BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67390.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908287 jgi|Araly1|908287|Al_scaffold_0002_1368 1507 0.0
Ahg908288 jgi|Araly1|908288|Al_scaffold_0002_1369 758 0.0
> Ahg908287 jgi|Araly1|908287|Al_scaffold_0002_1368
Length=1440
Score = 1507 bits (816), Expect = 0.0
Identities = 1253/1461 (86%), Gaps = 42/1461 (3%)
Strand=Plus/Plus
Query 1 ATGAGTCAATTCCCTCTCTCAATTCTCAAAACCTCTCAACCTCACCATCAGCCCAAATCC 60
||||||| |||||||||||||||||| ||||||||||| ||||||||| | ||||||
Sbjct 1 ATGAGTCTCTTCCCTCTCTCAATTCTCGGAACCTCTCAACTTCACCATCAACTCAAATCG 60
Query 61 ATGAACGCACCACGATCATCGGATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGA- 119
||||||||||||| ||| |||||||||||||||||| |||||||||| ||| ||||
Sbjct 61 ATGAACGCACCACTATCGTCGGATGCAAGAGGCAAAGGTATCCTCATTGAT----TCGAT 116
Query 120 CGACCGGATCAGTAAACTCCCCGACGATGTGTTGGTCATGATCCTAGCAAGTTTGTCCAC 179
|||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 117 CGACCGAATCAGTAAACTCCCCGACGACGTGTTGGTCAAGATCCTAGCAAGTACGTCCAC 176
Query 180 TGAAGATGCTTTGAAGACAAGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 239
||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGAAGATGCTGTCAAGACAGGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 236
Query 240 GCCTTACCTCCACTTCGATTTGCTAAGTGCTACAT--A-CGAGAGTGGACTTATCGCTGC 296
||||||||||||||| ||| |||||| |||||| | | | |||| |||| | | | | |
Sbjct 237 GCCTTACCTCCACTTTGATATGCTAATTGCTACCTTGAACAAGAGGGGACCTCTGGATCC 296
Query 297 TCTTTCCAAT-AGTGTTGCGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATT 355
|||||| ||| | ||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 297 TCTTTCTAATCA-TGTTGCGAAATCGATAACCGAGGTTATAAAAAATCACAATGGTCATC 355
Query 356 TGATGGGTTGCTCAATCCATCATTTCGCACACCATTGTGTAA-ACGGTGTGCTTGAAAAT 414
||||||||||||||||| |||||||||||||||| ||| || |||||| ||| |||| |
Sbjct 356 TGATGGGTTGCTCAATCGATCATTTCGCACACCAGTGTC-AAGACGGTGAGCTCGAAACT 414
Query 415 TGGATTCGATTGCTTACTCTTGAGAAAAATACTAGATTTCTCTCACTTTGTAACAAAC-T 473
||||||| ||| ||||||||| ||||| |||| | | |||||||||| |||| | |
Sbjct 415 TGGATTCAATTACTTACTCTTCAGAAACATACCAAAGCCCTCTCACTTTTTAACCTTCAT 474
Query 474 -T----GGTAAAGGTAGGAGAACCAATGTGCTTCGGTTTTCCCCTAACACTTTCTCGCAT 528
| ||||| |||| |||| |||| || |||| || ||||| ||||| ||||| |||
Sbjct 475 GTTCATGGTAACGGTAAGAGACCCAACGTCCTTCAATTGTCCCCAAACACATTCTCCCAT 534
Query 529 CCAAAGC-TCGCAACCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCAA 587
|||| || || |||| |||||||||| | ||||| |||||| |||| |||||||||||||
Sbjct 535 CCAA-GCCTCTCAACACTCTTCCTACATGGATACAATTTAGAAACCCCACATGCCTTCAA 593
Query 588 GGAGTGTGAA-AATCTGAAGATTCTCAAGCTTGAGGGAATCTTAGCTGAAGTTGATGTGT 646
|||||| || ||||| ||||||||||| |||||| ||||||| ||||| ||||||||||
Sbjct 594 CGAGTGT-AATAATCTCAAGATTCTCAAACTTGAGAGAATCTTTGCTGAGGTTGATGTGT 652
