BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67250.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925966 jgi|Araly1|925966|scaffold_201527.1 713 0.0
Ahg947975 jgi|Araly1|947975|scaffold_704204.1 405 2e-112
> Ahg925966 jgi|Araly1|925966|scaffold_201527.1
Length=470
Score = 713 bits (386), Expect = 0.0
Identities = 434/457 (95%), Gaps = 4/457 (1%)
Strand=Plus/Plus
Query 80 gaagTA-AACAATGGAGTCTGAGAAAAAGATAGCTCATGAGATCGGTGGTGTCAAAAACG 138
|||||| ||||||||||||| |||| |||||||||||||||||||||||||| || || |
Sbjct 10 GAAGTAGAACAATGGAGTCTCAGAAGAAGATAGCTCATGAGATCGGTGGTGTTAAGAATG 69
Query 139 ACGCTCTTCGATTTGGTCTTCACGGCGTTAAGAGCAACATCATCGGATCTCACCCACTCG 198
||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||| |
Sbjct 70 ACGCTCTCCGATTTGGTCTCCACGGCGTTAAAAGCGACATCATCGGATCTCACCCACTTG 129
Query 199 AATCGTCATACGAATCTGAAAAGAAATCGAAAGAGGCGTTGAAGAGGACGGTCATTGCGC 258
|||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 AATCCTCTTACGAATCTGAAAAGAAATCGAAAGAGGAGTTGAAGAGGACGGTCATTGCGC 189
Query 259 ATGCCTACGGGACTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGT 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 ATGCCTACGGGACTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGT 249
Query 319 TTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTCGGTTTAGAAGTCTACACGGGAG 378
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 250 TTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTTGGTTTAGAAGTCTACACAGGAG 309
Query 379 CTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCTCGTGATTCCGAGACATTCA 438
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 310 CTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGATTCCGAGACATTCA 369
Query 439 AGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGGCATCTCAAAGGGACCGATTT 498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 370 AGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGGCATCTCAAAGGGACCGGTTA 429
Query 499 ACCCAAGTTTCATGTAA--C-CCTTCATGGGTGGttt 532
||||||||||||||||| | || |||||||||||||
Sbjct 430 ACCCAAGTTTCATGTAAGGCTCCCTCATGGGTGGTTT 466
> Ahg947975 jgi|Araly1|947975|scaffold_704204.1
Length=466
Score = 405 bits (219), Expect = 2e-112
Identities = 363/432 (84%), Gaps = 12/432 (3%)
Strand=Plus/Plus
Query 89 AATGGAGTCTGAGAAAAAGATAGCTCATGAGATCGGTGGTGTCAAAAACGACGCTCTTCG 148
|||||| || ||||| |||||||||||||||||||| ||| | || ||||| ||||||||
Sbjct 20 AATGGATTCGGAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGATGCTCTTCG 79
Query 149 ATTTGGTCTTCACGGCGTTAAGAGCAACATCATCGGATCTCACCCACTCGAATCGTCATA 208
|||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||| | ||
Sbjct 80 CTTTGGTCTTCACGGTGTTAAGAGCGATATCATTGGATCTCACCCTCTCGAATCGGCCTA 139
Query 209 CGAATCTGAAAAGAAATCGA-AAGAGGCGTTGAAGAGGACGGTCATTGCGCATGCCTACG 267
|||||||| ||||||||| | |||| | ||||||||| || ||| ||||| | ||
Sbjct 140 CGAATCTGGAAAGAAATC-ACAAGAAGAAATGAAGAGGAAAGTGATTACGCATACTTA-T 197
Query 268 GGA-CTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGTTTCAGAGA 326
||| |||| ||||| |||||||||||| | ||||| ||||| || || ||||||||||||
Sbjct 198 GGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTAGGTTTCAGAGA 257
Query 327 CCTCCTGGACCAATTCCGTCGTCGATGCTCGG-TTTAGAAGTCTACACGGGAGCTGTGGA 385
||||||||||||||| | || || ||||| || || ||||||||||| |||||| | ||
Sbjct 258 CCTCCTGGACCAATTGCTTCATCAATGCTTGGCCTT-GAAGTCTACACAGGAGCTATAGA 316
Query 386 TGACTTTGGTTTTGAGGATTACTTGAATGATCCTCGTGATTCCGAGACATTCAAGCCGGT 445
||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||| || ||
Sbjct 317 TGATTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGAATCCGAGACACTCAAACCAGT 376
Query 446 AGACTTCCACCACGGGATGGAAGTTCGTCTTGG-CATCTC-AAAGGGACCGATTTACCC- 502
|||||| |||||||| ||||||||||| ||||| | |||| ||||| || | || |||
Sbjct 377 AGACTTTCACCACGGAATGGAAGTTCGGCTTGGTC-TCTCCAAAGGC-CC-AGTTCCCCC 433
Query 503 AAGTTTCATGTA 514
||||||||||||
Sbjct 434 AAGTTTCATGTA 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5