTCTTCTTCGCTCTATCCCAACACTCGATCAAATAATC--CCAGTGAGCTTCT 127
|||| || ||||| |||||||||| ||| |||||||||||| ||| | | | | |||
Sbjct 61 TTGC-TACTCTTCGTCGCTCTATCTCAAAACTCGATCAAAT-ATCTTCGA-TTCTCCTCT 117
Query 128 TCCATTCCA-AGTTGATAAGGAATTTGAAGAAGCCTTTG-TTTAATGGAAAGCAAAGGAA 185
| |||| || |||||||||||| ||| ||||| |||| ||| ||||||||||||||||
Sbjct 118 TTCATT-CACAGTTGATAAGGACTTT---GAAGCTTTTGTTTTGATGGAAAGCAAAGGAA 173
Query 186 GAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGGCT-GTATA 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 174 GAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGG-TGGTATT 232
Query 245 GCGCATCCGGAGACTTTCGGTAATCACGGTGCTATACCACCTTCTGCTGCTCAAGGTGTG 304
|| ||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 233 GCACATCCCGAGACTTTTGGTAGTCACGGTGCTATACCGCCTTCTGCTGCTCAAGGTGCA 292
Query 305 TATCCTTCCTTCAACATGTTACCTCCACCTGAAGTTATGGAGCAAAAGTTTGTGGCACAA 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TATCCTTCTTTCAACATGTTACCTCCACCTGAAGTTATGGAGCAAAAGTTTGTGGCACAA 352
Query 365 CACGGGGAATTACAGAGACTTGCTATAGAGAATCAGAGACTTGGTGGAACTCATGGTAGT 424
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 CACGGGGAATTGCAGAGACTTGCTATAGAGAATCAGAGACTTGGTGCAACTCATGGTAGT 412
Query 425 TTAAGACAAGAGTTAGCAGCAGCACAGCATGAAATACAGATGTTGCACGCGCAAATTGGG 484
|||||||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 413 TTAAGACAAGAGCTAGCAGCAGCGCAGCATGAATTGCAGATGTTGCACGCGCAAATTGGG 472
Query 485 TCGATGAAGTCCGAGAGAGAGCAACGGATGATGGGTCTTGCTGAGAAAGTTGCTAAAATG 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 TCGATGAAGTCTGAGAGAGAGCAACGGATGATGGGTCTTGCTGAGAAAGTTGCGAAAATG 532
Query 545 GAGACTGAGCTTCAGAAATCTGAGGCTGTTAAGTTGGAGATGCAACAAGCACGTGCTGAG 604
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 533 GAGACTGAGCTTCAGAAGTCTGAGGCTGTGAATTTGGAGATGCAACAAGCACGTGCTGAG 592
Query 605 GCACGGAGTCTT-GTTGTGGCTAGGGAGGAGCTTATGTCTAAAGTGCATCAGTTGACTCA 663
||||| || ||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 593 GCACGTAG-CTTGGTTGTGGCGAGGGAGGAGCTTATGTCTAAAGTTCATCAGTTGACTCA 651
Query 664 GGAACTTCAAAAATCTCGTTCTGATGTGCAGCAAATACCTGCTCTGATGTCTGAACTTGA 723
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGAACTTCAGAAATCTCGTTCAGATGTGCAGCAAATACCTGCTCTGATGTCTGAACTTGA 711
Query 724 GAATCTAAGACAGGAGTACCAGCAGTGCAGGGCAACATATGACTATGAGAAGAAGTTTTA 783
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 712 GAATTTAAGACAGGAGTACCAGCAGTGCAGGGCAACATATGACTATGAGAAGAAATTTTA 771
Query 784 TAATGACCATCTCGAGTCACTTCAGGCAATGGAGAAGAACTACATGACTATGGCTAGGGA 843
