BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67220.1
Length=4212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925964 jgi|Araly1|925964|scaffold_201525.1 3321 0.0
> Ahg925964 jgi|Araly1|925964|scaffold_201525.1
Length=3110
Score = 3321 bits (1798), Expect = 0.0
Identities = 2223/2428 (92%), Gaps = 29/2428 (1%)
Strand=Plus/Plus
Query 1713 AATTGGTGTGGATATTGTTGAGCCGATGAAATGTAATGAAGAGAGCAAGTGTGAGGTTAA 1772
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 690 AATTGGTGTGGATATTGTTGAGCCGATGAAATGTAACGAAGTGACCAAGTGTGAGGTTAA 749
Query 1773 TGCTGACACAATGTCTCTGCAAAAACGTAGCAAGAGAGCTGTCTCTTTGGTCGAACGTTT 1832
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 750 TGCTGACACAATGTCTCTGCAAAAACGTAACAAGAGAGGTGTCTCTTTGGTCGAACGTTT 809
Query 1833 CACAGAAGAAGAGATAAAGCTGCATATAATGAGTCTAAAGAAGCCAAGTACACAGAGCGC 1892
||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 810 CACAGAAGAAGAGATTAAGCTGCATATAATGAGTCTTACGAAGCCAAGTATTCAGAGCGC 869
Query 1893 AGTCGA-AGGAATGTGTGACCTC-------A--AGGAGGAGGAGGAATCATGTCAATTGT 1942
| | | || ||||||||||| | | |||||||||||||| ||||||||||||
Sbjct 870 A-ACCAGAGAAATGTGTGACCACAAGGAGGAGGAGGAGGAGGAGGAAGCATGTCAATTGT 928
Query 1943 GTGACGATGGCACACTCTTGTTTCCACCACAACCACTATACTGCTTATTATGCAGCCGCC 2002
||| |||||| |||||||| |||||||| || ||||||||| |||||||| |||||
Sbjct 929 GTGTTAATGGCAGACTCTTGTATCCACCACCCCCTTTATACTGCTCATTATGCAACCGCC 988
Query 2003 GCATCGATGACAG-ATCTTTCTATTATACCCCTGGGGAAGAAGAACTAAGCAATGCGCAA 2061
|||| |||||| | |||||||||||| ||||| |||||||||||||||| | |||| ||
Sbjct 989 GCATTGATGAC-GAATCTTTCTATTACACCCCCGGGGAAGAAGAACTAACCGATGCAAAA 1047
Query 2062 CATCAAATCTGCAGTCCTTGTCACAGTAGATGTAAAACCAAGTTCCCTTTATGTGGAGTC 2121
||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||| ||
Sbjct 1048 CATCAGATCTGCAGTCCTTGTCACACTAAATGTAAAACCAAGTTCACTTTATGTGGAATC 1107
Query 2122 TTTATCGATAAACACAAAATGCTTAAAAGGAGTAACTTTGACAACGCAGATACGGAGGAG 2181
|||||||| ||| |||||||||||| ||||| |||| ||||||||||| |||| ||||||
Sbjct 1108 TTTATCGACAAAAACAAAATGCTTAGAAGGAATAACGTTGACAACGCAAATACAGAGGAG 1167
Query 2182 TGGGTTCAATGTGAATCTTGTGAAAAATGGCAACATCAGATATGTGGTCTCTACAATAAG 2241
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TGGGTTCAATGTGAATCTTGCCAAAAATGGCAACATCAGATATGTGGTCTCTACAATAAG 1227
Query 2242 CTTAAAGA-CGAAGACAAAACCGCAGAGTATATTTGTCCT-ACATGTTTATTAGAGGAG- 2298
| |||||| | ||||||| |||||||| ||| |||||||| | ||||||||||||||||
Sbjct 1228 CATAAAGATC-AAGACAACACCGCAGACTATTTTTGTCCTGA-ATGTTTATTAGAGGAGC 1285
