BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67400.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908290 jgi|Araly1|908290|Al_scaffold_0002_1371 1430 0.0
> Ahg908290 jgi|Araly1|908290|Al_scaffold_0002_1371
Length=915
Score = 1430 bits (774), Expect = 0.0
Identities = 860/903 (95%), Gaps = 0/903 (0%)
Strand=Plus/Plus
Query 14 AACAAGCACGTTCTCTCCGCCAAAACCAGCCGGAGAAAATATCTCAGTTCAACGGAGATG 73
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 13 AACAAGCACGTTCTCTCCGCCAAAACCAGCCGGAGAAAATATCTCATTTCAACGAAGATG 72
Query 74 CGAGTTGTCAGAATATCATGCGTCGGGACACGTCATCTCTCACCTCCCTCCTCCGTTCGC 133
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 73 CGAGTCGTCAGAATTTCATGCGTTGGGACACGTCATCTCTCACCTCCCTCCTCCGCCCGC 132
Query 134 GGTTGCGAAGCCCACTCCGACGACGTCTCTGCTTCCTCAGCCGGACTAATTAACGCGGAT 193
|||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||
Sbjct 133 GGTTGCGACGCCCATTCCGACGACGTATCTGCCTCCTCCGCCGGACTGATTAATGCGGAT 192
Query 194 GCAGAAGATGCGAGTTGTAGTAGCACGCCTAGTTGGAGAATCAAGAAGAGTCTAACATGT 253
||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 193 GCAGAGGATGCGAGCTGTAGTAGCACGCCTAGTTGGAGAATCAAGAAAAGCCTAACATGT 252
Query 254 GTTTGCTTTAACCGCAAGAGAGCATATGAACGCATTTGCTCTAACTTGACACCATTGCAG 313
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 253 GTTTGCTTTAACCGCAAGAGAGCTTATGAACGCATTTGCTCTAACTTGACACCATTGCAG 312
Query 314 GAAGAAAGACTTAAAAGGTTGAGGAAGAGAATGAAGAATTACTATGATGCATCACGGCCC 373
||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 313 GAAGAAAGACTGAAGAGGTTGAGGAAGAGAATGAAGAATTACTTTGATGCATCGCGGCCC 372
Query 374 GATCATCAGGATGCATTAAGAGCACTGTGGTCAGCAACGTATCCTGATGAAAAGCTTCAA 433
||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 373 GATCATCAGGATGCATTGAGAGCACTGTGGTCAGCTACGTATCCTGGTGAAAAGCTTCAA 432
Query 434 GATTTGATCTCAGACCAGTGGAAAAATATGGGATGGCAAGGAAAAGATCCATCCACTGAT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GATTTGATCTCAGACCAGTGGAAAAATATGGGATGGCAAGGAAAAGATCCATCCACTGAT 492
Query 494 TTCAGAGGAGCTGGATTCATTTCACTGGAGAATCTTCTATTCTTTGCAAAGACTTTCTCG 553
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct 493 TTCAGAGGAGCTGGATTCATATCACTGGAGAATCTTCTATTTTTTGCCAAGACATTCTCG 552
Query 554 ACTTCGTTTCAGCGTCTGTTGAATAAACAAGGAGGCAAAAGAGCGGCTTGGGAATATCCA 613
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 553 ACTTCGTTTCAGCGTCTGTTAAAGAAACAAGGAGGCAAAAGAGCGGCTTGGGAATATCCA 612
Query 614 TTCGCTGTAGCGGGCGTCAACATAACCTTCATGATCATGCAAATGCTTGACCTTGAAGCA 673
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 613 TTCGCGGTAGCAGGCGTCAACATAACCTTCATGATCATGCAAATGCTCGACCTAGAAGCA 672
Query 674 TCAAAACCTAGGAGTTTTATACGGTTGGTGTTCTTACAAATGTTGTCAGAAAGCGAATGG 733
||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 673 TCAAAGCCTAGGAGTTTTATACGGTTGGTGTTCTTACAAATGCTGTCAGAAAATGAATGG 732
Query 734 GCCTTTGATTTGCTTTACTGTGTGGCCTTTGTGGTAATGGACAAGCAATGGCTGGACAAG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GCCTTTGATTTGCTTTACTGTGTGGCCTTTGTGGTAATGGACAAGCAATGGCTGGACAAG 792
Query 794 AACGCCACCTACATGGAATTCAACGATGTGCTAAGATGTACAAGGGGGCAGCTTGAGAGA 853
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 793 AACGCCACCTACATGGAATTCAACGATGTGCTAAGATCTACAAGGGGTCAGCTTGAGAGA 852
Query 854 GAGCTGATGATGGATGATGTTTTCAGAATTGAGGATATGCCTTCTTTCTCTCTTCTCTCT 913
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 853 GAGCTGATGATGGATGATGTTTTCAGAATTGAGGATATGCCTTCTTTTTCTCTTCTCTCT 912
Query 914 TAG 916
|||
Sbjct 913 TAG 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5