BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67270.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475882 jgi|Araly1|475882|fgenesh2_kg.2__1012__AT1G67780.1 1498 0.0
Ahg925969 jgi|Araly1|925969|scaffold_201530.1 771 0.0
Ahg947146 jgi|Araly1|947146|scaffold_703375.1 551 7e-156
> Ahg475882 jgi|Araly1|475882|fgenesh2_kg.2__1012__AT1G67780.1
Length=1584
Score = 1498 bits (811), Expect = 0.0
Identities = 1313/1549 (85%), Gaps = 59/1549 (4%)
Strand=Plus/Plus
Query 168 AATCCCGGTGTTAGAGTTGTCGGAAAAAGAATTTATGACTCCCA-AAATGGCAAATCATG 226
||||| ||||||||||| |||||| |||||| || || | ||| ||||||||| | ||
Sbjct 40 AATCCTGGTGTTAGAGTCGTCGGAGGAAGAATCTACGA-TTCCAGTAATGGCAAAACCTG 98
Query 227 TCACCAGTGTCGACAGAAGACTCTTGACTTTGCTGCACCGTGCAAGGCAATG-AGGAGGA 285
||||||||||||||||||||| | ||||| | ||| |||||||||||||| || |||
Sbjct 99 TCACCAGTGTCGACAGAAGACGATGGACTTCGTTGCGTCGTGCAAGGCAATGAAGAAGG- 157
Query 286 AGAAGCTATGTCCCATAAAGTTTTGTTACAAATGCTT-ATCAATCAGGTATGGTGAAAAT 344
| |||| |||| |||| || |||||| | || || || || || |||||||||||| |||
Sbjct 158 ACAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTAAT-AAACAGGTATGGTGAGAAT 216
Query 345 GCAGAAGAAGTAGCAAAGTTGGATGATTGGATATGTCCTCTGTGCAGAGGCATCTGC-AT 403
|||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| ||
Sbjct 217 GCAGAAGAAGTAGCAAAGTTGGATGACTGGATGTGTCCTCAGTGTAGAGGCATCTGCAAT 276
Query 404 CTGTAGTGTATGCA-GAA-AAGCCCAAGGACTAGAGCCCACTGGGATTTTGGCACACGAA 461
|| ||| | |||| ||| || | ||| ||| | || |||||||| || |||||| ||
Sbjct 277 -TGCAGTTTTTGCAGGAAGAA--ACGAGGGCTAAATCCTACTGGGATATTAGCACACAAA 333
Query 462 GCTAAAGCCCGTGGA-TATTCCTCAGTCTATGCGCTTCTTGAAGCTGAGGGGCATGATAA 520
||||||||| ||||| || | || |||| | ||||||||||| |||||||||||||||
Sbjct 334 GCTAAAGCCAGTGGATTA-GCTTCGGTCTCTATGCTTCTTGAAGTTGAGGGGCATGATAA 392
Query 521 GTTTGCTTATCAGAAGAAACCAGAACTGGTACTGaaaaa-aaTTATACAAATCGTGGTTT 579
||||||||||||||||| ||| |||||||||| ||||| ||||| ||||||| | |||
Sbjct 393 CTTTGCTTATCAGAAGAAGCCAAAACTGGTACT-AAAAACAATTACACAAATCTTAATTT 451
Query 580 TAGT-TTC-T-GCT-----TG--CA----AT-GAAGGTAGTAGTAGCAATAGTGAATCTG 624
| || || | ||| || | || |||||||||||| | |||||||| ||||
Sbjct 452 TTGTGATCTTAGCTCCAAATGATGATTTTATGGAAGGTAGTAGTGGGAATAGTGATTCTG 511
Query 625 TTCCAGGGACAGAAGTGGGAA-TA-TTAGATGTTCCCAAGGAGAAGAAGAAAGTGGTGGA 682
|| | |||||||| || ||| || | |||||| |||||||||| || ||||||||||
Sbjct 512 TTTCTGGGACAGATGT-TGAAGTAGCT-GATGTTGCCAAGGAGAATAAAAAAGTGGTGGG 569
Query 683 CAAGAGGAAGAGAGCCAAACCCAGTGACAAACTGAAAGAGGAGATTCAGCTTGAGGCTCA 742
