BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67390.1 Length=1440 Score E Sequences producing significant alignments: (Bits) Value Ahg908287 jgi|Araly1|908287|Al_scaffold_0002_1368 1507 0.0 Ahg908288 jgi|Araly1|908288|Al_scaffold_0002_1369 758 0.0 > Ahg908287 jgi|Araly1|908287|Al_scaffold_0002_1368 Length=1440 Score = 1507 bits (816), Expect = 0.0 Identities = 1253/1461 (86%), Gaps = 42/1461 (3%) Strand=Plus/Plus Query 1 ATGAGTCAATTCCCTCTCTCAATTCTCAAAACCTCTCAACCTCACCATCAGCCCAAATCC 60 ||||||| |||||||||||||||||| ||||||||||| ||||||||| | |||||| Sbjct 1 ATGAGTCTCTTCCCTCTCTCAATTCTCGGAACCTCTCAACTTCACCATCAACTCAAATCG 60 Query 61 ATGAACGCACCACGATCATCGGATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGA- 119 ||||||||||||| ||| |||||||||||||||||| |||||||||| ||| |||| Sbjct 61 ATGAACGCACCACTATCGTCGGATGCAAGAGGCAAAGGTATCCTCATTGAT----TCGAT 116 Query 120 CGACCGGATCAGTAAACTCCCCGACGATGTGTTGGTCATGATCCTAGCAAGTTTGTCCAC 179 |||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||| Sbjct 117 CGACCGAATCAGTAAACTCCCCGACGACGTGTTGGTCAAGATCCTAGCAAGTACGTCCAC 176 Query 180 TGAAGATGCTTTGAAGACAAGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 239 ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 177 AGAAGATGCTGTCAAGACAGGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 236 Query 240 GCCTTACCTCCACTTCGATTTGCTAAGTGCTACAT--A-CGAGAGTGGACTTATCGCTGC 296 ||||||||||||||| ||| |||||| |||||| | | | |||| |||| | | | | | Sbjct 237 GCCTTACCTCCACTTTGATATGCTAATTGCTACCTTGAACAAGAGGGGACCTCTGGATCC 296 Query 297 TCTTTCCAAT-AGTGTTGCGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATT 355 |||||| ||| | ||||||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 297 TCTTTCTAATCA-TGTTGCGAAATCGATAACCGAGGTTATAAAAAATCACAATGGTCATC 355 Query 356 TGATGGGTTGCTCAATCCATCATTTCGCACACCATTGTGTAA-ACGGTGTGCTTGAAAAT 414 ||||||||||||||||| |||||||||||||||| ||| || |||||| ||| |||| | Sbjct 356 TGATGGGTTGCTCAATCGATCATTTCGCACACCAGTGTC-AAGACGGTGAGCTCGAAACT 414 Query 415 TGGATTCGATTGCTTACTCTTGAGAAAAATACTAGATTTCTCTCACTTTGTAACAAAC-T 473 ||||||| ||| ||||||||| ||||| |||| | | |||||||||| |||| | | Sbjct 415 TGGATTCAATTACTTACTCTTCAGAAACATACCAAAGCCCTCTCACTTTTTAACCTTCAT 474 Query 474 -T----GGTAAAGGTAGGAGAACCAATGTGCTTCGGTTTTCCCCTAACACTTTCTCGCAT 528 | ||||| |||| |||| |||| || |||| || ||||| ||||| ||||| ||| Sbjct 475 GTTCATGGTAACGGTAAGAGACCCAACGTCCTTCAATTGTCCCCAAACACATTCTCCCAT 534 Query 529 CCAAAGC-TCGCAACCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCAA 587 |||| || || |||| |||||||||| | ||||| |||||| |||| ||||||||||||| Sbjct 535 CCAA-GCCTCTCAACACTCTTCCTACATGGATACAATTTAGAAACCCCACATGCCTTCAA 593 Query 588 GGAGTGTGAA-AATCTGAAGATTCTCAAGCTTGAGGGAATCTTAGCTGAAGTTGATGTGT 646 |||||| || ||||| ||||||||||| |||||| ||||||| ||||| |||||||||| Sbjct 594 CGAGTGT-AATAATCTCAAGATTCTCAAACTTGAGAGAATCTTTGCTGAGGTTGATGTGT 