BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67210.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475818 jgi|Araly1|475818|fgenesh2_kg.2__948__AT1G67210.1 2104 0.0
Ahg494108 jgi|Araly1|494108|fgenesh2_kg.7__3541__AT5G38600.1 656 0.0
> Ahg475818 jgi|Araly1|475818|fgenesh2_kg.2__948__AT1G67210.1
Length=1484
Score = 2104 bits (1139), Expect = 0.0
Identities = 1342/1436 (93%), Gaps = 29/1436 (2%)
Strand=Plus/Plus
Query 97 TTTTTGTTTCCCGTTGATAAAGGGTTTATCTTTGGTGGATGATTAGTGAAACTTTTTAAG 156
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 58 TTTTTGTTTCCCGTTGATAAAGGGTTTATCATTGGTGGATGATTAGTGAAACTTTTTAAG 117
Query 157 GAGATAATAGTTCACAT-GTTTTAGTTAAAAATGGCAGCTTCAAGCGGCTCTGGTTTGGA 215
|||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAGATAATAGTTTAC-TAGATTTAGTTAAAAATGGCAGCTTCAAGCGGCTCTGGTTTGGA 176
Query 216 AGCTGAGGAGGGGGAAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATGA 275
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGCTGAAGAAGGGGAAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATGA 236
Query 276 TTTCAGAAATGTGTCTGGCCAGTTTTCAGGACAAGCATCGATCGTGGAGGTTGGGGATGC 335
|||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 237 TTTCAGAAATGTGTCTGGCCAGTTTTCAGGGGAAGCATCGATAGTGGAGGTTCGGGATGC 296
Query 336 TGTTGATGTGAGAGTCGAAACCGTGAAAGTAGATGTTAGTTCTAAATCTGGTGTTAAAAG 395
||| |||| || || |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 297 TGTCAATGTCAGTGTTGAAACCGTTAAAGTGGATGTTAGCTCTAAATCTGGTGTTAAAAG 356
Query 396 AGCCAGAACAATCTCTCTGGAACAGCAACCTTCAGTCCATGTTACTTATAAACACTTAAC 455
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 ACCCAGAACAATCTCTCTGGAACAGCAACCTTCTGTCCATGTTACTTATAAACACTTAAC 416
Query 456 AAGAGATAGTAAGCAGAAGCTGGAAAGTTTATTACAGCAATGGTCAGAATGGGAGGCAGA 515
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 AAGAAATAGTAAGCAGAAGCTGGAAAGTTTATTACAGCAATGGTCAGAATGGGAAGCAGA 476
Query 516 ACAAAATTCCTTGTCCGAGGATCAAGAACAAGTACTAGAAGCTGGTGATGAGACATACTT 575
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 477 ACAAAATTCCTTCTCTGAGGATCAAGAACAAGTACTAGAATCTGGTGATGAGACATATTT 536
Query 576 TCCTGCTTTGCGTGTGGGATTGCAGAAGACATCATCTGTATCATTTTGGTTTGACTACCA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCCTGCTTTGCGTGTGGGATTGCAGAAGACATCATCTGTATCATTTTGGTTTGACTACCA 596
Query 636 AACTGGTCACAGTTCTTCGAAGAAGTCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTA 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACTGGTCACAGTTCTTCGAAGAAGTCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTA 656
Query 696 TAACCGTGGATTTACAATTGGTTTAGATTCAGGT--T----CAAATAACGTGGAAGGAGG 749
||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 657 TAATCGTGGATTTACAATTGGTTTAGATTCAGGTGGTGGTTCAAATAACTTGGAAGGAGG 716
Query 750 CTTGGAGATTATTGATGATCCTCCACGTTGCTTCAACTGTGGCGCATACAGTCATTCTAT 809
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 717 CTTGGAGATTATTGATGATCCTCCACGTTGCTTCAATTGTGGTGCATACAGTCATTCCAT 776
Query 810 TAGAGAATGTCCAAGGCCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGCAACATAA 869
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 TAGAGAATGTCCAAAGCCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGGAACATAA 836