|||||| |||| ||||||| ||| | |||| |||||||||||||||||| ||||||||||
Sbjct 570 CAAGAGCAAGAAAGCCAAAGCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCA 629
Query 743 ACTTCCTGAGGGTATAAGCTTGACTTGTGTTTCACGCATTGATATACCAACTGAAGAAGC 802
||| || ||||| ||||||||| || ||||||| |||||| ||||||||||||||||||
Sbjct 630 ACTGCCACAGGGTCTAAGCTTGAATTCTGTTTCAGGCATTGTTATACCAACTGAAGAAGC 689
Query 803 TGGAAATGTATGTC-AGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCACTTGCTTTGA 861
||||||||||| || ||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 690 TGGAAATGTAT-TCCAGCTTTTTGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGATTTGA 748
Query 862 AGGAAGGACATGCTGAAACTATTGTCCGTGAGCTGTT-TATATGTGGGCGTAACACAAGG 920
|||||||||| ||||||||| |||| |||||||| || | |||||||||||||||||||
Sbjct 749 AGGAAGGACAAGCTGAAACTGTTGTTCGTGAGCTCTTCTC-ATGTGGGCGTAACACAAGG 807
Query 921 AGACAACAATACTGCTCTATTACTC-AGATGATGATCCAGTTGTTGGATTTAATATCAAA 979
|||||||| ||||||||||||| || || |||||||||| ||||||||| |||||||| |
Sbjct 808 AGACAACAGTACTGCTCTATTA-TCCAGCTGATGATCCAATTGTTGGATCTAATATCACA 866
Query 980 GGATAGAGAGATGTCTTTGTCTCTAAGTGCAACGGACAGCAGTTGGTTCACGGCTATAGG 1039
||||||||| ||||| |||||||||||| | | ||||||||||||||||| ||| | ||
Sbjct 867 GGATAGAGAAATGTCCCTGTCTCTAAGTGTATCTGACAGCAGTTGGTTCACTGCTCTTGG 926
Query 1040 AGAGATCCTATCGAAGTCAGAAGTTTTGAGTGATGAGCTCCCAC-TAGAAACTTTTGTAG 1098
||||||| ||| | |||||||| |||||||||||| | |||||| | ||||||||| ||
Sbjct 927 AGAGATCTTATTGCAGTCAGAATTTTTGAGTGATGTGTTCCCACCT-GAAACTTTTAAAG 985
Query 1099 GGGGTGTTGCTGCGTATGAGAAGATGAATGCATCAAGAAAG-CTCAAGCTTCTAAA-TTT 1156
|||||||||| ||||||||||||| ||||||||| |||| ||||||||||| || |||
Sbjct 986 TAGGTGTTGCTGAGTATGAGAAGATGGATGCATCAA-AAAGGCTCAAGCTTCTCAACTTT 1044
Query 1157 CTTATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTACATAAATAGCCAAACTGA 1216
| ||||||||||||||||||||| || ||||||||||||| ||| || ||||| | | |
Sbjct 1045 GT-ATGTGATGAATCACTTAGCACCTGTGCAATGAGGAATTGCATTAAGAGCCAGAGT-A 1102
Query 1217 -AGAGTGTGGAG-AACGGAAAAAGGAAGCTAAACA-AAAGGCTGCAGCCGCAAAGCAAAA 1273
||||||| || || || || ||||||||| | |||||| ||| |||||||| ||||
Sbjct 1103 CAGAGTGTAAAGCAAAT-AACAACGAAGCTAAA-AGAAAGGCCGCAACCGCAAAGGAAAA 1160
Query 1274 GGAGAAGCAGCTCAAACAGAAGATGCAAGGTGAGGTTGCCAAATCCATTATGGAGAAAAA 1333
|||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||
Sbjct 1161 GGAGAAGCAGCTCAAACAGAAGTTGCAAGGTGATGTTGCCAAAGCCATTATGAAGAAAAA 1220