652 Query 647 TCAACACAGTTATTGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAATTGC-ATGTGG 705 ||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||| Sbjct 653 TCAACACAGTTATTGCATCGTGCCCTTCTCTCAAGGTGCTGGTGCTAAAT-GCCATGTGG 711 Query 706 TACAACGAAAAGACCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGAT 765 |||||||| ||| | ||| ||||||||||||| || || || |||||||||||||||||| Sbjct 712 TACAACGATAAGGCTTGCTTGAAGATTCATAACAACAACCTTAAGGTCTTGCATTTGGAT 771 Query 766 TGCCC-TCATGTTGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTTT 824 | || | |||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 772 T-CCTGTAATGTAGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCGTTTA 830 Query 825 CTACTTTGCGTTTGCTAAGGAACAA-AACTTTGTCATCAAGGCACCAAGACTTTTGTTTA 883 ||||| | ||||| || |||| | ||||| |||||||| ||||||||| ||||||||| Sbjct 831 CTACTATATGTTTGATA-GGAAGTATAACTTCGTCATCAATGCACCAAGAATTTTGTTTA 889 Query 884 ATAAT-TGGACTAAAGATCTAGAGAA-AGTGCCAAACATGAACTACAATATTACATCTCA 941 | || |||||| | || || ||| | ||||||| |||||||||||| ||||||||||| Sbjct 890 A-AAGCTGGACTCAGGA-CTCGAGGAGAGTGCCATTCATGAACTACAACATTACATCTCA 947 Query 942 TGCTCAGGAGaaaaaaaaTATTGGACATGAGTTCGTGGTGAGTGGAGATGCTAGCTACTT 1001 ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| || Sbjct 948 TGCTCAGGAGAAAGAAAATCTTGGACATGAGTTCGTGGTGAGTGGAGATGCTAACTATTT 1007 Query 1002 GCAAAAGCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACAT 1061 || |||| |||||||||||||||||| | ||||||| ||||||||||| || | || Sbjct 1008 TCAGCAGCTCAAGTCTTTGAAGGTGGTCATAGATGTAATGAATTCGAGAGAGGTTGAAAT 1067 Query 1062 GCTAAGGGACATTTTAGTTGCTTGGAATGGAGTATTGGAAGAGCTCCATATACTATTTAA 1121 | | ||||| |||||||| || ||| ||||| || ||||||||||| ||||| ||||||| Sbjct 1068 GTTGAGGGATATTTTAGTAGCGTGGCATGGAATAATGGAAGAGCTCGATATAATATTTAA 1127 Query 1122 GGATAACAATGTCCCTAACTCTAAGGAAGATAGTGAATCTTCGATTGGTGGAACACAAAA 1181 ||||||||||||| | || |||||||| |||||||||| || |||||||||||||| Sbjct 1128 GGATAACAATGTC--T--CT--AAGGAAGAGGGTGAATCTTCCATCGGTGGAACACAAAA 1181 Query 1182 GAAAAAGTGGGAGGAGGCAAATCTGTTTCCCAATGCTGATTTTCGT-GTGGAAGTTATGT 1240 |||||||||||||||| |||| || ||||||||||||||||| || ||||||||| ||| Sbjct 1182 GAAAAAGTGGGAGGAGACAAAACTTTTTCCCAATGCTGATTT-CGGCGTGGAAGTTTTGT 1240 Query 1241 GGATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTAA 1300 ||||| || |||||| ||| || ||||| ||||| ||||||||||||||||||||||||| Sbjct 1241 GGATGGTTAATTTCAGCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTAA 1300 Query 1301 CGCAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTC-ATTTTTTGCAAATGAG 1359 ||||||||| ||||||||||||||||||| || |||||||| |||||| ||||| ||| Sbjct 1301 TGCAAGGGACAATAATGAAGAAGATGATGATCAAGACGTCTTCGATTTTT-GCAAAGGAG 1359 Query 1360 AAGTTGGATAACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAAT 1419 ||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1360 AAGTTAGAGAACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAAT 1419 Query 1420 CTTAGTATTGAATGCTTCTGA 1440 ||||||||||||||||| ||| Sbjct 1420 CTTAGTATTGAATGCTTTTGA 1440 > Ahg908288 jgi|Araly1|908288|Al_scaffold_0002_1369 Length=1380 Score = 758 bits (410), Expect = 0.0 Identities = 1083/1399 (77%), Gaps = 82/1399 (6%) Strand=Plus/Plus Query 83 ATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGACGACCGGATCAGTAAACTCCCCG 142 |||||||||| | ||| ||||| |||||||| | ||||||||| ||| |||| || | Sbjct 23 ATGCAAGAGGTAGACGGATCCTTATCGATCC---GGTCGACCGGATTAGTCAACTACCGG 79 Query 143 ACGATGTGTTGGTCATGATCCT--AGCAAGTTTG-TCCACTGAAGATGCTTTGAAGACAA 199 || ||||||||||||||||||| | ||| || | || |||||||| | | ||||| Sbjct 80 ACAATGTGTTGGTCATGATCCTCAAACAA--ATGAT-AACAGAAGATGCCGTCAGGACAA 136 Query 200 GTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGTGCCTTACCTCCACTTCGATT 259 |||| ||||||| ||||||||||| ||||||||| ||||||||||| ||| ||||||| Sbjct 137 GTGTCTTGTCTAAACGATGGAAGAGTGTATGGAAGCAAGTGCCTTATCTCTTCTTCGATA 196 Query 260 TGCTAAGT--GC-TACATACGAGA-GTGG-ACTTAT-CGCTGCTCTTTCCAATAGTGTTG 313 ||| || | || | | || || | ||| || | | | || ||| ||| ||| |||||| Sbjct 197 TGC-AA-TACGCTTTCTTAAGAAACATGGAACCTCTGCCCT-CTCATTCTAATCGTGTTG 253 Query 314 CGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATTTGATGGGTTGCTCAATCC 373 | ||| |||||||||||||||||| |||||||||||| || || || | ||| ||||| Sbjct 254 CCAAATTGATAACCCAGGTTATAAAGAATCACAATGGTGATCTGGTGAGCTGCAGAATCC 313 Query 374 ATCA-T-TTCGCACACCATTGTGTAA-ACGGTGTGCTTGAAAATTGGATTCGATTGCTTA 430 | || | || ||||||| ||| || |||| | ||| |||| |||||||| ||| |||| Sbjct 314 AACACTATT--CACACCAATGT-AAAGACGGCGAGCTGGAAACTTGGATTCAATTACTTA 370 Query 431 CTCTTGAGAAA-AATACTAGATTTCTCTCACTTTGTAACAAAC-TTG--G-TA--AAGGT 483 ||||| ||||| || || | | ||||| |||||| |||| | ||| | || ||| Sbjct 371 CTCTTCAGAAACAA-ACCAAAGTTCTCGCACTTTCAAACATTCATTGTAGTTACGGCGGT 429 Query 484 -AGGAGAACCAATGTGCTTCGGTTTTCCCCTAACAC-TTTCTCGCATCCAAAGCTCGCAA 541 ||| | ||||||| ||||| || ||||| ||||| ||| || ||||| | |||| ||| Sbjct 430 AAGG-GTGCCAATGTCCTTCGATTGTCCCCAAACACATTT-TCCCATCCGAGGCTCACAA 487 Query 542 CCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCAAGGA-GTGTGAAAAT 600 | |||||||||| ||||||||| || ||||||| |||||||||| || || | ||| Sbjct 488 CACTCTTCCTACATCGATACGAACTAAAAACCGCAAATGCCTTCAA-GACCTGCCATAAT 546 Query 601 CTGAAGATTCTCAAGCTTGAGGGA-ATCTTAGCTGAAGTTGATGTGTTCAACACAGTTAT 659 || ||||||||||| ||||| | | || || ||||| ||| ||||||||||||||||||| Sbjct 547 CTCAAGATTCTCAAACTTGA-GAATATGTTTGCTGAGGTTAATGTGTTCAACACAGTTAT 605 Query 660 TGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAAT-TGCATGTGGTACAACGAAAAGA 718 |||||| ||||| |||||||||||||| ||||| | | |||||||||||| | || | Sbjct 606 TGCATCGTGTCCCTCTCTCAAGGTGCTAGTGCTTCGTCT-CATGTGGTACAATGCAAGGG 664 Query 719 CCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGATTGCC-CTCATGTT 777 | ||| ||||||||||||| |||||||| ||| |||||||| ||| | || | | ||| Sbjct 665 CTTGCTTGAAGATTCATAACAATAATCTAAAGCTCTTGCATGTGGCCT-CCTATTACGTT 723 Query 778 GATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTTTCTACTTTGCGTTT 837 || ||||||| ||||||||| ||||| |||||||||||||||| |||| || ||| Sbjct 724 CATAGCATTGAAGTGTCTGCACCTCTTTTGGATATTTTCTCCATGGACTACATT---TTT 780 Query 838 GCTAAGGAACAAAACTTTGTCATCAAGGCAC-CAAGAC-TTTTGTT--TAATAA-T--TG 890 | | |||| | ||| | ||||||||| | | |||||| |||| || ||| || | | Sbjct 781 GATGGGGAATATAACATCGTCATCAAGTC-CTCAAGACTTTTTTTTACTAAAAACTACGG 839 Query 891 GACTAAAGATC-TAGAGAAAGTGCCAAACATGAACTACAATATTACATCTCATGCTCAGG 949 | ||| || | |||| ||| |||| | |||| ||||| ||| ||| | |||||| || Sbjct 840 GGCTATCGA-CGCGGAGAGAGTACCAATCCTGAATTACAACATTTCATATAATGCTCGGG 898 Query 950 AGaaaaaaaaTATTGGACATGAGTTCGTGGTGA-GTGGAGATGCTAGCTACTTGC-AAAA 1007 ||| ||||| |||| ||| | ||| |||| | || ||||||||| ||| || | Sbjct 899 AGATGGAAAATCTTGGGCATCACTTCTTGGT-AGGTAGAGATGCTACCTA-TTTCTGGCG 956 Query 1008 GCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACATGCTAAG 1067 |||||| |||||| |||| ||||||| ||| || ||| |||| | | ||| | || Sbjct 957 GCTTAAATCTTTGGCTGTGGCCGTGGATATAATGAACACGAAAGAACTTGAAATGTTCAG 1016 Query 1068 GGACA-TTTTAGTTGCTTGGAATGGAGTATTGGAAGA-GCTCCATATACTATTTAAGGAT 1125 | | | |||||||||| ||||||||| || | ||| | |||| ||||| | |||||| || Sbjct 1017 GCA-AGTTTTAGTTGCATGGAATGGAATAAT-GAAAAGGCTCGATATATTCTTTAAGCAT 1074 Query 1126 AACAATGTCCCTAACTCTAAGGAAGATA-GTGAATCTTCGATTGGTGGAACACAAAAGAA 1184 ||| |||| | | || |||||| | |||||||||| |||||||||||||||||||| Sbjct 1075 AACTATGT--GT-A---TACGGAAGA-AGGTGAATCTTCCATTGGTGGAACACAAAAGAA 1127 Query 1185 AAAGTGGGAGGAGGCAAATCT-GTTTCCCAATGCTGATTTTC-GTGTGGAAGTTATGTGG 1242 |||||||||| | ||| || |||||||||||||| | ||| | ||||||| | ||||| Sbjct 1128 AAAGTGGGAGAA---AAA-CTTGTTTCCCAATGCTG-TATTCCGAGTGGAAGCTGTGTGG 1182 Query 1243 ATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTAACG 1302 |||||| |||||| |||| |||| ||||| |||| |||||||||||||||| ||||| Sbjct 1183 ATGTTTAATTTCAGTGGTTTGGATAAGAAACAGTTTGAATTAGCTTCGCGTTTTATAACG 1242 Query 1303 CAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTCATTTTTTGCAAATGAGAAG 1362 |||||||| |||||||||||||||||||| || |||||||| ||| ||||| || ||| Sbjct 1243 CAAGGGACCGTAATGAAGAAGATGATGATCAAGACGTCTTCCGTTTCTGCAACCGAAAAG 1302 Query 1363 TTGGATA-ACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAATCT 1421 || ||| | ||||||| || |||||||| | |||||||||||||||||| ||||| || Sbjct 1303 TTTTATATA-GAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCT 1361 Query 1422 TAGTATTGAATGCTTCTGA 1440 |||||||| || |||||| Sbjct 1362 TAGTATTGGATATTTCTGA 1380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53859606430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5