BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67410.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338977 jgi|Araly1|338977|fgenesh1_pg.C_scaffold_2001076 2019 0.0
> Ahg338977 jgi|Araly1|338977|fgenesh1_pg.C_scaffold_2001076
Length=1290
Score = 2019 bits (1093), Expect = 0.0
Identities = 1228/1294 (95%), Gaps = 5/1294 (0%)
Strand=Plus/Plus
Query 100 ATGTACGGCAAAACAATATGTACAATCGTCTTCTTCATCTTCCTCGTTGCTTCATTCTCA 159
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTACGGAAAAACAATATGCACAATCGTCTTCTTCATCTTCCTCGTTGCTTCTTTCTCA 60
Query 160 ATCTACATGGGAACCGTCGATCCAAGACCTTACTTCTACCTCCTCCAATCCCAACCCAAT 219
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 ATCTACATGGGAACAGTCGATCCAAGACCTTACTTCTATCTCCTCCAATCACAACCCAAT 120
Query 220 GGAGCTTCTTCTCCTTGTAGCTCCTCTGGAAAACCTCTCCGTGTCTTCATGTACGATCTC 279
| || ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 121 GTAG---CTTCTCCTTGTAGCTCCACCGGAAAACCTCTCCGTGTCTTCATGTACGATCTC 177
Query 280 CCACGAAAGTTTAATATCGCGATGATGGATCCTCATAGCTCAGATGTTGAGCCTATCACA 339
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 CCACGCAAGTTTAATATCGCGATGATGGATCCTCATAGCTCAGATGTTGAGCCTCTCACA 237
Query 340 GGGAAGAATTTACCTTCTTGGCCTCAGACTTCTGGGATTAAAAGACAACATAGCGTTGAG 399
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GGGAAGAATTTACCTTCTTGGCCTCAGACTTCTGGGATTAAGAGACAACATAGCGTTGAG 297
Query 400 TATTGGCTTATGGCTTCTCTTCTTAACGGTGGTGAGGATGAGAATGAAGCAATTAGGGTT 459
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 298 TATTGGCTTATGGCTTCTCTTCTTAATGGTGGTGATGATGAGAATGAAGCAATTAGGGTT 357
Query 460 TTTGATCCGGATTTGGCGGATGTGTTTTATGTTCCTTTTTTCTCTTCGTTGAGTTTTAAT 519
|||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 358 TTTGATCCTGATTTGGCGGATGCGTTTTATGTTCCTTTTTTTTCTTCGTTGAGTTTTAAC 417
Query 520 ACTCATGGGAAGAACATGACTGATCCAGATACTGAATTTGATCGGCTATTACAGGTTGAG 579
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 418 ACTCATGGGAAGAACATGACTGATCCAGATACTGAATTTGATCGGCAATTACAGGTTGAG 477
Query 580 TTAATGGAGTTTCTTGAGAATTCGAAGTATTGGAATCGTTCAGGAGGTAAAGATCATGTG 639
|||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 478 TTAATGGAGTTTCTTGAGGGTTCTAAGTATTGGAATCGATCAGGAGGTAAAGATCATGTG 537
Query 640 ATTCCGATGACACATCCTAATGCTTTCAGATTTCTAAGGCAACAAGTGAATGCGTCGATT 699
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 538 ATTCCGATGACACATCCTAATGCTTTTAGATTTCTGAGGCAACAAGTGAATGCATCGATT 597
Query 700 CTCATTGTTGTGGATTTTGGGCGTTATTCTAAAGACATGGCACGTTTAAGTAAAGACGTA 759
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 598 CTCATTGTTGTGGATTTTGGGCGTTACGCTAAGGACATGGCACGTTTAAGTAAAGATGTG 657
Query 760 GTTTCTCCTTATGTACATGTTGTTGAGTCTTTGAATGAGGAGGGCGATGATGGTATG-GG 818
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |
Sbjct 658 GTTTCTCCTTATGTTCATGTTGTTGAGTCTTTGAATGAGGAGGATGATGATGGTTTGACG 717
Query 819 AGATCCTTTTGAGGCTCGTACAACGCTTCTTTACTTTCGTGGGAATACAGTTAGGAAAGA 878
||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 718 -GATCCGTTTGAGGCTCGTACTACGCTTCTTTACTTTCGTGGGAATACGGTTAGGAAAGA 776
Query 879 TGAAGGTAAAATTCGTCTGAGGTTGGAGAAGTTATTAGCTGGTAACTCTGATGTTCACTT 938
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 777 CGAAGGTAAAATCCGTCTGAGGTTGGAGAAGTTATTAACTGGTAACTCTGATGTTCACTT 836
Query 939 TGAGAAAAGTGTAGCTACTACACAAAACATCAAAGTGTCTACGGAAGGGATGAGATCTTC 998
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 TGAGAAAAGTGTAGCAACTACACAAAACATCAAAGTGTCTACGGAAGGGATGAGATCATC 896
Query 999 TAAGTTTTGTCTGCATCCAGCTGGAGACACTCCATCTTCATGCCGGTTATTTGATGCCAT 1058
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 897 AAAATTCTGTCTGCATCCAGCTGGAGACACTCCATCTTCATGCCGCTTATTTGATGCCAT 956
Query 1059 TGTCAGTCACTGCATTCCGGTCATCATAAGCGACAAAATCGAGCTGCCCTTTGAAGATGA 1118
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 TGTCAGTCACTGCATTCCGGTCATCATAAGCGACAAAATCGAACTGCCCTTTGAAGATGA 1016
Query 1119 AATAGACTACTCGGAATTCTCACTGTTTTTCTCAATAAAAGAGTCGCTTGAACCGGGCTA 1178
|||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1017 AATAGACTACTCAGAATTCTCACTCTTTTTCTCAATAAAAGAGTCACTAGAACCGGGCTA 1076
Query 1179 CATCCTCAACAACCTCCGCCAATTTCCCAAGGAGAAATGGCTGGAAATGTGGAAACGACT 1238
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 CATCCTCAACAAACTCCGCCAGTTTCCCAAGGAGAAATGGCTGGAAATGTGGAAACGCCT 1136
Query 1239 GAAGAACGTATCTCATCACTTTGAGTTCCAGTACCCGCCAAAGAGAGAAGATGCAGTAAA 1298
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1137 GAAGAACGTATCTCATCACTTCGAGTTCCAGTACCCACCAAAGAGAGAAGATGCAGTAAA 1196
Query 1299 CATGTTGTGGAGACAAGTGAAACACAAGATCCCTTATGTCAAGCTCGCTGTACATAGAAA 1358
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1197 CATGTTGTGGAGACAGGTGAAACACAAAATCCCTAATGTCAAGCTCGCTGTACATAGAAA 1256
Query 1359 CCGGAGGTTGAAAGTCCCTGATTGGTGGCTTTGA 1392
||||||||||||||||||||||||||||||||||
Sbjct 1257 CCGGAGGTTGAAAGTCCCTGATTGGTGGCTTTGA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5