BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67370.1
Length=2145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925985 jgi|Araly1|925985|scaffold_201546.1 2926 0.0
Ahg337099 jgi|Araly1|337099|fgenesh1_pg.C_scaffold_1003664 534 8e-151
Ahg353606 jgi|Araly1|353606|fgenesh1_pg.C_scaffold_7000779 283 3e-75
> Ahg925985 jgi|Araly1|925985|scaffold_201546.1
Length=1834
Score = 2926 bits (1584), Expect = 0.0
Identities = 1740/1816 (96%), Gaps = 8/1816 (0%)
Strand=Plus/Plus
Query 127 GGTGATGGCTCAGAAGCTGAAGGAAGCAGAGATCACTGAGCAGGACTCGCTTCTTCTGAC 186
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 20 GGTGATGGCTCAGAAGCTGAAGGAAGCAGAGATTACTGAGCAGGACTCGCTTCTTCTGAC 79
Query 187 TAGAAATTTGCTTCGTATTGCTATCTTCAACATAAGTTACATCAGAGGACTCTTTCCTGA 246
||| |||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct 80 TAGGAATTTGCTTCGTATTGCTATATTCAACATCAGCTATATCAGAGGACTCTTTCCTGA 139
Query 247 GAAGTATTTCAACGATAAATCGGTTCCTGCTTTAGATATGAAGATTAAGAAGCTAATGCC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GAAGTATTTCAACGATAAATCGGTTCCTGCTTTAGATATGAAGATTAAGAAGCTAATGCC 199
Query 307 TATGGACGCTGAATCTCGCCGATTAATTGATTGGATGGAGAAAGGAGTCTACGATGCGCT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TATGGACGCTGAATCTCGCCGATTAATTGATTGGATGGAGAAAGGAGTCTACGATGCGCT 259
Query 367 TCAGAGGAAATATTTGAAGACGCTCATGTTCAGCATATGTGAAACTGTTGATGGTCCGAT 426
||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 260 TCAGAGGAAATATTTAAAGACGCTCATGTTCTGCATATGTGAAACAGTAGATGGTCCGAT 319
Query 427 GATTGAGGAATACTCATTTTCTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCATGAT 486
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GATTGAGGAATACGCATTTTCTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCATGAT 379
Query 487 GAATATCAATCGTACTGGAAATAAGAAAAATGGAGGAATATTTAACTCCACTGCTGACAT 546
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 380 GAATATCAATCGTACTGGAAATAAGAAAAATGGAGGAACATTTAACTCCACTGCTGACAT 439
Query 547 TACCCCAAATCAAATGAGGAGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAGCTGAT 606
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 440 TACTCCAAATCAAATGAGGAGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAACTGAT 499
Query 607 GAGGACTCTTGACAAAATGCCAGATGAGCGCACCATAGTGATGAAGCTTCTGTACTACGA 666
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 500 GAGGACTCTTGACAAAATGCCAGATGAGCGCACCATAGTGATGAAGCTTTTGTACTACGA 559
Query 667 TGATGTGACGCCACCAGATTACGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGC 726
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGATGTGACGCCACCAGATTATGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGC 619
Query 727 TCAGTATGTATGGACAAAGAATCCTCTGAGAATGGAAATTGGGAATGTTAACAGCAAACA 786