Query 1334 CGGAGCTCCATTGTCTATTGAGGAACACAACTCAAT-CGTGTCTCAAATAAGAGATGAAG 1392
||||||||||||||| ||||||||||||||| |||| | ||||||||||||||| |||||
Sbjct 1221 CGGAGCTCCATTGTCCATTGAGGAACACAACGCAATTC-TGTCTCAAATAAGAGCTGAAG 1279
Query 1393 CTAAAGAAGCTCATGAAGAAATGATGGAGGCAAAGGGCATGAAATCTAAAATGACGCTTA 1452
|||||||||||||||| |||||||||||||||||||||||| | || || ||||| ||
Sbjct 1280 CTAAAGAAGCTCATGATGAAATGATGGAGGCAAAGGGCATGGCAGCTGGAACGACGCGTA 1339
Query 1453 TATGTGATGCGCGTAGAACGGAACCAATCATGTTGGATGATAATGGTTTTGTTCTCTGGA 1512
||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||
Sbjct 1340 TATGTGATGCGCGTAGAACTGAACCAATCATGGTGGAAGATAATGGTCTTGTTCTCTGGA 1399
Query 1513 AATTGAAGTGTTTTGAAGAAGAAC-AAttttttttGCTTCAAGATCTAGGAACATTTGAT 1571
||||||| || | | ||||||||| || |||||| |||||||||| ||||||||||||||
Sbjct 1400 AATTGAACTGCTATAAAGAAGAACCAAATTTTTT-GCTTCAAGATTTAGGAACATTTGAT 1458
Query 1572 GATTTATGTCCACATGAAAGATGGTTAGCTTTTAAACCTGAGCAGAAACCAGAGATAGAG 1631
| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1459 GGTTTATGTCCACATGAAAAATGGTTAGCTTTTAAGCCTGAGCAGAAACCAGACATAGAG 1518
Query 1632 AA-TATATCTCTTGTAAGAGGTAAGAAACTGATGCAAATACAAAAGAAT 1679
|| |||||||||| |||||| | |||| |||||||||| || ||||||
Sbjct 1519 AACTATATCTCTTACAAGAGG-AGGAAAGTGATGCAAATGCAGAAGAAT 1566
> Ahg925969 jgi|Araly1|925969|scaffold_201530.1
Length=1336
Score = 771 bits (417), Expect = 0.0
Identities = 551/611 (90%), Gaps = 27/611 (4%)
Strand=Plus/Plus
Query 1100 GGGTGTTGCTGCGTATGAGAAGATGAATGCATCAAGAAAGCTCAAGCTTCTAAATTTCTT 1159
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 711 GGGTGTTACTGCGTATG-GAACATGAATGCATCAAGAAAGCTCAAGCTTCTAAATTTCTT 769
Query 1160 ATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTACA-TAAATAGCCAAACTGA-A 1217
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |
Sbjct 770 ATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTACATTAAA-AGCCAAACT-AGA 827
Query 1218 GAGTGTGGAGAACGGAAAAAGGAAGCTAAACAAAAGGCTGCAGCCGC-AAAGCAAAAGGA 1276
||||||||||||| |||||| ||||||||| |||| ||| ||||||| |||| |||||||
Sbjct 828 GAGTGTGGAGAACAGAAAAAAGAAGCTAAAGAAAAAGCTTCAGCCGCAAAAG-AAAAGGA 886
Query 1277 GAAGCAGCTCAAACAGAAGATGCAAGGTGAGGTTGCCAAATCCATTATGGAGAAAAACGG 1336
|||| ||||||||| | || | |||| | || | | ||||||||||||
Sbjct 887 GAAGGAGCTCAAAC-----A---AA--T---GTTG-C-AA--GGTGA-GGAGAAAAACGG 928
Query 1337 AGCTCCATTGTCTATTGAGGAACACAACTCAATCGTGTCTCAAATAAGAGATGAAGCTAA 1396
||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 929 AGCTCCATTGTTTATTGAGGAACACAAGTCAGTTGTGTCTCAAATAAGAGATGAAGCTAA 988
