BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67195.1

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475817 jgi|Araly1|475817|fgenesh2_kg.2__947__AT1G67195.1          503    6e-142


> Ahg475817 jgi|Araly1|475817|fgenesh2_kg.2__947__AT1G67195.1
Length=437

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 320/341 (94%), Gaps = 12/341 (4%)
 Strand=Plus/Plus

Query  1    CTCCATTTTCATCTTCTCTCATATCTACAAACCACACTTTTAAGTTCTTCTACATATATT  60
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  1    CTCCATTTTCATCTTCTCTCATATCTACAAGCCACACTTTTGAGTTCTTCTACATATATT  60

Query  61   AGATGGTGGTGAGGATGAGACTAGGAAAGATTGTGGAAGGCTTGAAGTCGAAGATAAAGA  120
            |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  61   AGATGGTGGTGAGGATGAGATTAGGGAAGATTGTGGAAGGCTTGAAGTCGAAGATAAAGA  120

Query  121  CTGGTCTAAGGATGCGGAAGAGatcatcattatcatcatcatcatattcatcttcatcat  180
             ||||||||||||||||||||||||||||||||||||||||||||   | | | |||| |
Sbjct  121  TTGGTCTAAGGATGCGGAAGAGATCATCATTATCATCATCATCAT---C-T-T-CATC-T  173

Query  181  catcgtcatcatcatcatcatcatcGTATGAGAAGATAGAGAAGAGTGAGAGTATGAGAT  240
              ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  174  --TC---ATCATCATCATCATCGTCGTATGAGAAGATAGAGAAGAGTGAGAGTATGAGAT  228

Query  241  TTGAGTTGAGAAGCAAAAAGGCTCACAAAATTATCCAAGAAACCCTTCAAATTGCTGACT  300
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  229  TTGAGTTGAGAAGCAGAAAGGCACACAAAATTATCCAAGAAACCCTTCAAATTGCTGACT  288

Query  301  CTCCCACTTCAAGAACTTATGCTTTCTGATTTCATCTTTTT  341
            ||||||||||||||||||||||||| |||||||||||||||
Sbjct  289  CTCCCACTTCAAGAACTTATGCTTTTTGATTTCATCTTTTT  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21824996908


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5