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 620 TCAGTATGTATGGACAAAGAATCCTCTGAGGATGGAAATTGGGAATGTTAACAGCAAACA 679
Query 787 TCTCGTGTTAACGCTAAAGGTCAAGAGCGTGCTTGATCCTTGTGAAGATGAAAATGACGA 846
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 680 TCTCGTGTTAACGCTAAAGGTCAAGAGCGTGCTTGATCCTTGTGAGGATGAAAATGACGA 739
Query 847 CATGCAAGATGATGGTAAGAGTATAGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 906
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 740 CATGCAAGATGATGGGAAGAGTATTGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 799
Query 907 TTCAGATAGCGAGATCAGTCAAACACAAGAAAATCAATTCATTGTGGCGCCAGTAGAGAA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TTCAGATAGCGAGATCAGTCAAACACAAGAAAATCAATTCATTGTGGCGCCAGTAGAGAA 859
Query 967 ACAAGATGACGATGATGGAGAGGTTGATGAAGATGACAACACACAGGATCCGGCTGAGAA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 860 ACAAGATGACGATGATGGAGAGGTTGATGAAGATGACAACACACAGGATCCGGTTGAGAA 919
Query 1027 TGAACAGCAGTTAGCAAGGGTGAAGGACTGGATCAACTCCCGTCACCTTGATACTCTGGA 1086
||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||
Sbjct 920 TGAACAGCAGTTAGCAAGGGTAAAGGACTGGATCAACTCCCATCACCTCGATACCCTGGA 979
Query 1087 GCTCACAGATATTCTTGCAAACTTCCCAGATATCTCAATAGTTCTATCTGAAGAAATCAT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 GCTCACAGATATTCTTGCAAACTTCCCAGATATCTCAATAGTTCTATCTGAAGAAATCAT 1039
Query 1147 GGATCAGCTCGTGACAGAAGGTGTTCTTTCGAAAACGGGGAAGGACATGTACATTAAAAA 1206
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1040 GGATCAGCTCGTGACAGAAGGTGTTCTTTCGAAAACGGGCAAGGACACGTACATTAAAAA 1099
Query 1207 GAGAGACAAGACACCAGAGAGCGAATTCACCTTTGTGAAAGAGGAAGCCGATGGTCAAAT 1266
|||||||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||
Sbjct 1100 GAGAGACAAGACACCAGAGAGCGAGTTCACTTTTGTGAAAGATGAAGCTGATGTTCAAAC 1159
Query 1267 T-TCTCCA--GG--G--AAATCTGTTGCTCCTGAAGACTACTTGTACATGAAAGCTCTTT 1319
| | |||| || | ||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 1160 TGT-TCCAAAGGATGGGAAACCTGTAGCTCCTGAAGACTACTTGTACATGAAAGCTCTAT 1218
Query 1320 ACCATTCTCTTCCGATGAAATATGTGACAATTACAAAGCTTCACAACATGCTGGATGGTG 1379
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1219 ACCATTCTCTTCCGATGAAATATGTGACGATTACAAAGCTTCACAACATGCTGGATGGTG 1278
Query 1380 AAGCCAATCAGACTGCAGTTCGTAAATTAATGGACAGGATGACCCAAGAGGGCTACGTGG 1439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AGGCCAATCAGACTGCAGTTCGTAAATTAATGGACAGGATGACCCAAGAGGGCTACGTGG 1338
Query 1440 AAGCTTCGAGCAACCGCAGGCTAGGGAAGCGTGTGATTCATTCTAGTCTAACTGAGAAGA 1499
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1339 AAGCTTCGAGCAACCGCAGGCTAGGAAAGCGTGTGATTCATTCTAGTCTAACTGAGAGGA 1398