Query 2299 TGTCAAAGTATCAACAACATGGC-ACTCGTTGACTATACGGATTCTGGAGCAAAAGATTT 2357
| | |||| | |||||||| || ||||| |||| |||| ||||| ||||||||||||||
Sbjct 1286 T-TAAAAGCAGCAACAACA-AGCGACTCGATGACAATACCGATTCGGGAGCAAAAGATTT 1343
Query 2358 GCCTGAAACTGTCCTCAGCTACTTTCTAGAGCAAAGGCTATTCAAGCGCCTCAAGGAAGA 2417
||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 1344 GCCTGAAACCATCCTCAGCTACTTCCTAGAGCAAAGGCTATTCAGGCGCCTAAAGGAAGA 1403
Query 2418 AAGATACCAAACAGCAAAGGCTACTGGGAAGAGCATCAATGATGTACCTGAACCAGAGGG 2477
|||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||| ||
Sbjct 1404 AAGATACCAAACCGCAAAGGCTAGTGGGAAGAGCATCGATGATGTATCTGAACCAGAAGG 1463
Query 2478 TCTTACTCTCAGAGTCGTGTTTTCGGCTGACAGAACCTTAACTGTCAACAAACAATTTGC 2537
|||||| ||||||||||||||||||||||| | |||| |||| |||||||||||||||||
Sbjct 1464 TCTTACCCTCAGAGTCGTGTTTTCGGCTGATAAAACCCTAACCGTCAACAAACAATTTGC 1523
Query 2538 CAGTTTACTTCACAAAGAAAACTTTCCTAGTGAATTCCCTTACAGATCAAAGGTTATTCT 2597
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CAATTTGCTTCACAGAGAAAACTTTCCTAGTGAATTCCCTTACAGATCAAAGGTTATTCT 1583
Query 2598 TCTATTTCAGAAAGTCCATGGAGTTGATATATGCATCTTTGCATTGTTTGTCCAAGAGTT 2657
|||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1584 TCTATTCCAGAAAGTCGACGGAGTTGATATATGCATCTTTGCCTTGTTTGTCCAAGAGTT 1643
Query 2658 TGGATCAGAATGTAGCCAACCAAACCAACGCAGCACATACATATTTTATCTCGATTCTGT 2717
||||||||||||| |||||||||| ||||||||||||||||| | ||||| ||||| ||
Sbjct 1644 TGGATCAGAATGTGGCCAACCAAATCAACGCAGCACATACATCGTATATCTAGATTCCGT 1703
Query 2718 CAAATACTTTAAACCTGAGAGAGTAACATTCGCAGGAGAAGCTCTTCGAACTTTCGTTTA 2777
||| ||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 1704 CAAGTACTTTAGACCTGAGAGAGTAACATTCGGAGGAGAAGCTCTACGAACATTCGTTTA 1763
Query 2778 TCATGAAGTATTGATTGGATATCTTGAATATTGTAAGCTTCGAGGTTTCACGACGAGTTA 2837
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1764 TCATGAAATATTGATTGGATATCTTGAGTATTGTAAGCTTCGGGGTTTCACGACGAGTTA 1823
Query 2838 TATATGGGCGTGTCCACCTAAA-ATAGGACAAGACTACATAATGTATTCTCATCCTAAGA 2896
|||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1824 TATATGGGCGTGTCCACC-AAAGAAAGGACAAGACTACATTATGTATTCTCATCCTAAGA 1882
Query 2897 CTCAGCAAACACCTGACACTAAGAAGCTTCGCAAATGGTATGTGTCAATGCTCCAAAAAG 2956
|||||||||| || | ||||||||||||||| |||||||| ||||| |||| ||||||
Sbjct 1883 CTCAGCAAACCCCCCAAACTAAGAAGCTTCGCCAATGGTATATGTCATTGCTTAAAAAAG 1942
Query 2957 CAGCCGAGCAGAGGGTAGTGATGAATGTTACAAACTTGTATGATCGGTTCTTCGATTCGA 3016
