BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67180.1 Length=1450 Score E Sequences producing significant alignments: (Bits) Value Ahg475815 jgi|Araly1|475815|fgenesh2_kg.2__945__AT1G67180.1 1881 0.0 > Ahg475815 jgi|Araly1|475815|fgenesh2_kg.2__945__AT1G67180.1 Length=1395 Score = 1881 bits (1018), Expect = 0.0 Identities = 1280/1400 (91%), Gaps = 43/1400 (3%) Strand=Plus/Plus Query 89 ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGATCCGATAGGTTTAAGCTCATC 148 |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||| Sbjct 1 ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGGTCTGACAGGTTCAAGCTCATC 60 Query 149 AAGCTTATTTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAGATCTATTACACAT 208 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 AAGCTTATCTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAAATCTATTACACAT 120 Query 209 TTGGTGTGTTGGAAATTTGAGGGCAAAAAGTACGATCTTGCAAAGAAGTTTGGTACAGTA 268 ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| Sbjct 121 TTGGTGTGTTGGAAATTCGAGGGTAAAAAGTATGATCTTGCGAAGAAGTTTGGTACAGTA 180 Query 269 GTAGTGAATCATCGATGGGTGGAAGAATGTGTAAAGGAAGGGAGAAGAGTTTCCGAGACG 328 ||||||||||||| |||||| ||||||||||| | ||||||||| ||||||| |||||| Sbjct 181 GTAGTGAATCATCAATGGGTTGAAGAATGTGTGAGGGAAGGGAGGCGAGTTTCTGAGACG 240 Query 329 CCTTATATGTTTGATAGTGGAGAAGAGGTTGGACCTTTGATGATTGAACTACCTGCAGTT 388 |||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct 241 CCTTATATGTTTGAGAGTGGGGAAGAGGTTGGACCGTTGATGATTGAACTTCCTGCGGTT 300 Query 389 TCTGAGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTTCTGAAACTTTTGATAAATAC 448 |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 301 TCTGGGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTGCTGAAACTTTTGAGAAATAC 360 Query 449 TTTAGTAATGGTGGAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCAC-T---TGGA- 503 |||||||| |||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 361 TTTAGTAAAGGTGAAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCACTTGGATGGAC 420 Query 504 ----------TG---GAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACA 550 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTGTCTTGTTGAAAGAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACA 480 Query 551 AAGAGGCCGAGTAGTATTCTTGAAAACAAGGAAAACAGTGGTGTGGCAGAATCTTCACGG 610 ||||||||||||| |||| ||||| |||||||||||| ||| |||||| |||| || ||| Sbjct 481 AAGAGGCCGAGTAATATTTTTGAAGACAAGGAAAACACTGGCGTGGCAAAATCCTCGCGG 540 Query 611 AAAGGAAAAAAGCGGGTAGTAAAGCAACGCTCTTACAGAAACCTTATCGACCTTGAATCT 670 || ||||| | || | |||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 541 AAGGGAAAGAGGCAGTTAGTAAAGCAACGCTCTTGCAGAAACCTTATTGACCTAGAATCT 600 Query 671 GATGAGGAATCTGATAATAACCATCATGACAACTCTGATGAGAACCAAAATGAGACTCAG 730 |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct 601 GATGAGGAATCTGATAATAACCGTCATGAAAACTCTGATGAGAACCGAAATGAGACTCAG 660 Query 731 GATCATAGAGAGCCTGCTGATGAAAATGTGAGGGGTTTTGTTTTCGAACAAGGAGAAACA 790 |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 661 GATCCTAGAGAGCCTGCTGATGAAAATGAGAGGGGTTGTGTTTTCGAACAAGGAGAAACA 720 Query 791 TCAGCTCTTCGACATCCTGGAGACT-TGGCAACACCAAACTGGGATGTAGATGAAATAGA 849 ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||| Sbjct 721 TCAGCTCTTCGACATCCTGCAGACTCT-GCAACACAAAACTGGGATGTAGATGAAATAGA 779 Query 850 GGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGCCCTAGATCATTTAGTCCAGA 909 ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| Sbjct 780 GGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGTCCAAGATCAATTAGTCCAGA 839 Query 910 GATAAAACCACAAGATGAT--G----A-T-----------GAGTCAACAAGAGAAGAGAC 951 ||||||||| ||||||||| | | | || ||||||||||| ||||| Sbjct 840 GATAAAACCGCAAGATGATGGGTCAAACTACAACAAACCCGAATCAACAAGAGACGAGAC 899 Query 952 AGAAGCAACTGAGAAGGCTCCTGCACAAGTTTCTTGTATCATATGCTGGACCGAGTTCAG 1011 |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 900 AGAAGCAACTCAGAAGGCTACTGCACAGGTTTCTTGTATCATATGCTGGACCGAGTTCAG 959 Query 1012 TTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCATGCATCCAAAAATG 1071 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 960 TTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCGTGCATCCAAAAATG 1019 Query 1072 GGCAGACCGTTTGGTTTCAGAAAGAAAGAAAACAACATGTCCACTGTGCAAGTCCAATTT 1131 |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| Sbjct 1020 GGCAGACCGTTTGGTTTCAGAAAGAAAGAAGACAACATGTCCATTGTGCAAGTCTAATTT 1079 Query 1132 CATCACAATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATACTCACAAAC 1191 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1080 CATCACCATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATATTCACAAAC 1139 Query 1192 AGTCCCTGACTTATCTTCAACAAATAACATTCTTGTAGTACTCCCTGAAGAAGAAGAACA 1251 |||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 1140 CGTCCCTGACTTATCTTCAACAAATAACACCCTTGTAGTACTCCCTGAAGAAGAA---CA 1196 Query 1252 AAGACAAACTCTCAATCCACTGACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGA 1311 |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1197 AAGACAAACTTTTAATCCACTAACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGA 1256 Query 1312 GCCAGAGGAGCTTCTGATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCCTATTG 1371 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1257 GCCAGAGGAGCTTCTCATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCGTATTG 1316 Query 1372 TTTAGACCCTTATCTGCTTCCTTGGACCTGTAACCATTGCAATGATCTTCAGATGATGTA 1431 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1317 TTTAGACCCTTATCTACTTCCTTGGACCTGCAACCATTGCAATGATCTTCAGATGATGTA 1376 Query 1432 CCACCGTCG-CAACTACTAA 1450 ||| ||||| || ||||||| Sbjct 1377 CCAGCGTCGTCA-CTACTAA 1395 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54240508880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5