Query 1500 AGCTAAATGAAGTCAGAAAGGTTCTTGCCACCGATGATATGGATGTGGATGTTACCGAAA 1559
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1399 AGCTAAATGAAGTCAGAAAGGTTCTTGCCACAGATGATATGGATGTGGATGTTAACGAAG 1458
Query 1560 CTATTAACAAGACAAACGGCCCAGATGCCAAAGTAACCGCAGATGTATCTACCTGTGGAG 1619
|| ||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 1459 CTGCTAACAAGACCAACGGCCTAGAGGGCAAAGTAACCGCAGACGTATCTACCTGTGGAG 1518
Query 1620 GTATCCACTCCATAGGTTCAGACTTCACACGCACGAAAGGAAGATCTGGTGGGATGCAGC 1679
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1519 GCATCCACTCCATAGGATCAGACTTCACACGTACGAAAGGAAGATCTGGTGGGATGCAGC 1578
Query 1680 AGAACGGCTCTGTTCTAAGTGAACAGACTATCTCTAAAGCTGGGAACACTCCCATTAGCA 1739
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1579 AGAACGGCTCTGTTCTAAGTGAACAGACCATCTCTAAAGCTGGGAACACTCCCATTAGCA 1638
Query 1740 ACAAGGCACAGCCTGCGGCTTCGAGGGAGAGCTTTGCGGTACATGGTGGAGCTGTTAAGG 1799
||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct 1639 ACAAGGCACAGCCTGCGGCTTCGAGGGAGAGCTTTGCGGTAAATGGAGGGGCTGCTAAGG 1698
Query 1800 AAGCCGAGACAGTCAACTGTAGCCAAGCCTCACAGGACAGACGTGGCAGGAAAACCAGCA 1859
| | |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1699 AGGTCGAGACGGTCAATTGTAGCCAAGCCTCACAGGACAGACGTTGCAGGAAAACCAGCA 1758
Query 1860 TGGTGAGGGAGCCTATTCTGCAGTACTCCAAGCGTCAGAAATCTCAAGCTAATTGAAGAC 1919
||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1759 TGGTGAGAGAGCCAATTCTGCAGTACTCTAAGCGTCAGAAATCTCAGGCTAATTGAAGAT 1818
Query 1920 ACCACCTCTATCAGAC 1935
||||||||||||||||
Sbjct 1819 ACCACCTCTATCAGAC 1834
> Ahg337099 jgi|Araly1|337099|fgenesh1_pg.C_scaffold_1003664
Length=3492
Score = 534 bits (289), Expect = 8e-151
Identities = 532/642 (83%), Gaps = 45/642 (7%)
Strand=Plus/Plus
Query 274 TGCTTTAGATATGAAGATTAAGAAGCTAATGCCTA-TGGACGCTGAATCTCGCCGATTAA 332
|||||||||||||||||| |||| ||||| | | | | ||| ||||| | || |||||||
Sbjct 216 TGCTTTAGATATGAAGATCAAGACGCTAA-GGCAAGTCGACACTGAACCACGGCGATTAA 274
Query 333 -T---T-G-ATTGGATGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATATTTGAAGA 386
| | | |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 275 TTGACTGGAATTGGATGGAGAAAGGAGTCAACGATGCGCTGCAGAGGAAATATTTGAAGA 334
Query 387 CGCTCATGTTCAGCATATGTGAAACTGTTGATGGTCCGATGATTGAGGAATACTCATTTT 446
|||| | ||| || || | | | ||||||||||||||||||||||||||||||||
Sbjct 335 CGCTTGTCTTCTGC--AT-T----C-G-TGATGGTCCGATGATTGAGGAATACTCATTTT 385
Query 447 CTTTCAGCTATTCAGATTCTGACAGCCAAGATGTCA-TGATGAATATCAATCGTACTGGA 505
||||||||||||||||||||| ||||||| |||||| | |||||| ||||||||| ||||
Sbjct 386 CTTTCAGCTATTCAGATTCTGGCAGCCAACATGTCACT-ATGAATGTCAATCGTAATGGA 444
Query 506 AATAAGAAAAATGGAGGAATATTTAACTCCACTGCTGACATTACCCCAAATCAAATGAGG 565
||||||||| ||| ||||| | || | | | || | |||| |||