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1943 CAGCAGAGCGGAGAATAGTGATGAATGTTACAAACTTGTATGATCGGTTCTTCGTTTCAA 2002
Query 3017 CAGAGGAATATATGACAGCTGCGCGGTTGCCTTACTTTGAAGGATCTTTCTGGTCCAATA 3076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2003 CAGAGGAATATATGACAGCTGCGCGGTTGCCTTACTTTGAAGGATCTTTCTGGTGCACTA 2062
Query 3077 GGGCTGAGATTATGATTCAAGACATTGA-AAGAGAAGGCAATAATGAGTTGCAGAAGAAG 3135
||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 2063 GGGCTGAGATTATGACTCAAGAGATTGAGAA-AGAAGGCAATAATGAGTTGCAGAAGAAG 2121
Query 3136 GTTAAATTGCTTTCTAGAAGAAAA-GTAAAGACTATGAGCTACAAAACTACGGGTGATGT 3194
|||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||
Sbjct 2122 GTTAAATTGCTTTCTAGAAGAAAACG-AAAGACTATGAGCTACAAAACTACGGCTGGTGT 2180
Query 3195 TGATGTTGATGATGTTAAAAACATTCTCCTGATGGAAAAGCTGGAAAAAGAGGTATTCCC 3254
||||||||||||||| |||||||||||| | ||||||||||| | ||||||||||||||
Sbjct 2181 TGATGTTGATGATGTAAAAAACATTCTCGTAATGGAAAAGCTCGCGAAAGAGGTATTCCC 2240
Query 3255 AAATAAGAAGGATTTAATGGTGGTGGAATTGAATTATTCATGCACACGCTGTTCGAAAGC 3314
|| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2241 AAGTAAGGAGGATTTCATGGTGGTGGATTTGAATTATTCATGCACACGCTGTTCGAAAGC 2300
Query 3315 CGTATTATCAGGATTGAGATGGTTTTGCGAGAAGTGCAAGAATCTTCATTTGTGTGAAAG 3374
| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2301 CATATTATCGGGATTGAGATGGTTTTGCGAGAAGTGCAAGAATCTTCAACTGTGTGAAAG 2360
Query 3375 CTGCTATGATGCAGGACAAGAGCTTCCTGGAGAACACATATATAAGAGGATGGACAAAGA 3434
|||||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 2361 CTGCTATGATGCAGAACAAGAGCTTCCTGGGGAACACATATACAAGAGGAAGGACAAAGA 2420
Query 3435 GAAGCATCAGCTCTCAAAGGTTCAGGTGAACGGCGTACTGTTTTCTACAACAGAGGATAA 3494
||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2421 GAAGCATCAGCTCTCTAAGGTTCAGGTGAACGGCGTAGTGTCTTCTACAACAGAGGATAA 2480
Query 3495 TGATATCATCCAAGAAAACGATATGTTCGAAAGCAGACAAGCGTTCTTAGCTTTTTCTCA 3554
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2481 TGATATCATTCAAGAAAACGATATGTTCGAAAGCAGACAAGCGTTCTTAGCTTTTTCTCA 2540
Query 3555 AAAGCATAATTACAACTTCCACACGCTTCGACATGCCAAGCATTCTTCGATGATGATACT 3614
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2541 AAAGCATAACTACAACTTTCACACGCTTCGACATGCCAAGCATTCTTCGATGATGATACT 2600
Query 3615 TCACCATCTTCACACCTCAAACAAGCATCATTGCTCTCAAAACTCTAGCAGTCTCACCTG 3674
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 2601 TCACCATCTTCACACCTCAAACAAGCAACATCACTCTCAAAACTCTAGCAGTCTCACGTG 2660
Query 3675 CACGGCCTGCAAAAAAGATGTTTCGACAACGATTTACTTCCCTTGTTTGCTCTGTCCGGA 3734
