BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67325.2
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315746 jgi|Araly1|315746|fgenesh1_pm.C_scaffold_2000779 1227 0.0
> Ahg315746 jgi|Araly1|315746|fgenesh1_pm.C_scaffold_2000779
Length=2184
Score = 1227 bits (664), Expect = 0.0
Identities = 718/744 (97%), Gaps = 4/744 (1%)
Strand=Plus/Plus
Query 566 ATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAGTCTGCTCCCAAACCT 625
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAATCTGCTCCCAAACCT 60
Query 626 ATGCAA-CATCAACAAGGTTTCTCATCACCCGGGGCATACTTAGGATCTGGGGGTCCCCC 684
|||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 61 ATGCAACCA-CAACAAGGTTTCTCATCACCCGGGCCATATTTAGGATCTGGGGGTCCCCC 119
Query 685 TCCAGTATATATGGGCGGGTCACCATATGGATCTCCTCTCTTTAATGGATCGTCTATGCC 744
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 120 TCCAGTATATATGGGCGGGTCACCATATGGATCTTCTCTCTTTAATGGGTCGTCTATGCC 179
Query 745 TCCTTATGACGTCCCATTTTCTGGGGGTTCGCCTTACCATTTTAACTATAATAGCCGAAT 804
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TCCTTATGACGTCCCATTTTCTGGGGGTTCACCTTACCATTTTAACTATAATAGCCGAAT 239
Query 805 GCCTGCCGGAGCTCATTACAGACCATTACATATGTCTGGACCACCACCATACCATGGCGG 864
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTTCCGGAGCTCATTACAGACCACTACATATGTCTGGACCACCACCATACCATGGCGG 299
Query 865 ATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCT 359
Query 925 TGGTATGGCAATGGGTCCTGGTTCTGCCGCTGCCATGATGCCAAGACCAAGGTTTTACCC 984
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 360 TGGTATGGCAATGGGTCCTGGTGCTGCCGCTGCCATGATGCCTAGACCAAGGTTTTACCC 419
Query 985 AGATGAAAAATCACAAAAGAGAGATTCAACTCGCGATAATGATTGGACATGTCCGAATTG 1044
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AGATGAAAAATCACAAAAGAGAGATTCAACTCGTGATAATGATTGGACATGTCCGAATTG 479
Query 1045 TGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAA 1104
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 TGGTAATGTAAACTTTTCATTCAGAATTGTATGTAACATGAGGAAGTGCAACACTCCAAA 539
Query 1105 GCCTGGTTCTCAGCAGGGTGGAAGCTCAGATAAAATATCCAAACAAAATGCACCGGAAGG 1164
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GCCTGGTTCCCAGCAGGGTGGAAGCTCAGATAAAATATCAAAACAAAATGCACCGGAAGG 599
Query 1165 GAGCTGGAAGTGTGATAACTGTGGAAATATAAACTACCCATTCAGGAGCAAATGCAACAG 1224
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 GAGCTGGAAGTGTGATAATTGTGGAAATATAAACTATCCATTCAGGAGCAAATGCAACAG 659
Query 1225 GCAAAACTGTGGAGCTGATAAGCCTGGGGATCGGTCGAATGGATCTCCGTCCCGTGCACC 1284
||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||||
Sbjct 660 GCAAAACTGTGGAGCTGATAAACCAGGGGATCAGTCGAATGGATCTCCTTCCCGTGCACC 719
Query 1285 AGAAGAGAACGATCAG--TGAGTC 1306
|||||||||||||||| ||||||
Sbjct 720 AGAAGAGAACGATCAGGGTGAGTC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5