BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67290.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475824 jgi|Araly1|475824|fgenesh2_kg.2__954__AT1G67290.1 2815 0.0
> Ahg475824 jgi|Araly1|475824|fgenesh2_kg.2__954__AT1G67290.1
Length=1979
Score = 2815 bits (1524), Expect = 0.0
Identities = 1719/1812 (95%), Gaps = 17/1812 (1%)
Strand=Plus/Plus
Query 230 TGAGGATCATACTTCATTGGAAGGCATG---GTTAAACGTGAAGCCCTCGAAGTAAAACC 286
||| |||||||||||||||||||||||| |||||||||||||| | ||||| |||||
Sbjct 176 TGATGATCATACTTCATTGGAAGGCATGACAATTAAACGTGAAGCCATGGAAGTGAAACC 235
Query 287 ACCAAAAGCTGGCAAAGGCAAAGGCAAAGGTAAAGGTCGTGGCACCGTTGCCGCAGGACC 346
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 236 ACCAAAAGCTGGCAAACGCAAAGGTAAAGGTAAAGGTCGTGGCACCGTCGCCGCAGGACC 295
Query 347 TGAGATGAATTGGCCTGGACAATGGGAGTTATTCATGAAGAATTCTGGTGTTTCAGCCAT 406
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 296 TGAGATGAATTGGCCTGGACAATGGGAGTTATTCATGAAGAATTCTGGTGTATCAGCCAT 355
Query 407 GCACGCAATTTTGATGCCTTTGATCAATAAAGTTCAGTTTTACGACGCAACCATTTGGAG 466
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 356 GCACGCAATTTTGATGCCTTTGATTAATAAAGTTCAGTTTTACGACGCAACCATTTGGAG 415
Query 467 AATTTCACAAATCAAATTGCCTCCAGGCGTACCTTGCCATGTTTTTGACGCCaaaa--aa 524
||||||||||||||| |||||||| |||||| |||||||||||| ||| ||||||
Sbjct 416 AATTTCACAAATCAAGTTGCCTCCTGGCGTAGCTTGCCATGTTTATGA--CCAAAAGGCG 473
Query 525 aaTAAAGTTGATTGTTGGGCTCACTCTGTCCTCGTCGATATTAACACCGGAGACATCAAG 584
|| ||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 474 AACAAAATTGATTGTTGGGCTCACTCTGTCCTCGTTGATATCAACACCGGAAACATCAAG 533
Query 585 CCTCTTGCGCTTACAACAGACACATGGTGTTCTTCTGGAGGTTTAACCGTAAACGGTACT 644
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 534 CCTCTTGCGCTTACAACAGACACATGGTGTTCGTCGGGAGGTTTAACCGTAAACGGTACT 593
Query 645 TTGGTAAGTACTGGAGGATTCCAAGGAGGAGCAAACACGGCAAGGTACCTATCCACATGC 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 594 TTGGTAAGTACTGGAGGATTCCAAGGAGGAGCAAACACGGCAAGGTACCTATCCACCTGC 653
Query 705 GAAAACTGTGTATGGATTGAATATCCAAAGGCACTCGCTGCAAGGAGATGGTACTCAACA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAAAACTGTGTATGGATTGAATATCCAAAGGCACTCGCTGCAAGGAGATGGTACTCAACA 713
Query 765 CAAGCCACTCTTCCTGATGGAACTTTCATCGTTGTTGGAGGCCGTGACGCTCTCAACTAC 824
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 714 CAAGCCACTCTTCCCGATGGCACTTTCATCGTTGTTGGAGGCCGCGACGCTCTCAACTAC 773
Query 825 GAGTATATCCTTCCGGAAGGACAAAACAACAAGAAACTCTATGACTCACAACTTCTTAGA 884
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GAGTATATCCTTCCAGAAGGACAAAACAACAAGAAACTCTATGACTCACAACTTCTTAGA 833
Query 885 CAAACAGATGATCCAGAAGAAAACAATCTTTACCCTTTTGTTTGGCTTAACACTGATGGT 944
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 834 CAAACAGATGATCCAGAAGAAAACAATCTTTACCCTTTTGTTTGGCTTAATACCGATGGT 893
Query 945 AACCTCTTCATTTTCGCCAACAACCGATCCATTCTTCTTAGCCCGAAAACAAACAAAGTG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 894 AACCTCTTCATTTTCGCCAACAACCGATCCATTCTTCTTAGCCCGAAAACAAATAAAGTG 953
Query 1005 CTCAAAGAGTTCCCTCAACTTCCCGGTGGTGCCCGTAACTACCCTGGTTCCGCCTCCTCG 1064
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 954 CTCAAAGAGTTCCCTCAACTTCCCGGTGGTGCCCGTAACTACCCTGGTTCCGCCTCTTCG 1013
Query 1065 GCTCTTCTCCCCATCCGCCTCTACGTCCAAAACCCCGCTATCATCCCCGCTGATGTCCT- 1123
