BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67300.2
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475826 jgi|Araly1|475826|fgenesh2_kg.2__956__AT1G67300.1 2562 0.0
> Ahg475826 jgi|Araly1|475826|fgenesh2_kg.2__956__AT1G67300.1
Length=1776
Score = 2562 bits (1387), Expect = 0.0
Identities = 1525/1591 (96%), Gaps = 11/1591 (1%)
Strand=Plus/Plus
Query 135 TGAAATCAAGCGATCTAGAAGAATCTGGCAAAATCTTAGCTGACGAATGTTGGGATTGCA 194
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 158 TGAAATCAAGCGATCTAGAAGAATCTGGCAAAATCTTAGGTGACGAATGTTGGGACTGCA 217
Query 195 ACGAGAAACATCCTCGATGTATAAGAGAACGTCATCGAGAGATTATTCTCCGATGATCGA 254
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 218 ACGAGAAACATCCTCGATGTACAAGAGAACGTCATCGAGAGATTATTCTCCGATGGTCGA 277
Query 255 CGTCGAAGACAGCTCAGG---TCTTTTAGAGAATGATGTGGACAATGAAATGGAAACTAC 311
||||||||| |||||||| ||||||||||||||| ||| | || |||||||| |||||
Sbjct 278 CGTCGAAGATAGCTCAGGTCTTCTTTTAGAGAATGAAGTGAATAAGGAAATGGAGACTAC 337
Query 312 AAATCCTTCATGGAAGTGTTCTCTTCCGCATGTTCTAGTGGCTACAATTTCGTCGTTTCT 371
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 338 AAATCCTTCATGGAAGTGTTCTCTTCCACATGTTCTAGTGGCTACGATTTCGTCGTTTCT 397
Query 372 ATTTGGTTACCATTTAGGAGTTGTTAATGAACCTCTTGAAAGCATTTCGTCTGATCTTGG 431
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 398 ATTCGGTTACCATTTAGGAGTTGTTAATGAACCACTTGAAAGCATTTCGTCTGATCTTGG 457
Query 432 TTTTAGTGGTGATACATTAGCTGAAGGTTTGGTGGTTAGTGTATGTCTTGGTGGTGCATT 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 458 TTTTAGTGGTGATACATTAGCTGAAGGTTTGGTGGTTAGTGTATGTCTTGGTGGCGCCTT 517
Query 492 TCTCGGATCTTTATTCAGTGGGGGAGTTGCTGATGGGTTTGGAAGACGGAGAGCTTTTCA 551
| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 518 TATCGGATCTTTATTCAGTGGAGGAGTTGCTGATGGGTTTGGAAGGCGGAGAGCTTTTCA 577
Query 552 GATTTGTGCTTTGCCTATGATTTTGGGTGCTTTTGTGAGTGGAGTTAGCAACAGCTTAGC 611
| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 578 GCTTTGTGCTTTGCCTATGATTTTGGGTGCTTTTGTCAGTGGACTTAGCAACAGTTTAGC 637
Query 612 TGTAATGCTTTTGGGAAGATTCTTGGTTGGGACTGGCATGGGTCTTGGACCACCTGTGGC 671
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 638 TGTCATGCTTTTGGGAAGATTCTTGGTTGGGACTGGCATGGGTCTTGGGCCACCTGTGGC 697
Query 672 AGCACTCTATGTGACAGAGGTATCACCAGCTTTTGTTAGGGGAACATATGGAAGCTTCAT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AGCACTCTATGTGACAGAGGTATCACCAGCTTTTGTTAGGGGAACATATGGAAGCTTCAT 757
Query 732 ACAGATAGCTACATGTCTGGGACTGATGGCAGCTCTGTTTATAGGGATCCCAGTCCATAA 791
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 758 ACAGATAGCTACATGTCTGGGACTGATGGCAGCCCTGTTTATAGGGATCCCAGTCCATAA 817
Query 792 CATCACGGGTTGGTGGCGTGTCTGTTTCTGGCTTTCAACGATACCTGCTGCACTACTCGC 851
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 818 CATCACTGGTTGGTGGCGTGTGTGTTTCTGGCTATCAACGATACCTGCTGCACTACTCGC 877
Query 852 TCTGGGAATGTTCCTCTGTGCTGAGTCTCCACAGTGGCTATTCAAGCAAGGGAAGATAGC 911
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TCTGGGAATGTTCCTATGTGCTGAGTCTCCACAGTGGCTATTCAAGCAAGGGAAGATAGC 937
