BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67360.2
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475836 jgi|Araly1|475836|fgenesh2_kg.2__966__AT1G67360.2 1489 0.0
> Ahg475836 jgi|Araly1|475836|fgenesh2_kg.2__966__AT1G67360.2
Length=1078
Score = 1489 bits (806), Expect = 0.0
Identities = 999/1087 (92%), Gaps = 34/1087 (3%)
Strand=Plus/Plus
Query 8 AAACGATTCtttttttAAT-ACCCCAC-ACACCCTCAGATCT-ATTATCAACCGTTGGAT 64
|||||||||||||||| || |||||| |||||||||||||| || | ||||||||||||
Sbjct 1 AAACGATTCTTTTTTTGATGCCCCCACAACACCCTCAGATCTAATCA-CAACCGTTGGAT 59
Query 65 TACGTGGACAAGTCCAATGCCACTCGTATTTTTAACCATTCCTCACACTCCTCAACGTGA 124
||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 60 CGCGTCGACAAGTCCAATTCCACTCGTATTTTTAACCACTCCT--CACTCCTCAACGTGA 117
Query 125 TGTGAAGATACTTTGCTGTTTCATAACGTCATAAAGAACAGTGACAGGCGAAATTTCTCA 184
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 118 TGTGAAGATACTTTGCTGTTTCACAACGTCATAAAGAACAGTGACAGGCGCGATTTCTTA 177
Query 185 AGAAAGCAAATCGGAAGAACTCACaaaaaaaaCTAAGATGGAGACAGAGAAGAAAAATAG 244
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 178 AGAAAGCAAATC-GAAGAACTCAAAAAAAAAACTAAGATGGAAACAGAGAAGAAAAATAG 236
Query 245 CAAGGAGGTAGCGCTAAAACACCTAGCGTTCGTGAGAATTGCAACGATCCATATTCTGGC 304
||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 237 CAAGGAGGTAGGGCTAAAACACCTAGGGTTCGTGAGAATTGCAGCGATCCAGATTCTGGC 296
Query 305 TTCCGTCTCAAATCTCTACGAATACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGT 364
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCCGTCTCAAATCTGTACGACTACGCTAAACAAAACTCCGGTCCTCTCAAATCCGCCGT 356
Query 365 GGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGAAAAGGTCGAAGGAGCCGTCACCACCGTCGTCACCCCTGTCTATCAGAAATTCAAAGA 416
Query 425 TGTTCCTGATTCTCTCCTGGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTACAAGTT 484
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 TGTTCCAGATTCTCTCCTCGTCTTTCTAGATCACAAGGTGGGTGAAGTTTCGTATAAGTT 476
Query 485 TGATGAGCATGCTCCTCCAATGGCTAAGA-AAGTGGTGAATCAAGCACATGTATTGATCT 543
||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||
Sbjct 477 TGATGAGCATGCTCCTCCAATGGCTAA-ACAAGTGGTGAATCAAGCTCATGTGTTGATCT 535
Query 544 ACAAGGCGACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAG 603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACAAGGCAACAGAGAAAGCTCAAAGCTTTGTGAAAGAGGCTCGTACCGGTGGTCCCAAAG 595
Query 604 CTGCGTTTAACTATGCTGCAACTGAGTACAAGTTTTTCGTTGTGACCAACTCGGTTAAAG 663
|||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 CTGCTTTTAGCTATGCTGCGACTGAGTACAAGTATTTCGTTGTGACCAACTCGGTTAAAG 655
Query 664 TCTGGGCTAAACTTAACCAGTATAAACCAATCCATGCAATGGGTGACAAAGCTTTGCCTG 723
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 656 TCTGGGCTAAACTTGACCAGTACAAACCAATCCATGCAGTGGGTGACAAAGCTTTGCCCG 715
Query 724 TGGCTGCACACTTTTCCAGTCGGTACAACGATTTGGTGACTGATATGACTAATATGGGTT 783
||||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 716 TGGCTGCACACTTGTCTAGTCGGTACAACGATTTGGTGACGGATATGACTCAGATGGGTT 775
Query 784 ACTCTTTGGTTGGTTATCTTCCGTTGGTTCCTGTTGATGACATTGTTAAGGCTTATGA-A 842
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 776 ATTCTTTGGTTGGTTATCTTCCATTGGTTCCTGTTGATGACATTGTTAAGGCTTATGAGA 835
Query 843 AAGGAAGATGCAAGGA-GAAAGAAAGGAGGGGA-T-A-------CGGCT------G--G- 883
||| |||||||| | | ||||||||||||| || | | ||||| | |
Sbjct 836 AAG-AAGATGCA-GCACGAAAGAAAGGAGGAGAATCAGAAGAGACGGCTACTACTGATGG 893
Query 884 AAAGAAAGGAGAGACTACTGATGCGGCTGATGGTGA-TAAATCATCGTCTGATTCGGAGT 942
|||||||||||||||| ||||| | ||||||| || |||||| |||||||||| |||||
Sbjct 894 AAAGAAAGGAGAGACTGCTGATACTACTGATGG-GAATAAATCGTCGTCTGATTTGGAGT 952
Query 943 AGGATTGAGACATTTTGTGATTTGTTGCTGCTTTGGAAAGTTTGGTTTGTTGGGTTTTGG 1002
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 953 AGGATTGAGACATTTTGTGATTTGTTGTTGCTTTGGAAAGTTTGGCTTGTTGGGTTT-GG 1011
Query 1003 TTATGTGTGTAAATGATCTTAGGACCTCTCtttttttCTTCTATCACAGAACTTTGAACT 1062
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1012 TTATGTGTGTAAATGATCTTAGGAACTCTCCTTTTTTCTTCTATCACAAAACTTTGAACT 1071
Query 1063 AGTGTTT 1069
|||||||
Sbjct 1072 AGTGTTT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5