Query 647 TCAACACAGTTATTGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAATTGC-ATGTGG 705
||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||
Sbjct 653 TCAACACAGTTATTGCATCGTGCCCTTCTCTCAAGGTGCTGGTGCTAAAT-GCCATGTGG 711
Query 706 TACAACGAAAAGACCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGAT 765
|||||||| ||| | ||| ||||||||||||| || || || ||||||||||||||||||
Sbjct 712 TACAACGATAAGGCTTGCTTGAAGATTCATAACAACAACCTTAAGGTCTTGCATTTGGAT 771
Query 766 TGCCC-TCATGTTGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTTT 824
| || | |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 772 T-CCTGTAATGTAGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCGTTTA 830
Query 825 CTACTTTGCGTTTGCTAAGGAACAA-AACTTTGTCATCAAGGCACCAAGACTTTTGTTTA 883
||||| | ||||| || |||| | ||||| |||||||| ||||||||| |||||||||
Sbjct 831 CTACTATATGTTTGATA-GGAAGTATAACTTCGTCATCAATGCACCAAGAATTTTGTTTA 889
Query 884 ATAAT-TGGACTAAAGATCTAGAGAA-AGTGCCAAACATGAACTACAATATTACATCTCA 941
| || |||||| | || || ||| | ||||||| |||||||||||| |||||||||||
Sbjct 890 A-AAGCTGGACTCAGGA-CTCGAGGAGAGTGCCATTCATGAACTACAACATTACATCTCA 947
Query 942 TGCTCAGGAGaaaaaaaaTATTGGACATGAGTTCGTGGTGAGTGGAGATGCTAGCTACTT 1001
||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 948 TGCTCAGGAGAAAGAAAATCTTGGACATGAGTTCGTGGTGAGTGGAGATGCTAACTATTT 1007
Query 1002 GCAAAAGCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACAT 1061
|| |||| |||||||||||||||||| | ||||||| ||||||||||| || | ||
Sbjct 1008 TCAGCAGCTCAAGTCTTTGAAGGTGGTCATAGATGTAATGAATTCGAGAGAGGTTGAAAT 1067
Query 1062 GCTAAGGGACATTTTAGTTGCTTGGAATGGAGTATTGGAAGAGCTCCATATACTATTTAA 1121
| | ||||| |||||||| || ||| ||||| || ||||||||||| ||||| |||||||
Sbjct 1068 GTTGAGGGATATTTTAGTAGCGTGGCATGGAATAATGGAAGAGCTCGATATAATATTTAA 1127
Query 1122 GGATAACAATGTCCCTAACTCTAAGGAAGATAGTGAATCTTCGATTGGTGGAACACAAAA 1181
||||||||||||| | || |||||||| |||||||||| || ||||||||||||||
Sbjct 1128 GGATAACAATGTC--T--CT--AAGGAAGAGGGTGAATCTTCCATCGGTGGAACACAAAA 1181
Query 1182 GAAAAAGTGGGAGGAGGCAAATCTGTTTCCCAATGCTGATTTTCGT-GTGGAAGTTATGT 1240
|||||||||||||||| |||| || ||||||||||||||||| || ||||||||| |||
Sbjct 1182 GAAAAAGTGGGAGGAGACAAAACTTTTTCCCAATGCTGATTT-CGGCGTGGAAGTTTTGT 1240
Query 1241 GGATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTAA 1300
||||| || |||||| ||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1241 GGATGGTTAATTTCAGCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTAA 1300
Query 1301 CGCAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTC-ATTTTTTGCAAATGAG 1359
||||||||| ||||||||||||||||||| || |||||||| |||||| ||||| |||
Sbjct 1301 TGCAAGGGACAATAATGAAGAAGATGATGATCAAGACGTCTTCGATTTTT-GCAAAGGAG 1359
Query 1360 AAGTTGGATAACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAAT 1419
