BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67180.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475815 jgi|Araly1|475815|fgenesh2_kg.2__945__AT1G67180.1 1881 0.0
> Ahg475815 jgi|Araly1|475815|fgenesh2_kg.2__945__AT1G67180.1
Length=1395
Score = 1881 bits (1018), Expect = 0.0
Identities = 1280/1400 (91%), Gaps = 43/1400 (3%)
Strand=Plus/Plus
Query 89 ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGATCCGATAGGTTTAAGCTCATC 148
|||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 1 ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGGTCTGACAGGTTCAAGCTCATC 60
Query 149 AAGCTTATTTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAGATCTATTACACAT 208
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 AAGCTTATCTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAAATCTATTACACAT 120
Query 209 TTGGTGTGTTGGAAATTTGAGGGCAAAAAGTACGATCTTGCAAAGAAGTTTGGTACAGTA 268
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 121 TTGGTGTGTTGGAAATTCGAGGGTAAAAAGTATGATCTTGCGAAGAAGTTTGGTACAGTA 180
Query 269 GTAGTGAATCATCGATGGGTGGAAGAATGTGTAAAGGAAGGGAGAAGAGTTTCCGAGACG 328
||||||||||||| |||||| ||||||||||| | ||||||||| ||||||| ||||||
Sbjct 181 GTAGTGAATCATCAATGGGTTGAAGAATGTGTGAGGGAAGGGAGGCGAGTTTCTGAGACG 240
Query 329 CCTTATATGTTTGATAGTGGAGAAGAGGTTGGACCTTTGATGATTGAACTACCTGCAGTT 388
|||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||
Sbjct 241 CCTTATATGTTTGAGAGTGGGGAAGAGGTTGGACCGTTGATGATTGAACTTCCTGCGGTT 300
Query 389 TCTGAGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTTCTGAAACTTTTGATAAATAC 448
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 301 TCTGGGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTGCTGAAACTTTTGAGAAATAC 360
Query 449 TTTAGTAATGGTGGAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCAC-T---TGGA- 503
|||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 361 TTTAGTAAAGGTGAAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCACTTGGATGGAC 420
Query 504 ----------TG---GAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACA 550
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGTCTTGTTGAAAGAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACA 480
Query 551 AAGAGGCCGAGTAGTATTCTTGAAAACAAGGAAAACAGTGGTGTGGCAGAATCTTCACGG 610
||||||||||||| |||| ||||| |||||||||||| ||| |||||| |||| || |||
Sbjct 481 AAGAGGCCGAGTAATATTTTTGAAGACAAGGAAAACACTGGCGTGGCAAAATCCTCGCGG 540
Query 611 AAAGGAAAAAAGCGGGTAGTAAAGCAACGCTCTTACAGAAACCTTATCGACCTTGAATCT 670
|| ||||| | || | |||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 541 AAGGGAAAGAGGCAGTTAGTAAAGCAACGCTCTTGCAGAAACCTTATTGACCTAGAATCT 600
Query 671 GATGAGGAATCTGATAATAACCATCATGACAACTCTGATGAGAACCAAAATGAGACTCAG 730
|||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 601 GATGAGGAATCTGATAATAACCGTCATGAAAACTCTGATGAGAACCGAAATGAGACTCAG 660
Query 731 GATCATAGAGAGCCTGCTGATGAAAATGTGAGGGGTTTTGTTTTCGAACAAGGAGAAACA 790
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 661 GATCCTAGAGAGCCTGCTGATGAAAATGAGAGGGGTTGTGTTTTCGAACAAGGAGAAACA 720
Query 791 TCAGCTCTTCGACATCCTGGAGACT-TGGCAACACCAAACTGGGATGTAGATGAAATAGA 849
||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct 721 TCAGCTCTTCGACATCCTGCAGACTCT-GCAACACAAAACTGGGATGTAGATGAAATAGA 779
Query 850 GGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGCCCTAGATCATTTAGTCCAGA 909
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 780 GGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGTCCAAGATCAATTAGTCCAGA 839
Query 910 GATAAAACCACAAGATGAT--G----A-T-----------GAGTCAACAAGAGAAGAGAC 951
||||||||| ||||||||| | | | || ||||||||||| |||||
Sbjct 840 GATAAAACCGCAAGATGATGGGTCAAACTACAACAAACCCGAATCAACAAGAGACGAGAC 899
Query 952 AGAAGCAACTGAGAAGGCTCCTGCACAAGTTTCTTGTATCATATGCTGGACCGAGTTCAG 1011
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 AGAAGCAACTCAGAAGGCTACTGCACAGGTTTCTTGTATCATATGCTGGACCGAGTTCAG 959
Query 1012 TTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCATGCATCCAAAAATG 1071
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCGTGCATCCAAAAATG 1019
Query 1072 GGCAGACCGTTTGGTTTCAGAAAGAAAGAAAACAACATGTCCACTGTGCAAGTCCAATTT 1131
|||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 1020 GGCAGACCGTTTGGTTTCAGAAAGAAAGAAGACAACATGTCCATTGTGCAAGTCTAATTT 1079
Query 1132 CATCACAATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATACTCACAAAC 1191
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 CATCACCATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATATTCACAAAC 1139
Query 1192 AGTCCCTGACTTATCTTCAACAAATAACATTCTTGTAGTACTCCCTGAAGAAGAAGAACA 1251
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1140 CGTCCCTGACTTATCTTCAACAAATAACACCCTTGTAGTACTCCCTGAAGAAGAA---CA 1196
Query 1252 AAGACAAACTCTCAATCCACTGACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGA 1311
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGACAAACTTTTAATCCACTAACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGA 1256
Query 1312 GCCAGAGGAGCTTCTGATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCCTATTG 1371
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 GCCAGAGGAGCTTCTCATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCGTATTG 1316
Query 1372 TTTAGACCCTTATCTGCTTCCTTGGACCTGTAACCATTGCAATGATCTTCAGATGATGTA 1431
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 TTTAGACCCTTATCTACTTCCTTGGACCTGCAACCATTGCAATGATCTTCAGATGATGTA 1376
Query 1432 CCACCGTCG-CAACTACTAA 1450
||| ||||| || |||||||
Sbjct 1377 CCAGCGTCGTCA-CTACTAA 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5