Query 912 TGAAGCAGAAGCTGAGTTTGAGAGGCTGCTTGGAGGGTCTCATGTGAAAACAGCAATGGC 971
|||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 938 TGAAGCAGAAGCCGAGTTTGAGAGGCTGCTCGGAGAGTCTCATGTGAAAACAGCAATGGC 997
Query 972 AGAATTATACAAACTAGATCTAGACAAGACGGATGAACCAGATGTTGTGAGCCTCTCTGA 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 998 AGAATTATACAAACTAGATCTAGACAAGACGGATGAACCAGATGTTGTGAGCCTCTCGGA 1057
Query 1032 GCTGTTATATGGTCGGCATTCAAGAGTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCA 1091
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ACTGTTATATGGTCGGCATTCAAGAGTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCA 1117
Query 1092 ACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTATTCAAAAGTGCTGG 1151
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1118 ACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTTTTCAAAAGTGCCGG 1177
Query 1152 AGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGGATCTGTAAT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGGATCTGTAAT 1237
Query 1212 CGCGATGGTGTTGATGGATAAAGTAGGAAGAAAGCTTCTTCTGCTTTGGAGTTTTATTGG 1271
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1238 CGCGATGGTGTTGATGGATAAAGTAGGAAGAAAGCTTCTTCTCCTTTGGAGTTTTATTGG 1297
Query 1272 CATGGTATGTTCAGCAATGGCACTTCAAGTTGGTGCTACAAGTTCATACTTACCACATTT 1331
||||| | || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1298 CATGGCA-GT--AGCAATGGCACTTCAAGTTGGTGCAACAAGTTCATACTTACCACATTT 1354
Query 1332 TTCGGCGTTGTGTTTGTCTGTCGGTGGCACTCTTGTGTTTGTGCTAACATTCGCCTTAGG 1391
||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1355 TTCGGCGTTGTGTTTATCTGTCGGTGGCACTCTCGCGTTTGTGCTAACATTCGCCTTAGG 1414
Query 1392 AGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAGATCTTCCCAAGTCGAATCAGAGCAAA 1451
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1415 AGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAAATCTTCCCAAGTCGAATTAGAGCAAA 1474
Query 1452 AGCGATGGCTTTCTGCATGTCTGTGCATTGGGTGATAAATTTCTTTGTGGGTTTACTCTT 1511
||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1475 AGCTATGGCTTTTTGCATGTCGGTGCATTGGGTGATAAACTTCTTTGTGGGTTTACTCTT 1534
Query 1512 TCTGAGATTGCTTGAGAAGCTTGGTCCTCGGCTACTATATTCGATGTTTTCTACGTTCTG 1571
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 TCTGAGATTGCTTGAGCAGCTTGGTCCTCGGCTACTATATTCGATGTTTTCTACGTTCTG 1594
Query 1572 TTTAATGGCGGTGATGTTCGTGAAGCGGAACGTGATTGAAACCAAAGGAAAAACACTTCA 1631
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1595 TTTAATGGCGGTGATGTTCGTGAAGCGGAACGTGATTGAAACCAAAGGCAAAACACTTCA 1654
Query 1632 AGAGATTGAGATTTCTCTACTAGCCAAACCATGAATGTGTTTTCAGTCTCTC---AT--C 1686
|||||||||||| ||||||||||||||||||||||||||| |||| |||||| || |
Sbjct 1655 AGAGATTGAGATCTCTCTACTAGCCAAACCATGAATGTGTATTCATTCTCTCTCTATGTC 1714
Query 1687 TTGTTGGTCACTGTTGTATAATCAAATAAAA 1717
|||| ||||||||||||||||||||||||||
Sbjct 1715 TTGTCGGTCACTGTTGTATAATCAAATAAAA 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5