||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1360 AAGTTAGAGAACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAAT 1419
Query 1420 CTTAGTATTGAATGCTTCTGA 1440
||||||||||||||||| |||
Sbjct 1420 CTTAGTATTGAATGCTTTTGA 1440
> Ahg908288 jgi|Araly1|908288|Al_scaffold_0002_1369
Length=1380
Score = 758 bits (410), Expect = 0.0
Identities = 1083/1399 (77%), Gaps = 82/1399 (6%)
Strand=Plus/Plus
Query 83 ATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGACGACCGGATCAGTAAACTCCCCG 142
|||||||||| | ||| ||||| |||||||| | ||||||||| ||| |||| || |
Sbjct 23 ATGCAAGAGGTAGACGGATCCTTATCGATCC---GGTCGACCGGATTAGTCAACTACCGG 79
Query 143 ACGATGTGTTGGTCATGATCCT--AGCAAGTTTG-TCCACTGAAGATGCTTTGAAGACAA 199
|| ||||||||||||||||||| | ||| || | || |||||||| | | |||||
Sbjct 80 ACAATGTGTTGGTCATGATCCTCAAACAA--ATGAT-AACAGAAGATGCCGTCAGGACAA 136
Query 200 GTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGTGCCTTACCTCCACTTCGATT 259
|||| ||||||| ||||||||||| ||||||||| ||||||||||| ||| |||||||
Sbjct 137 GTGTCTTGTCTAAACGATGGAAGAGTGTATGGAAGCAAGTGCCTTATCTCTTCTTCGATA 196
Query 260 TGCTAAGT--GC-TACATACGAGA-GTGG-ACTTAT-CGCTGCTCTTTCCAATAGTGTTG 313
||| || | || | | || || | ||| || | | | || ||| ||| ||| ||||||
Sbjct 197 TGC-AA-TACGCTTTCTTAAGAAACATGGAACCTCTGCCCT-CTCATTCTAATCGTGTTG 253
Query 314 CGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATTTGATGGGTTGCTCAATCC 373
| ||| |||||||||||||||||| |||||||||||| || || || | ||| |||||
Sbjct 254 CCAAATTGATAACCCAGGTTATAAAGAATCACAATGGTGATCTGGTGAGCTGCAGAATCC 313
Query 374 ATCA-T-TTCGCACACCATTGTGTAA-ACGGTGTGCTTGAAAATTGGATTCGATTGCTTA 430
| || | || ||||||| ||| || |||| | ||| |||| |||||||| ||| ||||
Sbjct 314 AACACTATT--CACACCAATGT-AAAGACGGCGAGCTGGAAACTTGGATTCAATTACTTA 370
Query 431 CTCTTGAGAAA-AATACTAGATTTCTCTCACTTTGTAACAAAC-TTG--G-TA--AAGGT 483
||||| ||||| || || | | ||||| |||||| |||| | ||| | || |||
Sbjct 371 CTCTTCAGAAACAA-ACCAAAGTTCTCGCACTTTCAAACATTCATTGTAGTTACGGCGGT 429
Query 484 -AGGAGAACCAATGTGCTTCGGTTTTCCCCTAACAC-TTTCTCGCATCCAAAGCTCGCAA 541
||| | ||||||| ||||| || ||||| ||||| ||| || ||||| | |||| |||
Sbjct 430 AAGG-GTGCCAATGTCCTTCGATTGTCCCCAAACACATTT-TCCCATCCGAGGCTCACAA 487
Query 542 CCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCAAGGA-GTGTGAAAAT 600
| |||||||||| ||||||||| || ||||||| |||||||||| || || | |||
Sbjct 488 CACTCTTCCTACATCGATACGAACTAAAAACCGCAAATGCCTTCAA-GACCTGCCATAAT 546
Query 601 CTGAAGATTCTCAAGCTTGAGGGA-ATCTTAGCTGAAGTTGATGTGTTCAACACAGTTAT 659
|| ||||||||||| ||||| | | || || ||||| ||| |||||||||||||||||||
Sbjct 547 CTCAAGATTCTCAAACTTGA-GAATATGTTTGCTGAGGTTAATGTGTTCAACACAGTTAT 605
Query 660 TGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAAT-TGCATGTGGTACAACGAAAAGA 718
|||||| ||||| |||||||||||||| ||||| | | |||||||||||| | || |
Sbjct 606 TGCATCGTGTCCCTCTCTCAAGGTGCTAGTGCTTCGTCT-CATGTGGTACAATGCAAGGG 664
