BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67260.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338960 jgi|Araly1|338960|fgenesh1_pg.C_scaffold_2001059 1171 0.0
> Ahg338960 jgi|Araly1|338960|fgenesh1_pg.C_scaffold_2001059
Length=1035
Score = 1171 bits (634), Expect = 0.0
Identities = 906/1032 (88%), Gaps = 40/1032 (4%)
Strand=Plus/Plus
Query 23 ACAACGATGGTAATAACAATGGAGTGTACCCTCTCTCTCTTTACCTTTCTTCACTCTCTG 82
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 14 ACAATGATGGTAATAACAATGGAGCGTACCCTCTCTCTCTTTACCTTTCTTCACTCTCTG 73
Query 83 GCCATCAAGACATCATTCATAATCCCTACAACCATCAGTTAAAAGCATCTCCGGGCCATA 142
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 74 GCCATCAAGACATCATTCATAATCCATACAACCATCAGTTAAAAGCATCTCCGGGCCATA 133
Query 143 TGGTATCAGCAGTTCCTGAATCTCTGATCGATTACATGGCGTTTAAGTCAAATAATGTTG 202
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 134 TGGTATCAGCAGTTCCTGAATCTCTGATCGATTACATGGCGTTTAACTCAAACAATGTTG 193
Query 203 TGAATCAACAAGGCTTTGAGTTTCCTGAGGTGTCAAAGGAAATCAAGAAGGTGGTGAAGA 262
||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 194 TGAATCATCAAGGCTTTGAGTTTCCTGAGGTGTCCAAGGAAACCAAGAAGGTGGTGAAGA 253
Query 263 AGGACCGACATAGCAAGATTCAAACGGCACAAGGGATTAGAGACAGGAGGGTTAGGCTTT 322
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 254 AGGACCGACATAGCAAGATTCACACGGCACAAGGGCTTCGAGACAGGAGGGTTAGGCTTT 313
Query 323 CTATTGGGATTGCTCGCCAATTCTTTGATCTTCAGGATATGTTGGGGTTTGATAAAGCTA 382
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 314 CTATTGGGATTGCTCGCCAATTCTTCGATCTTCAGGATATGTTGGGGTTTGATAAAGCCA 373
Query 383 GTAAAACGTTAGACTGGCTGCTCAAGAAGTCAAGAAAAGCCATCAAAGAGGTCGTACAAG 442
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 374 GTAAAACGTTAGACTGGCTGCTCAAGAAATCAAGAAAAGCCATCAAAGAGGTCGTACAAG 433
Query 443 CAAAAAACCTCAACAATGATGATGAAGATTTTGGAAACATTGGAGGCGATGTAGAACAAG 502
|||||| ||||||||||| ||||||||||||||||||| |||||| ||||| ||| |
Sbjct 434 AAAAAAATCTCAACAATGAAGATGAAGATTTTGGAAACAATGGAGGTGATGTGGAA---G 490
Query 503 AAGAGGAGAAGGAGGAGGATGACAATGGCGATAAGAGCTTCGTGTATGGTTTGAGCCCCG 562
|||||||| |||||||||| || |||||||||||| || ||||||||| |||||||
Sbjct 491 AAGAGGAGGAGGAGGAGGAAGA---TGGCGATAAGAGTTTTTTGTATGGTTCAAGCCCCG 547
Query 563 GGTACGGTGAAGAAGAAGTGGTATGTGAGGCCACGAAGGCAGGGATA-AGAAAGAAGAAG 621
| | | | |||| ||||||||||||||| || |||||||| || | ||||||||||||
Sbjct 548 ATTCCTGCGGAGAAAAAGTGGTATGTGAGGTCAAGAAGGCAGAGA-AGAGAAAGAAGAAG 606
Query 622 AGTGA-GTTGAGAAACATCTCATCAAAGGGG-CTAGGAGCCAAAGCTAGAGGAAAAGCAA 679
||||| || || ||||| |||||| |||| | || |||||||||||||||||||||||
Sbjct 607 AGTGAAGTA-AGCAACATGTCATCAGAGGGATCAAG-AGCCAAAGCTAGAGGAAAAGCAA 664
Query 680 AGGAGCGAACAAAAGAGATGATGGCCTATGATAATCCAGAGACTGCCTCTGATATTACAC 739
||||| | || | ||||||| |||| || || | ||| ||||| ||||
Sbjct 665 AGGAG--A----------TG--G-CCTATGACCATCCGGAAACCGTCTCAGATATCACAC 709
Query 740 AATCTGAAATCATGGACCCATTCAAGAGGTCTATAGTCTTCAATGAAGGAGAAGATATGA 799
||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||
Sbjct 710 AATCTGAAATCATGGACCCATTCAATAGGTCTATAATCTTTAATGAAGGAGAAGACATGA 769
Query 800 CACAC-CTTTTCTACAAGGAACCAATCGAGGAGTTTGATAATCAAGAATCTATCTTAACC 858
|||| |||| |||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 770 CACATTCTTT-CTACAAGGAAGCAATCGAAGAGTTTGATATTCAAGAATCTATCTTAACC 828
Query 859 A--ATATGA--C--TCTACCAACGAAGATGGGTCAAAGTTACAATCAAAATAATGGGATA 912
| | | | | |||||| |||| |||||| |||||||||||||| |||||||| |
Sbjct 829 ACGAGAAGGTTCAATCTACCGGCGAATATGGGTGAAAGTTACAATCAACGTAATGGGACA 888
Query 913 CTTATGTTGGTAGATCAGAG-TTCTAGCAGCAACTATAATAC-ATT--TCTGCCTCAAAA 968
|||||||| ||||||| || ||||| ||||||||| ||| | ||| |||||||||||
Sbjct 889 TTTATGTTGATAGATCA-AGGTTCTACCAGCAACTACAATGCCATTGATCTGCCTCAAAT 947
Query 969 TTTGGATTATAGTTATGATCAAAACCCTTTTCATGACCAAACCTTATATGTAGTCACCGA 1028
||||||||||| |||||||| ||||||||| |||||||| ||| | || |||||||||
Sbjct 948 TTTGGATTATAACTATGATCAGAACCCTTTTGTTGACCAAAGCTTTTGTGCAGTCACCGA 1007
Query 1029 CAAAAATTTCCC 1040
|| ||||||||
Sbjct 1008 CACGAATTTCCC 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5