Query 1397 AGAAGCTCATGAAGAAATGATGGAGGCAAAGGGCATGAAATCTAAAATGACGCTTATATG 1456
| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 989 AAAAGCTCATGAAGAAATGATAGAGGCAAAGGGCATGAAATCTGGAATGACGCTTATATG 1048
Query 1457 TGATGCGCGTAGAACGGAACCAATCATGTTGGATGATAATGGTTTTGTTCTCTGGAAATT 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 TGATGCGCGTAGAACGGAACCAATCATGTTGGATGATAATGGTTTTGTTCTCTGGAAATT 1108
Query 1517 GAAGTGTTTTGAAGAAGAACAAttttttttGCTTCAAGATCTAGGAACATTTGATGATTT 1576
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1109 GAAGTGTTTTGAAGAAGAACAAATTTTTTTGCTTCAAGATCTAGGAACATTTGATGATTT 1168
Query 1577 ATGTCCACATGAAAGATGGTTAGCTTTTAAACCTGAGCAGAAACCAGAGATAGAGAA-TA 1635
|||||||||||||| |||| || ||||||| |||||||||||||||||||||||||| ||
Sbjct 1169 ATGTCCACATGAAAAATGGCTAACTTTTAAGCCTGAGCAGAAACCAGAGATAGAGAAATA 1228
Query 1636 TATCTCTTGTAAGAGGTAAGAAACTGATGCAAATACAAAAGAATGAAAATCCGAAAAAGA 1695
|||||||| |||||| | ||||||||||| || ||||||||| | |||| | |||||||
Sbjct 1229 TATCTCTTCCAAGAGG-AGGAAACTGATGCGAACACAAAAGAAAGCAAATGCAAAAAAGA 1287
Query 1696 ATGCAAATGCG 1706
|||||||||||
Sbjct 1288 ATGCAAATGCG 1298
Score = 340 bits (184), Expect = 2e-92
Identities = 208/220 (95%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 688 GGAAGAGAGCCAAACCCAGTGACAAACTGAAAGAGGAGATTCAGCTTGAGGCTCAACTTC 747
|||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 490 GGAAAAAAGCCAAATCCAGTGACAAACTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTC 549
Query 748 CTGAGGGTATAAGCTTGACTTGTGTTTCACGCATTGATATACCAACTGAAGAAGCTGGAA 807
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 550 CTCAGGGTATAAGCTTGACTTGTGTTTCAGGCATTGATATACCAGCTGAAGAAGCTGGAA 609
Query 808 ATGTATGTCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCACTTGCTTTGAAGGAAG 867
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 610 ATGTATGTCAGCTTTTCGAGTTTTGCTCTGCTTTTGGAAAGGTTCTTGCTTTGAAGGAAG 669
Query 868 GACATGCTGAAACTATTGTCCGTGAGCTGTTTATATGTGG 907
|||||||||||||||||||||||||||||||||||||||
Sbjct 670 AACATGCTGAAACTATTGTCCGTGAGCTGTTTATATGTGG 709
Score = 265 bits (143), Expect = 1e-69
Identities = 182/201 (91%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 132 TAATTTACTGTTGTTATGGTGAGAAAGCGTGAAACCAATCCCGGTGTTAGAGTTGTCGGA 191
||||||||||||||||||| || |||||||||||||||||| ||||||||| | |||||
Sbjct 6 TAATTTACTGTTGTTATGGCGAAAAAGCGTGAAACCAATCCTGGTGTTAGAATCATCGGA 65
Query 192 AAAAGAATTTATGACTCCCAAAATGGCAAATCATGTCACCAGTGTCGACAGAAGACTCTT 251
