BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67350.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475833 jgi|Araly1|475833|fgenesh2_kg.2__963__AT1G67350.1 861 0.0
> Ahg475833 jgi|Araly1|475833|fgenesh2_kg.2__963__AT1G67350.1
Length=617
Score = 861 bits (466), Expect = 0.0
Identities = 578/629 (92%), Gaps = 20/629 (3%)
Strand=Plus/Plus
Query 182 CACTCGCTCTGCGCTGCGTTCGAATCCAGAACTCTCTGACCATCCCAAAGCAAAAGCTTC 241
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CACTCGCTCTGCGCTGCGTTC-AAT-CAGAACTCTCTGACCATCCCAAAGCAAAAGCTTC 58
Query 242 ACCGATCTTCCTCGTTTGGTCTCGAATATTAA-GTGAAATATGGGTTTCATAATGGAATT 300
| |||||||| |||| |||| ||||| |||| || | ||||||||||||||||||||||
Sbjct 59 AGCGATCTTCATCGTCTGGTTTCGAACCTTAAGGT-ATATATGGGTTTCATAATGGAATT 117
Query 301 CGCGGAGAATTTGGTGTTAAGGTTAATGGAGAATCCAGAGGA-ACGAGACAGGAAAGCGA 359
|||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 118 TGCGGAGAACTTGGTGCTAAGGTTAATGGAGAATCCAGAGGAGA-GAGACAGGAAAGCGA 176
Query 360 GGGAACACATATATGAGATGCATGAGAGGTGCAAGAAGATTAAGGAGATGTGGGCATTGC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 GGGAACACATATATGAGATGCATGAGAGGTGCAAGAAGATTAAGGAGATGTGGGCATTAC 236
Query 420 CTATTCGTCCTTATGGATTCTGGACATTTGAGCGTCACAATGCTCAGCTTCGTTGGGATC 479
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 237 CTATTCGTCCTTATGGATTTTGGACTTTTGAGCGGCACAATGCTCAGCTTCGTTGGGATC 296
Query 480 CTCAGATCAGTCAGGTTGCTGGTCGAAGGGATCCTTATGATGATCTTCTCGAGGACAACT 539
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 297 CTCAGATCAGTCAGGTCGCTGGTCGAAGGGATCCTTATGATGATCTTCTTGAGGACAACT 356
Query 540 ACACTCCTCCTTCTTCCTCTTCCTCATCTTCAGACTAATCAAACAATGAAAGAAGATGTG 599
||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||
Sbjct 357 ACACTCCTCCTTCTTCCTC------ATCTTCAAACTAATCAACCAATGAAGGAAGATGT- 409
Query 600 T-TATGCTGTCTGGATGGATGCATGTTTGTTTTCAAGCTATTTTTCTCGGAGTTTGT-C- 656
| |||||||||||||||||||||||| ||||||||||| |||||||||||| || || |
Sbjct 410 TCTATGCTGTCTGGATGGATGCATGTCTGTTTTCAAGCAATTTTTCTCGGAATT-GTACT 468
Query 657 CGCTTCTGTTTCTATTTGTTCTTAAGGTGTCTGGGAGCTTGGTA-CAAAACTCAAATAAT 715
| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 469 CTCTTCTGTTTCTATTTGTTCTTAAGGTGTCTGGGAGCTTGGTATCAAGACTCAAATAAT 528
Query 716 AACTTCAAACTTGTTT--ACGAACGAGAAAGAAATAATGCTCATTGGTTCTTAGTAAAGT 773
|||| || |||| ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 529 AACTCCACACTTTTTTTTATGAACGAGAAAGAAATAATGCTCATTGGTTATTAGTAAAGT 588
Query 774 TGTTTTGATTCTCCATCTCCTCCATTTTT 802
||||||||||| ||||||||||||| |||
Sbjct 589 TGTTTTGATTCCCCATCTCCTCCATCTTT 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5