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2661 CACGGCCTGCAAAAAAGATGTGTCGACCACGATTTACTTCCCTTGTTTGCTCTGTCCGGA 2720
Query 3735 TTACCGAGCTTGCACTGGATGCTATACCAAAAACAGAACCCTTCGTCATCTTCATATTTT 3794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2721 TTACCGAGCTTGCACTGGATGCTATACCAAAAACACAACCCTTCGTCATCTTCATATTTT 2780
Query 3795 CCCTACACTCCCTTCAGCTAATAGAGCGCCGTCGAGAACCGTAATGGTTCTTGAGATATT 3854
||| |||||||||||||||||| |||||||| | ||||| ||| ||||||||||||||||
Sbjct 2781 CCCCACACTCCCTTCAGCTAATGGAGCGCCGCCTAGAACAGTAGTGGTTCTTGAGATATT 2840
Query 3855 GAACGCAATATCGCATGCGCTTCTGTGTCA-GCACAAGACCACTAAGTCATGCTCATACC 3913
||||||||||||||||||| ||| ||| || || || ||||||||| |||||||||||||
Sbjct 2841 GAACGCAATATCGCATGCGTTTCGGTGCCAAGC-CACGACCACTAACTCATGCTCATACC 2899
Query 3914 CGAAATGCCACGAAGTTAAAGCATTGTTCACTCACAATGTACAATGCAAAATCAGAAAGA 3973
|||||||||| |||||||||| |||||||| |||||||| |||||||||||| ||| |||
Sbjct 2900 CGAAATGCCATGAAGTTAAAGTATTGTTCAGTCACAATGCACAATGCAAAATGAGAGAGA 2959
Query 3974 AGGGAACTCGTTGTAATACTTGCTACAAATTGTGGCAGACAATAAGGATTCATGTGTACC 4033
||||| |||||||||| | |||| ||| |||||||||||||||||||||||| | |||||
Sbjct 2960 AGGGAGCTCGTTGTAACATTTGCAACAGATTGTGGCAGACAATAAGGATTCACGCGTACC 3019
Query 4034 ATTGCCAAGATCTCAATTGCCCCGTACCGCAGTGCAGAGATAGGAAGGAAGTCTTGATTA 4093
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3020 ATTGCCAAGATCTCAATTGCCCCGTACCGCACTGCAGAGATAGGAAGGAAGTCTTGATTA 3079
Query 4094 GGAAGGTGTAAAGGCACTAAAAGAGGAG 4121
|||||||||||||||||||| |||||||
Sbjct 3080 GGAAGGTGTAAAGGCACTAACAGAGGAG 3107
Score = 446 bits (241), Expect = 8e-124
Identities = 344/392 (88%), Gaps = 13/392 (3%)
Strand=Plus/Plus
Query 223 AGTCCTGAGTCGATTAGCTCTGCTAAGTTCATTGTGGAGAAGACA-TGTTTGATTCCAGT 281
||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 334 AGTCCCGAGTCGATTAGCTCTGCTAAGTTCATTGTGGAGAAGA-AGTGTTTGATTCCAGT 392
Query 282 ACCAAGTTTTGAGGAGGCTGCTACTAATGCTAGAAGATGTTTAAATACATCTTCTATACC 341
||||||||| |||||| |||| |||||||||||||||||||||||||||| | || ||
Sbjct 393 GCCAAGTTTTAAGGAGGTTGCTGCTAATGCTAGAAGATGTTTAAATACATCCCCAATGCC 452
Query 342 GGGAAGTAGCG-GTTCTGCTTCCGAGACAAACAGCGGTTCTGATATAACGAAGCAAGATT 400
|| ||||||| || |||||||| | ||||||||||||||||| ||||||||| |||||
Sbjct 453 GGTTAGTAGCGAGT-CTGCTTCCAACACAAACAGCGGTTCTGACATAACGAAGGAAGATA 511
Query 401 TTAAGAACGATTCTCCTTCGGATAGTAAGAAGGTTCAGGGTTCTAGTACTAGCAA--ATC 458
| |||||| ||||||||| |||||||||| | ||||||||| ||||||||||||| ||
Sbjct 512 TGAAGAACAATTCTCCTTTGGATAGTAAGGATGTTCAGGGTCCTAGTACTAGCAACGATA 571