|||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 66 CGAAGAATATATGACTCCAAAAATGGCAAATCATGTCACCAGTGTCGACAAAAGACTCTT 125
Query 252 GACTTTGCTGCACCGTGCAAGG-CAATGAGGAGGAAGAAGCTATGTCCCATAAAGTTTTG 310
|||||||||||||| ||||||| || ||| |||||| |||||||||||||| ||||||||
Sbjct 126 GACTTTGCTGCACCATGCAAGGTCA-TGAAGAGGAACAAGCTATGTCCCATTAAGTTTTG 184
Query 311 TTACAAATGCTTATCAATCAG 331
||| ||||||||||||| |||
Sbjct 185 TTATAAATGCTTATCAAACAG 205
Score = 135 bits (73), Expect = 8e-31
Identities = 83/88 (94%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 330 AGGTATGGTGAAAATGCAGAAGAAGTAGCAAAGTTGGATGATTGGATATGTCCTCTGTGC 389
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 291 AGGTATGGTGAAAATGCAGAAGAAGTAGCAAAGTTGGATGATTGGATATGTCCACTGTGT 350
Query 390 AGAGGCATCTGCATCTGTAGTGTATGCA 417
||||||||||| ||||| ||||| ||||
Sbjct 351 AGAGGCATCTGTATCTGCAGTGTGTGCA 378
Score = 91.6 bits (49), Expect = 2e-17
Identities = 68/77 (88%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 474 GGA-TATTCCTCAGTCTATGCGCTTCTTGAAGCTGAGGGGCATGATAAGTTTGCTTATCA 532
||| || || |||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 416 GGATTA-TCTTCAGTCTATGAACTTCTTGAAGTTGAAGGGCATGATAAGTTTGCTTATCA 474
Query 533 GAAGAAACCAGAACTGG 549
|||||| ||| ||||||
Sbjct 475 GAAGAAGCCAAAACTGG 491
> Ahg947146 jgi|Araly1|947146|scaffold_703375.1
Length=1132
Score = 551 bits (298), Expect = 7e-156
Identities = 734/941 (78%), Gaps = 44/941 (5%)
Strand=Plus/Plus
Query 733 TTGAGGCTCAACTTCCTGAGGGTATAAGCTTGACTTGTGTTTCACGCATTGATATACCAA 792
|||||| |||| | ||||| | ||||| || |||| |||| | || ||||| ||||
Sbjct 192 TTGAGGTTCAAATGCCTGAAGTTATAAATTTAACTTCCGTTTTAGGCTTTGATGTACCTT 251
Query 793 CTGAAGAAGCTGGAAATGTATGTCAGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCA- 851
|||||||| ||||||| ||| ||| ||| | || ||||| |||| ||||||||||| |
Sbjct 252 TTGAAGAAGTTGGAAATTTATTTCAACTTCTAGAATTTTGTTCAGTCTTTGGAAAGG-AT 310
Query 852 CTTGCTTTGAAG-GAAGGACATGCTGA-AACTATTGTCCGTGAGCTGTTTAT-ATGTGGG 908
|| | |||| || |||||||| || | | ||||||| | ||||| ||| | | | | |
Sbjct 311 CTGGGTTTG-AGAGAAGGACAACCT-ACATCTATTGTGCACGAGCT-TTTTTCAAGCGAG 367
Query 909 CGTAACACAAGGAGACAACAATACTGCTCTATTA-CTCAGATGATGATCCAGTTGTTGGA 967
||| ||| |||| ||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 368 CGT-ACA-AAGG-GACAACAATACTGCTCTATTATCTC-GATGATAATCCAGTTGTTGGA 423
Query 968 TTTAATATCAAAGGATAGAGAGATGTCTTTGTCTCTAAGTGCAACGGACAGCAGTTGGTT 1027
||||||||| | |||||| | |||||||||||| |||||| || | | || ||||||