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1014 GCTCTTCTCCCCATCCGCCTCTACGTTCAAAACCCCGCTGTCATCCCCGCTGATGTCCTC 1073
Query 1124 AGTTTGCGGTGGTGCAAAACAAGACGCTTACTTCCGTGCAGAGAGGTT-AAAGATTTACG 1182
| |||| ||||||||||||||||||||||||||||| || |||| ||| ||| |||||||
Sbjct 1074 A-TTTGTGGTGGTGCAAAACAAGACGCTTACTTCCGCGCTGAGAAGTTGAAA-ATTTACG 1131
Query 1183 ATTGGGCCTTGAAAGATTGTGCAAGGTTAAACATCAATAGTGCTAAGCCTGTATGGAAAA 1242
||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1132 ATTGGGCCTTGAAGGATTGTGCAAGGATAAGCCTCAATAGTGCTAAGCCTGTATGGAAAA 1191
Query 1243 CAGAGACCATGCCAACGTCACGTGTGATGAGTGATACTGTGATCCTTCCTAATGGAGAAA 1302
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1192 CAGAGACCATGCCAATGTCACGTGTGATGAGTGATACTGTGATCCTCCCAAATGGAGAAA 1251
Query 1303 TTCTTATCATTAATGGTGCAAAACGTGGCTCCTCTGGTTGGCACTTAGCCAAAGAACCAA 1362
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1252 TTCTTATTATTAATGGTGCAAAACGTGGCTCCTCCGGTTGGCACTTAGCCAAAGACCCAA 1311
Query 1363 ATTTTGCTCCACTCTTGTACAAACCTAACAAACCTTTAGGCCAACGTTTCAAAGAACTCG 1422
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1312 ATTTTGCTCCACTCTTGTACACACCTAACAAACCTTTAGGCAAACGTTTCAAAGAACTCG 1371
Query 1423 CTCCTTCCACTATCCCTCGTGTGTACCATTCCATCGCAATCGCTCTTCCTGATGGTAAAG 1482
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CTCCTTCCACTATCCCTCGCGTGTACCATTCCATCGCAATCGCTCTTCCTGATGGTAAAG 1431
Query 1483 TTCTCGTCGGTGGAAGCAACACCAACAACGGATACCAATTCAACGTTGAGTACCCAACCG 1542
|||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 1432 TTCTTGTCGGTGGAAGCAACACCAACGACGGTTACCAATACAACGTTGAGTACCCAACCG 1491
Query 1543 AACTCCGCATCGAGAAATTCTCACCACCTTACCTTGATCCAGCTCTAGCCAATATGAGAC 1602
| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1492 AGCTCCGTATCGAGAAATTCTCACCACCTTATCTTGATCCAGCTCTTGCCAATATGAGAC 1551
Query 1603 CAAGAATCGTAAACACCGCAACACCAAAACAGATTAAGTATGGACAAATGTTTGACGTAA 1662
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CAAGAATCGTAAACACCGCGACACCAAAACAGATTAAGTATGGACAAATGTTTGACGTAA 1611
Query 1663 AGATCGAGCTTAAACAACAAAACGTAGCAAAGGAGAATGTAATGGTGACAATGTTGGCAC 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AGATCGAGCTTAAACAACAAAACGTAGCAAAGGAGAATGTAATGGTGACAATGTTGGCAC 1671
Query 1723 CATCATTTACTACACATAGTGTATCAATGAACATGAGGTTGCTTATGTTGGGTATTAACA 1782
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1672 CATCATTTACTACACATAGTGTGTCGATGAACATGAGGTTGCTTATGTTGGGTATTAACA 1731
Query 1783 ATGTGAAGAATGTTGGTGGCGATAATCATCAAATCCAAGCCGTTGCTCCTCCTAGTGGAA 1842
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1732 ATGTCAAGAATGTTGGTGGCGATAATCATCAAATTCAAGCAGTTGCTCCTCCTAGTGGAA 1791
Query 1843 AACTTGCTCCTCCTGGTTATTATCTTCTCTTTGCCGTCTACAATGGTGTCCCTAGCGTTG 1902
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 AAGTTGCTCCTCCTGGTTATTATCTTCTCTTTGCCGTCTACAATGGTGTCCCTAGCGTTG 1851
Query 1903 GAGAATGGATTCAGATTGTCTAATTTTGATATGCATATAT-TATCAATT-TATTTTTTGA 1960
|||||||||||||||| || |||||||||||||||||||| ||| | | ||||||| ||
Sbjct 1852 GAGAATGGATTCAGATCGTGTAATTTTGATATGCATATATATAT-AGTGATATTTTTGGA 1910
Query 1961 AACGAAACCTATATAACATGTTTGTAAGGTTAAttttttttCTTTATACTTACATGTATA 2020
||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||| |||
Sbjct 1911 AACGAAACCTATA-A-CATGTTTGTAAGGCCAATTTTTTT-CTTTATACTTGTATGAATA 1967
Query 2021 TATTCTTTGATT 2032
||||||||||||
Sbjct 1968 TATTCTTTGATT 1979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5