BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67190.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475816 jgi|Araly1|475816|fgenesh2_kg.2__946__AT1G67190.1 2189 0.0
> Ahg475816 jgi|Araly1|475816|fgenesh2_kg.2__946__AT1G67190.1
Length=1508
Score = 2189 bits (1185), Expect = 0.0
Identities = 1389/1486 (93%), Gaps = 19/1486 (1%)
Strand=Plus/Plus
Query 1 GTCGTCGTCTCTCTCATTTTCTTCTCCT-CTAAAATAACCAGATCGCCTCCTCCAATCAT 59
||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 1 GTCGTCGTCTCTCTCATTTTCTTCTTCTCCTCTAATAACCAGATCGCCTCCTCCAA--AT 58
Query 60 CTTCTTCTTCCTCCTCGCAGATCCACCGTCGTCA-ACTATTTTATTCATCCCGGAGAA-C 117
|||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||| |
Sbjct 59 CTTCTTCTTCCTCCTCCCAGATCCACCGTCTTCATAC-CTTTTCTTCATCCCGGAGAACC 117
Query 118 TAAAATCGGT-T-----TCGAATTATGGACTATCTTCCTGTGGAAGTTATTGGAAACATA 171
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 T-AAATCGGTATACAGATCGAATTATGGACTATCTTCCTGTGGAAGTTATTGGAAACATA 176
Query 172 CTCTCACGTCTCGGAGGAGCTCGTGATGTTGTGATAGCTTCAGCAACATGTAGAAAATGG 231
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 177 CTCTCACGTCTCGGAGGAGCTCGGGATGTTGTGATAGCTTCTGCAACATGTAGGAAATGG 236
Query 232 CGAGAAGCTTGTAGGAAACATCTTCAAACACTTTCTTTCAATTCCGCTGATTGGCCGTTT 291
|||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 237 CGAGAAGCTTGTCGAAAACATCTACAGACACTTTCTTTCAATTCCGCTGATTGGCCGTTT 296
Query 292 TATCGAGACCTTACAACGAATCGTTTAGAGATTCTTATAACTCAAACCATTTTCCAAACC 351
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 297 TATCGAGATCTCACAACGAATCGTTTAGAGATCCTTATAACTCAAACCATTTTCCAAATC 356
Query 352 ATGGGGCTGCAAGGTCTTTCTATTATGATGGATGATGCGAATAAGTTTTCGGCTGCCACA 411
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACGGGACTGCAAGGTCTTTCTATTATGATGGATGATGCGAATAAGTTTTCGGCTGCCACG 416
Query 412 GTTATCGCTTGGCTTATGTATACGAGAGACACTTTGCGGAGATTGTCTTATAATG-TCAG 470
||||| |||||||||||||||||||| || |||||||| | ||||||||||||| || |
Sbjct 417 GTTATTGCTTGGCTTATGTATACGAGGGATACTTTGCGCCGGTTGTCTTATAATGTTC-G 475
Query 471 GACGACTCCTAATGTTAACATTCTTGAAATCTGTGGGAGGCAGAAGCTTGAAGCTTTGGT 530
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TACTACTCCTAATGTTAACATTCTTGAAATCTGTGGGAGGCAGAAGCTTGAAGCTTTGGT 535
Query 531 TTTGGCTCATAATTCTATTACTGGTGTTGAACCAAGTTTTCAGAGGTTTCCTTGTTTGAA 590
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 536 TTTGGCTCATAATTCTATTACTGGAGTTGAACCAAGTTTTCAGAGATTTCCTTGTTTGAA 595
Query 591 GTCTCTGTCACTGAGTTATGTTAGTATTTCAGCTTTGGATTTGAATCTTTTGCTTAGTGC 650
|| || || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 596 ATCGCTTTCGTTGAGTTATGTTAGCATTTCAGCTTTGGATTTGAATCTTTTGCTTAGTGC 655
Query 651 TTGTCCGATGATCGAGAGTTTGGAACTTGTGAGTCTCGAGATTGCAATGTCGGATGCGCA 710
|| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 656 ATGCCCGATGATCGAGAGTTTGGAACTTGTGAGTTTGGAGATTGCAATGTCGGATGCGCA 715
Query 711 AGTGACAATTGAGTTGAGTAGCCCGACGCTGAAGAGTGTTTATTTCGATGGGATTAGTTT 770
|||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGTGACGATTGAACTGAGCAGCCCGACGCTGAAGAGTGTTTATTTCGATGGGATTAGTTT 775
Query 771 GGATAAGTTTATCTTGGAGGCTGATAGTATTGAGTTCTTGCATATGAAAGACTGTGTTCT 830
||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 776 GGATAAGTTCATATTGGAGGCTGATAGTATCGAGTTCTTGCACATGAAAGACTGTGTTCT 835
Query 831 CGAGCTTTTTGAGCTAATAGGAAACGGGACTTTGAAGCATTTTAAGCTTGATGATGTTAG 890
|||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 836 CGAGCTCTTTGAGCTTATAGGAAACGGAACTTTGAAGCATTTTAAGCTCGACGATGTCAG 895
Query 891 TGTTATACATCTTGATATCATGGAGACATCTGAAAGCCTTGAAGTAGTTGATGTCAATCA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGTTATACATCTTGATATCATGGAGACATCTGAAAGCCTTGAAGTAGTTGATGTCAATCA 955
Query 951 CTTCACAATGGTTTGGCCAAAGTTCTATCAGATGATCTCAAGGTCACAGAAACTAAAGAA 1010
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 956 CTTCACAATGGTTTGGCCAAAGTTCTACCAGATGATCTCAAGATCTCAGAAACTAAAGAA 1015
Query 1011 ACTTCGTCTTTGGGATGTGGTTTTTGATGATGACGATGAAATCATCGATGTTGAGTCCAT 1070
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACTCCGTCTGTGGGATGTGGTCTTTGATGATGACGATGAAATCATCGATGTTGAGTCCAT 1075
Query 1071 TGCCGCTGGTTTCTCTCACCTGACTCATCTTTCGTTAAGCTATGACCTTAAAGATGGAGC 1130
||| |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 1076 TGCTGCTGGTTTCTCTCACCTGACCCATCTTTCATTAAGCTACGATCTTAAAGATGGAGC 1135
Query 1131 TGCTCATTACAGTTTGCAAGGGACTACTCAGTTGGAGAACGTGACTGTATTGGAGCTCGG 1190
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1136 TGCTCATTACAGTTTGCAAGGGACCACTCAGTTGGAGAACGTGACTGTATTGGAGCTCGG 1195
Query 1191 ATGGACTGTGATCAACGATGTTTTCTCAATCTGGGTCGAGGAGTTGCTGAGAAGATGTCC 1250
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATGGACCGTGATCAACGATGTTTTCTCAATCTGGGTCGAGGAGTTGCTGAGAAGATGTCC 1255
Query 1251 GAATCTGAAGAAGCTGATCATTTATGGGGTTGTCTCAGAAACCAAAACACAAGGAGATTG 1310
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GAATCTGAAGAAGTTGATCATTTATGGGGTTGTCTCAGAAACCAAAACACAAGGAGATTG 1315
Query 1311 TCAAATTCTGGCGACATTCACATGGTCCATTGTTCAACTCATGAGGAAATATATACATGT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1316 TCAAATTCTGGCGACATTCACATGGTCCATTGTTCAACTCATGAGGAAATACATTCATGT 1375
Query 1371 TGAGGTACAATTTGAGTATGAGTAAACGATTCTTCTTCTCCATGTTGTTGAAAACAAGTT 1430
|||||||||||| || || ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1376 TGAGGTACAATTCGAATACGAGTAAACGATTCGTCTTCTCGATGTTGTTGAAAACAAGTT 1435
Query 1431 TGAAGATTGTGTAAAGATATGAATTTTG--T--GTTATTCAAAATT 1472
| |||||||||||||||| ||||||||| | |||||||||||||
Sbjct 1436 TAAAGATTGTGTAAAGATTTGAATTTTGGATTAGTTATTCAAAATT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5