Sbjct 424 GTTAATATCACATGATAGAAATATGTCTTTGTCTTTAAGTGAAATTAATAACAATTGGTT 483
Query 1028 CACGGCTATAGGAGAGATCCTATCGAAGTCAGAAGTTTTGAGTGATGAGCTCCCA-CTAG 1086
|| ||||| || || | ||| |||||| | |||||| ||| |||| ||||| || |
Sbjct 484 CAATGCTATTGGGGATTTAGTATTGAAGTCGGGAGTTTTAAGTAATGAATTCCCACCT-G 542
Query 1087 AAACTTTTGTAGGGGGTGTTGCTGCGTATGA-GAAGATGAATGCATCAAGAAAGCTCAAG 1145
|||| ||| ||| |||| ||| |||| | | ||||| |||| ||||||| |||||||
Sbjct 543 AAACATTTAAAGGAGGTGATGCAAAGTATAATG-AGATGGATGCTTCAAGAAGGCTCAAG 601
Query 1146 CTTCTAAATTTCTTATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTA-CATAAA 1204
||||| || |||||||||||||||||||||| ||||| |||||||||||| || ||| ||
Sbjct 602 CTTCTGAACTTCTTATGTGATGAATCACTTACCACATTGGCAATGAGGAA-TATCATTAA 660
Query 1205 TAGCCAAACTGAAGAGTGTGGAG-AACGGAAAAAGGAAGCTAAACAAAAGGCTGCAGCCG 1263
| | ||| | |||| || || || |||||| ||||| |||||||||||| ||| |
Sbjct 661 GAACAAAATTTTGGAGTTTGAAGCAA-AGAAAAAAGAAGCAAAACAAAAGGCTACAGTTG 719
Query 1264 CAAAGCAAAAGGAGAAGCAGCTCA-AACAGAAGATGC-AAGGTGAGGTTGCC-AAATCCA 1320
|||| ||||||| || || || | | ||| ||||| || |||| ||||| ||||| |
Sbjct 720 CAAATAAAAAGGAAAAACAACTGAGGA-AGACGATGCGAA-GTGATTTTGCCAAAATCTA 777
Query 1321 TTATGGAGAAA-AACGGAGCTCCATTGTCTATTGAGGAACACAACTCAA-TCGTGTCTCA 1378
|| ||| ||| | ||||| ||| | || | ||| || || ||| || | |||||||
Sbjct 778 -TAAGGA-AAATACCGGAGTTCCGCTCTCCAGTGAAGAGCATAAC-AAACTTTTGTCTCA 834
Query 1379 AATAAGAGATGAAGCTAAAGAAGCTCATGAAGAAATGATGGAGGCAAAGGGCATGAA-AT 1437
| |||||| | ||||||||||||||||||| || ||||||||||||||| ||| || |
Sbjct 835 ACTAAGAGCTCAAGCTAAAGAAGCTCATGACGAGATGATGGAGGCAAAGAACAT-AATTT 893
Query 1438 CTAAAATGACGCTTATATGTGATGCGCG-TAGAACGGAACC-AATCATGTTGGATGATAA 1495
|||||| || || | |||||||| | |||||| | ||| || ||| | || || ||
Sbjct 894 CTAAAAAGATGCAAACATGTGATG-TTGTTAGAACTG-ACCAAAACATAATAGAGGACAA 951
Query 1496 TGGTTTTGTTCTCTGGAAA-TTGAAGTGTTTTGAAGAAGAA-CAAttttttttGCTTCAA 1553
||| |||||||||||||| || ||||||||||| |||||| ||| ||||||||||||
Sbjct 952 TGGACTTGTTCTCTGGAAACTT-AAGTGTTTTGAGGAAGAACCAA-AGTTTTTGCTTCAA 1009
Query 1554 GATCTAGGAACATTTGATGATTTATGTCCACATGAAAGATGGTTAGCTTTTAAACCTGAG 1613
|||||||||||||||||||||||| |||| |||||| ||||||||| ||||| ||||
Sbjct 1010 GATCTAGGAACATTTGATGATTTAAGTCCTTATGAAAAATGGTTAGCCTTTAAGGCTGAA 1069
Query 1614 CAGAAACCAG-AGATAGAGAA-TATATCTCTTGTAAGAGGT 1652
|||||| || |||||||||| | |||||||| |||||||
Sbjct 1070 CAGAAAG-AGGAGATAGAGAAATTTATCTCTTCCAAGAGGT 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5