Query 459 TG----CA-AAA--CCGAAGGTAATCAAGGTTTATTCTTTCGTGGATCTGGTTACTACGA 511
| || ||| |||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 572 TAAAATCAGAAAAACCGAAGATAATCAAGGTTTATTCTTTCGCGGATCTGATTACTACGA 631
Query 512 CAAAGAAAGGAAACATTCAAACCGAGGAAAGTTCTTTAAACCATGAGAAGAAACTTGGAA 571
|||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 632 CAAACCGAGGAAACATTCAAACAAAGGAAAGGTCTTTAAACCATGAGAAGAAACTTGGAA 691
Query 572 CTGTTGTGGATATTGTTGAGCCGATGAAATGT 603
|| ||||||||||||||||||||||||||||
Sbjct 692 TTGGTGTGGATATTGTTGAGCCGATGAAATGT 723
Score = 237 bits (128), Expect = 5e-61
Identities = 187/214 (87%), Gaps = 9/214 (4%)
Strand=Plus/Plus
Query 991 AGTAAGGAGGTTCAGGGTTCTAGTACTAG---C------AAATCTGAAAAACCGAAGGTA 1041
|||||||| ||||||||| |||||||||| | ||||| |||||||||||| ||
Sbjct 535 AGTAAGGATGTTCAGGGTCCTAGTACTAGCAACGATATAAAATCAGAAAAACCGAAGATA 594
Query 1042 ATCAAGGTTTATTCTTTCGCGGATGTGGTTACTACGACAAAGAAAGGAAACATTCAAACC 1101
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 595 ATCAAGGTTTATTCTTTCGCGGATCTGATTACTACGACAAACCGAGGAAACATTCAAACA 654
Query 1102 GAGGAAAGTTCTTTGAACCATGAGAAGAAACTTGGAACTGTTGTGGATATTGTTGAGCCG 1161
||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 655 AAGGAAAGGTCTTTAAACCATGAGAAGAAACTTGGAATTGGTGTGGATATTGTTGAGCCG 714
Query 1162 ATGAAATGTGATGAAGGGACCAAGTGTGAGGTTA 1195
||||||||| | |||| |||||||||||||||||
Sbjct 715 ATGAAATGTAACGAAGTGACCAAGTGTGAGGTTA 748
Score = 196 bits (106), Expect = 9e-49
Identities = 163/189 (86%), Gaps = 9/189 (5%)
Strand=Plus/Plus
Query 802 AGTAAGGAGGTTCAGGGTTCTAGTACTAG---C------AAATCTGCAAAACTGAAGGTA 852
|||||||| ||||||||| |||||||||| | ||||| | ||||| |||| ||
Sbjct 535 AGTAAGGATGTTCAGGGTCCTAGTACTAGCAACGATATAAAATCAGAAAAACCGAAGATA 594
Query 853 ATCAAGGTTTATTCTTTCGCGGATGTGGTTACTACGACAAAGAAAGGAAACATTCAAACC 912
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 595 ATCAAGGTTTATTCTTTCGCGGATCTGATTACTACGACAAACCGAGGAAACATTCAAACA 654
Query 913 GAGGAAAGTTCTTTGAACCATGAGAAGAAACTTGGAACTGTTGTGGATATTGTTGAGCCG 972
||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 655 AAGGAAAGGTCTTTAAACCATGAGAAGAAACTTGGAATTGGTGTGGATATTGTTGAGCCG 714
Query 973 ATGAAATGT 981
|||||||||
Sbjct 715 ATGAAATGT 723
Score = 193 bits (104), Expect = 1e-47
Identities = 126/137 (92%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1439 TTACTACGACAAACAAAGGAAAGATTCAAACCGAGGAAAGGTCTTTGAACTATGAGAAGA 1498
|||||||||||||| |||||| |||||||| ||||||||||||| ||| |||||||||