Query 719 CCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGATTGCC-CTCATGTT 777
| ||| ||||||||||||| |||||||| ||| |||||||| ||| | || | | |||
Sbjct 665 CTTGCTTGAAGATTCATAACAATAATCTAAAGCTCTTGCATGTGGCCT-CCTATTACGTT 723
Query 778 GATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTTTCTACTTTGCGTTT 837
|| ||||||| ||||||||| ||||| |||||||||||||||| |||| || |||
Sbjct 724 CATAGCATTGAAGTGTCTGCACCTCTTTTGGATATTTTCTCCATGGACTACATT---TTT 780
Query 838 GCTAAGGAACAAAACTTTGTCATCAAGGCAC-CAAGAC-TTTTGTT--TAATAA-T--TG 890
| | |||| | ||| | ||||||||| | | |||||| |||| || ||| || | |
Sbjct 781 GATGGGGAATATAACATCGTCATCAAGTC-CTCAAGACTTTTTTTTACTAAAAACTACGG 839
Query 891 GACTAAAGATC-TAGAGAAAGTGCCAAACATGAACTACAATATTACATCTCATGCTCAGG 949
| ||| || | |||| ||| |||| | |||| ||||| ||| ||| | |||||| ||
Sbjct 840 GGCTATCGA-CGCGGAGAGAGTACCAATCCTGAATTACAACATTTCATATAATGCTCGGG 898
Query 950 AGaaaaaaaaTATTGGACATGAGTTCGTGGTGA-GTGGAGATGCTAGCTACTTGC-AAAA 1007
||| ||||| |||| ||| | ||| |||| | || ||||||||| ||| || |
Sbjct 899 AGATGGAAAATCTTGGGCATCACTTCTTGGT-AGGTAGAGATGCTACCTA-TTTCTGGCG 956
Query 1008 GCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACATGCTAAG 1067
|||||| |||||| |||| ||||||| ||| || ||| |||| | | ||| | ||
Sbjct 957 GCTTAAATCTTTGGCTGTGGCCGTGGATATAATGAACACGAAAGAACTTGAAATGTTCAG 1016
Query 1068 GGACA-TTTTAGTTGCTTGGAATGGAGTATTGGAAGA-GCTCCATATACTATTTAAGGAT 1125
| | | |||||||||| ||||||||| || | ||| | |||| ||||| | |||||| ||
Sbjct 1017 GCA-AGTTTTAGTTGCATGGAATGGAATAAT-GAAAAGGCTCGATATATTCTTTAAGCAT 1074
Query 1126 AACAATGTCCCTAACTCTAAGGAAGATA-GTGAATCTTCGATTGGTGGAACACAAAAGAA 1184
||| |||| | | || |||||| | |||||||||| ||||||||||||||||||||
Sbjct 1075 AACTATGT--GT-A---TACGGAAGA-AGGTGAATCTTCCATTGGTGGAACACAAAAGAA 1127
Query 1185 AAAGTGGGAGGAGGCAAATCT-GTTTCCCAATGCTGATTTTC-GTGTGGAAGTTATGTGG 1242
|||||||||| | ||| || |||||||||||||| | ||| | ||||||| | |||||
Sbjct 1128 AAAGTGGGAGAA---AAA-CTTGTTTCCCAATGCTG-TATTCCGAGTGGAAGCTGTGTGG 1182
Query 1243 ATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTAACG 1302
|||||| |||||| |||| |||| ||||| |||| |||||||||||||||| |||||
Sbjct 1183 ATGTTTAATTTCAGTGGTTTGGATAAGAAACAGTTTGAATTAGCTTCGCGTTTTATAACG 1242
Query 1303 CAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTCATTTTTTGCAAATGAGAAG 1362
|||||||| |||||||||||||||||||| || |||||||| ||| ||||| || |||
Sbjct 1243 CAAGGGACCGTAATGAAGAAGATGATGATCAAGACGTCTTCCGTTTCTGCAACCGAAAAG 1302
Query 1363 TTGGATA-ACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAATCT 1421
|| ||| | ||||||| || |||||||| | |||||||||||||||||| ||||| ||
Sbjct 1303 TTTTATATA-GAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCT 1361
Query 1422 TAGTATTGAATGCTTCTGA 1440
|||||||| || ||||||
Sbjct 1362 TAGTATTGGATATTTCTGA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5