Query 870 AAGAAAAAGAAATCAGACTCCTGGATCCCGTCTACCATCCAGATATTATCAGAGCCTTCA 929
||| |||||||| |||||| |||||||||||||||| ||| ||||||||||||||| |||
Sbjct 837 AAGCAAAAGAAACCAGACTTCTGGATCCCGTCTACCGTCCCGATATTATCAGAGCCCTCA 896
Query 930 ACGTGGAAAATATGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAGCTTCT 989
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 AGGTGGAAAATATGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAACTTCT 956
Query 990 CGGTCTAAAGGAACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCC 1049
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGTCTAAAGGAACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCC 1016
Query 1050 ACCAGGATATTTTGCTGTAGAAGA-AGACGATGATGATCACTCGAGAATAACTATATTTG 1108
|||||||||||| | ||||||||| | |||||||| || ||| |||| ||||||||||
Sbjct 1017 ACCAGGATATTTGGGTGTAGAAGACA-ACGATGATC-TC--TCGGGAATCACTATATTTG 1072
Query 1109 GTGAGGAAGAGACTAAAGAAGAGGAAGAAGTTAAGACTGAAGAAGGTGAAATCTTGGAA- 1167
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1073 GTGAGGAAGAGACTAAAGAAGAGGAAGAAGTTAAGACTGAGGAAGGTGAAATCTTGGAAG 1132
Query 1168 AAA--GCTAGCCCTCAAGAGCCAAGAAAGATAATGACAGTTGGATTTCCCGGTATTAACG 1225
||| || ||||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 1133 AAAAAGCAAGCCCTCAAGAGCCAAGAAGGATAATGACAGTTGGGTTTCCCGGGATTAACG 1192
Query 1226 CACCCATTCCAGAAAACGCAGATTCGTGGCTATGGGAACAGAGGAATAGTAACACAGGAC 1285
||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1193 CACCCATACCAGAAAACGCAGATTCATGGCTATGGGAACAGAGGAATA--A-CACAGGGC 1249
Query 1286 ATACTAATTATCATAATCACCTTCGACCACAA--T-ATG-A---GA--TGGGCCCTCTAG 1336
||||| |||||||| ||||||||||||||||| | ||| | || ||||||||||||
Sbjct 1250 ATACTTATTATCATGATCACCTTCGACCACAAAATCATGGATATGAGATGGGCCCTCTAG 1309
Query 1337 GTATTCAACTGTCTTCAAGCTTTCCTCCAATGCATGGCATTAGATATGATCATAGGTTCG 1396
|||||||||||||||| ||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1310 GTATTCAACTGTCTTCGAGCTTTCCTCCAAGGTATGGCATTAGATATGATCATGGGTTCG 1369
Query 1397 GTTTATGACCAATAAGCCCGGGATCCGAAAGAGTTAAGATCCATTTTAGTTTTAGCAGCA 1456
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1370 GTTTATGACCAATAAGCCCGGGATCCGAAAGAGTTAAGATCCATTC-AGTTTTAGCAGCA 1428
Query 1457 GAAGATAGATTCATTAGTGAATGTGGGATGTATGATAACCATTAGTTAAAGAGTTA 1512
|||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1429 GAAGGTGGATTCATTAGTGAGTGTGGGATGTATAATAACCATTAGTTAAAGAGTTA 1484
Score = 100 bits (54), Expect = 3e-20
Identities = 59/61 (97%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 15 TTCTTGGGCGGACCAATAAAAGCCTCTCTTTTGAATCCCCCACACAGATCTATCGCCTCT 74
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TTCTTGGGCGGACCAATAAAAGCCTCTCTTTTGAATCCCCCACA--GATCTATCGCCTCT 58
Query 75 T 75
|
Sbjct 59 T 59
> Ahg494108 jgi|Araly1|494108|fgenesh2_kg.7__3541__AT5G38600.1
Length=1859
Score = 656 bits (355), Expect = 0.0
Identities = 747/928 (80%), Gaps = 59/928 (6%)
Strand=Plus/Plus
Query 367 GATGTTAGTTCTAAATCTGGTGTTAAAAGAGCCAGAACAATCTCTCTG--GAACAGCAAC 424
||||||||||||||| | ||||| |||||| || |||| ||| | || |||||||||
Sbjct 391 GATGTTAGTTCTAAAGCGGGTGTGAAAAGACCCCGAAC-ATC-GTTTGACGAACAGCAAT 448
Query 425 CTTCAGTCCATGTTACTTATAAACACTTAACAAGAGATAGTAAGCAGAAGCTGGAAAGTT 484