Sbjct 623 TTACTACGACAAACCGAGGAAACATTCAAACAAAGGAAAGGTCTTTAAACCATGAGAAGA 682
Query 1499 AACTTGGAATTGGTGTGGATATTGTTGAGCCGATGAAATGTGATGAAGAGAACAAGTGTG 1558
||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 683 AACTTGGAATTGGTGTGGATATTGTTGAGCCGATGAAATGTAACGAAGTGACCAAGTGTG 742
Query 1559 AGGTTAATGCTGACACA 1575
|||||||||||||||||
Sbjct 743 AGGTTAATGCTGACACA 759
Score = 178 bits (96), Expect = 3e-43
Identities = 116/126 (92%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1316 TTACTACGACAAACAAAGGAAACACTCAAACCGAGGAAAGGTCTTTGAACCATGAGAAGA 1375
|||||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 623 TTACTACGACAAACCGAGGAAACATTCAAACAAAGGAAAGGTCTTTAAACCATGAGAAGA 682
Query 1376 AACTTGGTATTGGTGTGGATATTGTTGAGCCGATGAAATGTGATGAAGGGACCAAGTGTG 1435
||||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 683 AACTTGGAATTGGTGTGGATATTGTTGAGCCGATGAAATGTAACGAAGTGACCAAGTGTG 742
Query 1436 AGGTTA 1441
||||||
Sbjct 743 AGGTTA 748
Score = 161 bits (87), Expect = 3e-38
Identities = 113/126 (90%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1193 TTACTACGACAAACAAAGGAAAGATTCACACCGAGGAAAGGTCTTTGAACCATGAGAAGA 1252
|||||||||||||| |||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 623 TTACTACGACAAACCGAGGAAACATTCAAACAAAGGAAAGGTCTTTAAACCATGAGAAGA 682
Query 1253 AACTTGGAACTGTTGTGGATATTGTTGAGCCGATGAAATGTGATGAAGGGAGCAAGTGTG 1312
||||||||| || |||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 683 AACTTGGAATTGGTGTGGATATTGTTGAGCCGATGAAATGTAACGAAGTGACCAAGTGTG 742
Query 1313 AGGTTA 1318
||||||
Sbjct 743 AGGTTA 748
Score = 126 bits (68), Expect = 1e-27
Identities = 150/185 (81%), Gaps = 24/185 (13%)
Strand=Plus/Plus
Query 1 ATGGCTCCACCGCGTAAAAGGACAAGGGACTTGATGCCTAAGTT-TCTT-A-AC--A-CC 54
||||| ||||||||||||||| || || ||||||||||| | || |||| | || | ||
Sbjct 22 ATGGCGCCACCGCGTAAAAGGCCATGGAACTTGATGCCT-ATTTATCTTAACACTAAGCC 80
Query 55 ----G-A--A--AG-TTTTGATGAGTTCAATCAGCGGTTGAACAATCTACCTGCAGAGTC 104
| | | || ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 81 TGATGAATCAGGAGATTTCGATGAGTTCAATCAGCGGTTGAACAATCTACCTGCGGAGTC 140
Query 105 AAATGTTACGTCTGATGAAGATGCACAGTTTC-T---T-GA-ATCGAGAAAATGTCAGTC 158
|||||||| ||||||||||| |||||||||| | | || ||||||||||| ||||||
Sbjct 141 GAATGTTACATCTGATGAAGACGCACAGTTTCGTAGATCGAGATCGAGAAAATCTCAGTC 200
Query 159 -AAAG 162
||||
Sbjct 201 GAAAG 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159270943005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5