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TAACGACCATCTCGAGTCACTTCAGGCAATGGAGAAGAACTACATGACTATGGCTAGGGA 831
Query 844 AGTTGAAAAACTTCAAGCACAGTTGATGAACAATGCAAATTCAGATAGAAGAGCAGGTGG 903
|||||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||
Sbjct 832 AGTTGAAAAACTTCAAGCACAGTTAATGAACAGTGCAAATTCAGACAGAAGAGCCGGTGT 891
Query 904 CCCTTATGGTAACAACATAAATGCTGAAATTGACGCTTCTGGACATCAGAGTGGAAACGG 963
||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 892 CCCTTATGGTAGCAACATGAATGCTGAAATTGACGCTTCTGGGCATCAGAGTGGAAATGG 951
Query 964 TTATTATGAAGATGCTTTTGGTCCTCAGGGATATATTCCTCAACCAGTAGCTGGTAACGC 1023
||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 952 TTACTATGAAGATGCTTTTGGTCCCCAGGGATATATTCCTCAATCAGTTGCTGGTAACGC 1011
Query 1024 AACTGGACCAAATTCAGTTGTTGGCGCAGCTCAATACCCTTATCAAGGAGTAACTCAGCC 1083
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1012 AGCTGGACCAAATTCAGTTGTTGGCGCAGCTCAATACCCTTATCCAGGAGTAACTCAGCC 1071
Query 1084 AGGATACTTCCCTCAAAGACCCGGTTACAACTTTCCAAGAGGCCCTCCTGGTTCATATGA 1143
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1072 AGGATACTTCCCTCCAAGACCCGGTTACAACTTCCCAAGAGGCCCTCCTGGTTCATATGA 1131
Query 1144 CCCAACAACAAGGTTACCAACAGGACCTTACGGCGCTCCATTCCCACCTGGACCATCTAA 1203
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1132 CCCAACAACAAGGTTACCCACAGGACCTTACGGCGCTCCATTCCCACCTGGACCATCCAA 1191
Query 1204 CAATACTCCTTACGCCGGTACACACGGAAAC--CCTAGTCGCA-GATGAGTCCACCAG-C 1259
|||||||||||||| ||| || | | ||| || || ||| | || || | || |
Sbjct 1192 CAATACTCCTTACG--GGT-CAG-CTGCAACAGCCG-GT-GCACGCGGAAACC-CTAGTC 1244
Query 1260 -TAAGAGTACATATATAAATAACTCACCAGCTACAGATTCCTTCAACTGTGGAATTGTTG 1318
|| || | | || | || | || |||| |||||||||||||||||| ||||
Sbjct 1245 GTA-GA-TG-AGGC-TACC-AGCTAAG-AG-TACATATTCCTTCAACTGTGGAAGTGTTA 1297
Query 1319 CCTGTTTGGTCCCATAATCTTTATGGGTAAAGAGAAGTTGGTACAGTGGTGAACGTTGAG 1378
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1298 CCTGTTTGGTCCCATAATCTT-ATGGGTAAAGAGAAGTTGGTACAGTGGTGAACGTTGAG 1356
Query 1379 TGCTATTGTTTAACTGATTTTGTTG--AGA--G-CTT-GACTT-TTGTGAGACGGTTTTC 1431
|||||||||||| |||||||||||| ||| | ||| || || || ||||| |||||||
Sbjct 1357 TGCTATTGTTTAGCTGATTTTGTTGGGAGATCGACTTAGATTTGTTATGAGAAGGTTTTC 1416
Query 1432 AACAAGTTTTGTGATACAGAGAGATGTAACATCGGGAAAGAAAAAACAAAGAAAGAGAAA 1491
||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||
Sbjct 1417 AACAAGTTTTGTGATAC-GAGAGATGTAAAATCGGGAAAGAAAAAACAAAGGG-GAAAAA 1474
Query 1492 TTTGTTGTTTGCCCTTCACCATTTTGTCTCTATG 1525
||| ||||||||||||||||||||||||||||||
Sbjct 1475 TTTATTGTTTGCCCTTCACCATTTTGTCTCTATG 1508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5