|| |||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||
Sbjct 449 CTACAGTACATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCTGGAAAGTT 508
Query 485 TATTACAGCAATGGTCAGAATGGGAGGCAGAACAAAAT-TCCTTG-TCCGAGGATCAAGA 542
|||||| ||||||||||||||||||||| ||| || | |||||| | | |||||||||
Sbjct 509 TATTACGGCAATGGTCAGAATGGGAGGCTGAA-AACACGTCCTTGGTTC-AGGATCAAGT 566
Query 543 ACAAGTACTAGAAGCTGGTGATGAGACATACTTTCC-TGCTTTGCGTGTGGGATTGCAGA 601
|||| | ||||| ||||||| |||||||| ||||| ||| || ||||| ||||||||||
Sbjct 567 ACAACCATTAGAATCTGGTGAAGAGACATA-TTTCCCTGCCTTACGTGTTGGATTGCAGA 625
Query 602 AGACATCATCTGTATCATTTTGGTTTGACTACCAAACTGGTCAC-A-GTT-CTTCGAAGA 658
|||| || ||||| ||||| ||| | ||| |||||||||||| | | | || |||||
Sbjct 626 AGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTC-CTAAGCCGCTG-GAAGA 683
Query 659 AGTCTGTTCC-AGTGGAAAGTAGCACTACTCCTCTTTATAACCGTGGATTTACAATTGGT 717
|| ||| || ||||||||||||||| |||||||| ||| ||||| |||| ||||||||
Sbjct 684 -GTTTGT-CCTAGTGGAAAGTAGCACCACTCCTCTCTATGACCGTAAATTTGCAATTGGT 741
Query 718 TTAGATTCAG--G-T---TCAA-ATAACGTGGAAGGAGGCTTGGAGATTATTGATGAT-- 768
||| |||||| | | |||| | ||| ||||||| || |||||| |||||||||||
Sbjct 742 TTAAATTCAGCAGATGGCTCAAGA-AACTTGGAAGGGGGATTGGAGGTTATTGATGATGA 800
Query 769 -CCTCCACGTTGCTTCAACTGTGGCG-CATACAGTCATTCTATTA-GAGAATGTCCAAGG 825
||||||||||||||||| ||||| | | || |||||||| ||| |||||||||||| |
Sbjct 801 TCCTCCACGTTGCTTCAATTGTGGTGGC-TATAGTCATTCC-TTAAGAGAATGTCCAAAG 858
Query 826 CCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGCAACATAAAAGAAAAAGAAATCAG 885
||||||||||||||||| |||| || |||||||| || || ||| ||| ||||||||
Sbjct 859 CCTTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAATCTAAACGAAATCAG 918
Query 886 ACTCCT-G-GATCCC-GTCTACCATCCAGATATTATCAGAG-CCTTCAACGTGGAAAATA 941
| | | | | ||| |||||||||| ||||||||||| | ||| ||| ||||||| ||
Sbjct 919 AGTAGTAGTGGGCCCCGTCTACCATCGAGATATTATCAAAAACCT-CAAAGTGGAAAGTA 977
Query 942 TGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAGCTTCTCGG-TCTAAAGG 1000
|||||||||||| || ||| |||||||||||||||| ||| ||||||| | ||| ||
Sbjct 978 TGATGGCTTGAAACCCGGCACACTTGATGCAGAGACACGTCAGCTTCT-GAATCTTGGGG 1036
Query 1001 AACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCCACCAGGATATT 1060
|||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 1037 AACTAGATCCTCCTCCATGGCTCAACAGAATGCGAGAGATTGGGTATCCTCCAGGATACT 1096
Query 1061 TTGCTGTAGAAGAAGACGATGATGATCACTCGAGAATAACTATATTTGGTGAGGAAGAGA 1120
| ||| |||||| ||| || || || | | | |||||||||||||| || |||||
Sbjct 1097 TAGCTCCAGAAGATGACCATT-TG-TC--T-G-GTATAACTATATTTGG--AG-AAGAGG 1147
Query 1121 CTAAAGAAGAGGAAG-AAGTTA-AGACTGAAGAAGGTGAAATCTTGGAAAAAGCTAGCCC 1178
| ||| || || || ||| ||| ||| || || ||||||||||||||||| | ||
Sbjct 1148 -TGGAGACTCGGGAGGAA-TTAGAGAGTGAGGATGGGGAAATCTTGGAAAAAGCAAACCA 1205
Query 1179 TCAAGAGCCAAGAAA-GATAATGACAGTTG-GATTTCCCGGTATTAACGCACCCATTCC- 1235
|| ||||||| ||| || || |||||| | | ||||| || ||||| || ||| ||||
Sbjct 1206 TCCAGAGCCAC-AAATGAAAAAGACAGTCGAG-TTTCCGGGAATTAATGCTCCC-TTCCC 1262
Query 1236 AGAAAACGCAGATTCGTGGCTATGGGAA 1263
||||||||||||| |||||| ||||||
Sbjct 1263 AGAAAACGCAGATGAGTGGCTTTGGGAA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5