BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67280.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475823 jgi|Araly1|475823|fgenesh2_kg.2__953__AT1G67280.1 2145 0.0
> Ahg475823 jgi|Araly1|475823|fgenesh2_kg.2__953__AT1G67280.1
Length=1407
Score = 2145 bits (1161), Expect = 0.0
Identities = 1356/1442 (94%), Gaps = 45/1442 (3%)
Strand=Plus/Plus
Query 44 TCTCTACCGTTGTCGTCACTTAATCTCCGACGGAGGAAAAGTAGCCACCGCTTGACGAAT 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TCTCTACCGTTGTCGTCACTTAATCTCCGACGGAGGAAAAGTAGCCACCGCTTGAAGAAT 60
Query 104 CATTCATCAACACACGCAGAGAGCTCTGAATCTCGAGGAAGAAGATGGTGAGGATCATTC 163
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTCATAAACACACACAGAGAGCTCTGAATCTCGAGGAAGAAGATGGTGAGGATCATTC 120
Query 164 CTATGGCTGCTTCCTCCATTCGACCTtccctcgcctgcttctctgattctcctcgcttcc 223
| |||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||
Sbjct 121 CCATGGCTGCTTCCTCCATTCGACCTTCCCTCACCTGCTTATCTTCTTCTCATCGCTTCC 180
Query 224 ccatctccctcctctccagaaatctctctcgcactctccatgttcctcAATCACAGCTTT 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATCTCCCTCCTCTCCAGAAATCTCTCTCGCACTCTCCATGTTCCTCAATCACAGCTTT 240
Query 284 TTGGTTTAACTTCTCATAAGCTTTTGAGAAGAAGTGTAAACTGTTTAGGAGTTGCTGAAT 343
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TTGGTTTAAATTCTCATAAGCTTTTGAGAAGAAGTGTAAACTGTTTAGGAGTGGCTGAAT 300
Query 344 CTGGTAAAGCAGCTCAAGC---T--A-CTA---CACAAGATGATCTTCTCACCTGGGTTA 394
|||||||| |||||||||| | | ||| ||||||||||||||||||||||||| |
Sbjct 301 CTGGTAAACCAGCTCAAGCTAGTACAGCTACTGCACAAGATGATCTTCTCACCTGGGTCA 360
Query 395 AGAATGATAAGAGAAGAATGCTTCATGTTGTTTATCGTGTTGGCGATATGGACCGGACGA 454
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AAAATGATAAGAGAAGAATGCTTCATGTTGTTTATCGTGTTGGCGATTTGGACCGGACGA 420
Query 455 TAAAGTTTTATACTGAATGTCTTGGGATGAAGCTTCTACGTAAGCGTGATATACCAGAAG 514
||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 421 TAAAGTTTTATACTGAATGTCTTGGAATGAAGCTTCTACGCAAACGTGATATACCGGAAG 480
Query 515 AGAAGTATACTAATGCTTTCCTTGGTTATGGACCGGAAGATTCACACTTTGTGATTGAGC 574
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AGAAGTATACAAATGCTTTCCTTGGTTATGGACCTGAAGATTCACACTTTGTGATTGAGC 540
Query 575 TTACTTATAATTATGGAGTTGACAAGTATGACATTGGGGCTGGTTTTGGTCACTTTGGTA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTACTTATAATTATGGAGTTGACAAGTATGACATTGGGGCTGGTTTTGGTCACTTTGGTA 600
Query 635 TTGCGGTCGATGATGTGGCGAAAACTGTAGAGCTTGTGAAAGCCAAAGGGGGAAAAGTAA 694
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 TTGCTGTCGACGATGTGGCGAAAACTGTAGAGCTTGTGAAAGCCAAAGGGGGAAAAGT-A 659
Query 695 G-CCGGGAGCCTGGTCCTGTCAAAGGTGGCAAAACTGTAATAGCATTCATTGAAGATCCT 753
| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 660 GCCCGGGAGCCTGGTCCTGTCAAAGGTGGCAAAACTGTGATCGCATTCATTGAAGATCCT 719
Query 754 GATGGTTACAAATTTGAACTCTTGGAAAGAGGTCCTACACCAGAACCTCTTTGCCAAGTT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATGGTTACAAATTTGAACTCTTGGAAAGAGGTCCTACACCAGAACCTCTTTGCCAAGTT 779
Query 814 ATGCTCCGTGTTGGTGATCTCGATAGGGCCATAAAGTTCTATGAGAAGGCTTTTGGAATG 873
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 ATGCTCCGTGTTGGTGATCTCGATAGGGCCATAAAGTTTTATGAGAAGGCTTTTGGAATG 839
Query 874 GAACTTCTGCGAACAAGAGACAACCCAGAGTACAAGTACACAATAGCCATGATGGGATAT 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAACTTCTGCGAACAAGAGACAACCCAGAGTACAAGTACACAATAGCCATGATGGGATAT 899
Query 934 GGTCCAGAAGATAAATTTCCTGTCCTAGAGCTGACATATAACTATGGTGTCACTGAATAT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGTCCAGAAGATAAATTTCCTGTCCTAGAGCTGACATATAACTATGGTGTCACTGAATAT 959
Query 994 GATAAAGGAAATGCTTATGCTCAGATAGCAATAGGGACGGATGATGTGTACAAAACTGCA 1053
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GATAAAGGAAATGCTTATGCACAGATAGCAATAGGGACGGATGACGTGTACAAAACTGCA 1019
Query 1054 GAAGCTATAAAACTCTTTGGGGGAAAAATCACGAGGGAGCCTGGTCCCTTACCAGGTATT 1113
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 GAAGCTATAAAACTCTTTGGGGGAAAAATCACGAGGGAACCTGGTCCCTTACCAGGTATA 1079
Query 1114 AGCACGAAGATCACCGCGTGTCTGGATCCTGATGGTTGGAAATCGGTATTTGTGGACAAC 1173
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 AGCACGAAGATCACCGCGTGTCTGGATCCTGATGGTTGGAAATCGGTCTTTGTGGACAAC 1139
Query 1174 ATTGACTTTCTCAAAGAACTGGAGTGAGAGGAGAAAGCAGAAGAGAGGCAACAAATGCAC 1233
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 ATTGACTTTCTCAAAGAACTGGAGTGAGAGGAGAAAGGAGAAGAGAGGCAACAAATGCAT 1199
Query 1234 GAAAATGGCTTATGAGGGAGACAGGAGGAGAGGCCTTGTTGTGAATTACATCAGTTTGGG 1293
||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||
Sbjct 1200 GAAAATGGCTTATGAGGGAGACAAGAGGAGATGCCTTGTTGTG--TTACATCGGTTTGGG 1257
Query 1294 GTTTGATATAATCTCTCTCAGTGCTGAATATTTTTATCAAAGTGAATGATTTGTTTTTCA 1353
|||||||||||| ||||||||| | || | ||||||||||| |||||||
Sbjct 1258 GTTTGATATAATATCTCTCAGT-C--AA-A-----------GTGAATGATTTTTTTTTCA 1302
Query 1354 GAATATAGTGTAGTTGTTTAATTTACAGTATAAAAGCCTATGTTGCGTCTTTGTATATTA 1413
|||| |||||||||||||| | ||| | | | || |||||||||||||||
Sbjct 1303 GAATCTAGTGTAGTTGTTT--T--ACA-T------G--T-TG---CGTCTTTGTATATTA 1345
Query 1414 GTTCCACTTAACATTAATTGCCAATAAATAAGATGATAAGTGAATGATATTCAAGAAAAA 1473
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1346 GTTCCACTTAACATTAATTGCCAATAAATAAGATGATAAGTGAATGATAAACAAGAAAAA 1405
Query 1474 AT 1475
||
Sbjct 1406 AT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5