Sbjct 445 AATAAGAAACATGAAGGAA-------C-CC-C--C--A-AT--C---AAAT-----GAGT 480
Query 566 AGTTCAGCTTGCAAAATGGTTCGTACACTAGTTCAGCTGATGAGGACTCTTGACAAAATG 625
| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||| |
Sbjct 481 ACTTCAGCTTGCAAAATGGTCCCTACACTAGTTCAGCTGTTGAGGACTCTTGACAAAACG 540
Query 626 CCAGATGAGCGCACCATAGTGATGAAGCTTCTGTACTACGATGATGTGACGCCACCAGAT 685
||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 541 CCAGACAAGCGCACCATTGTGATGAAGCTTCTTTACTACGATGATGTGATGCCACCAGAT 600
Query 686 TACGAGCCACCTTTCTTCAGAGGCTGTACAGAAGACGAAGCTCAGTATGTATGGACAAAG 745
|| |||||||||||||||||| |||| |||||||| ||| || | |||||||||||||||
Sbjct 601 TATGAGCCACCTTTCTTCAGAAGCTGCACAGAAGAAGAATCTAATTATGTATGGACAAAG 660
Query 746 AATCCTCTGAGAATGGAAATTGGGAATGTTAACAGCAAACATCTCGTGTTAACGCTAAAG 805
||||| ||| ||||||| |||||| | || | || ||||||||||||||| | ||| |
Sbjct 661 GATCCTATGATAATGGAAGTTGGGATTATTTATAGGAAACATCTCGTGTTAGCTTTAACG 720
Query 806 GTCAAGAGCGTGCTTGATCCTTGTGAAGATGAAAATGACGACATGCAAGATG-ATGGTAA 864
||||||||| |||||||||| | ||| ||||||||||| ||||||||||| | |||| ||
Sbjct 721 GTCAAGAGCTTGCTTGATCCCTCTGAGGATGAAAATGATGACATGCAAGA-GCATGGGAA 779
Query 865 GAGTATAGGACCTGATTCTGTACATGATGACCAGCCTTCTGA 906
||| | | |||||||| ||||||||| |||||||||||||
Sbjct 780 GAGCACAAAACCTGATTGTGTACATGACAACCAGCCTTCTGA 821
> Ahg353606 jgi|Araly1|353606|fgenesh1_pg.C_scaffold_7000779
Length=381
Score = 283 bits (153), Expect = 3e-75
Identities = 247/291 (85%), Gaps = 11/291 (4%)
Strand=Plus/Plus
Query 160 CACTGAGCAGG-A-C-TCGCTTC-TTCTGACTA-GAAATTTGCTTCGTATTGCTATCTTC 214
||| ||||||| | | |||| || || |||||| | || ||||| |||| ||| ||||||
Sbjct 12 CACCGAGCAGGAATCTTCGC-TCGTTTTGACTAGGGAA-TTGCTCCGTACTGCCATCTTC 69
Query 215 AACATAAGTTACATCAGAGGACTCTTTCCTGAGAAGTATTTCA-ACGATAAATCGGTTCC 273
||||| |||||||||||||| |||||||| | ||||||||||| | ||| |||||||||
Sbjct 70 AACATCAGTTACATCAGAGGCCTCTTTCCCGTGAAGTATTTCAGA-AATATATCGGTTCC 128
Query 274 TGCTTTAGATATGAAGATTAAGAAGCTAATGCCTATGGACGCTGAATCTCGCCGATTAAT 333
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 129 TGCTTTAGATATGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGAT 188
Query 334 TGATTGGATGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATATTTGAAGACGCTCAT 393
|| ||| |||||||| ||||||||||||| || |||| |||| | ||||||| || ||
Sbjct 189 TGGCTGGGTGGAGAAAAGAGTCTACGATGCCCTGCAGAAGAAACACCTGAAGACACTTAT 248
Query 394 GTTC-AGCATATGTGAAACTGTTGATGGTCCGATGATTGAGGAATACTCAT 443
|||| | ||| |||||||| || || ||||||||| ||||||||||| |||
Sbjct 249 GTTCTA-CATCTGTGAAACAGTAGAGGGTCCGATGGTTGAGGAATACACAT 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80713229155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5