BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67430.1
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475841 jgi|Araly1|475841|fgenesh2_kg.2__971__AT1G67430.1 1072 0.0
Ahg472943 jgi|Araly1|472943|fgenesh2_kg.1__2897__AT1G27400.1 601 3e-171
> Ahg475841 jgi|Araly1|475841|fgenesh2_kg.2__971__AT1G67430.1
Length=683
Score = 1072 bits (580), Expect = 0.0
Identities = 663/700 (95%), Gaps = 17/700 (2%)
Strand=Plus/Plus
Query 1 TCTTCACAAATCTCACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGGTGAAGT 60
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCCCAAATTTCACAACTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGGTGAAGT 60
Query 61 ACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGCTAGAGGATCCGATCTTAGGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGCTAGAGGATCCGATCTTAGGG 120
Query 121 TTCACTTCAAGAATACTAGGGAAACAGCGCACGCAATCAGGAAGCTACCATTGATCAAGG 180
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TTCACTTCAAGAACACTAGGGAAACAGCGCACGCCATCAGGAAGCTACCATTGATCAAGG 180
Query 181 CGAAGAGGTACCTTGAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCACACGTTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGAAGAGGTACCTTGAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCACACGTTTCT 240
Query 241 GCAGAGGTGTTGGGAGAACTGCTCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAGAGGTGTTGGGAGAACTGCTCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTT 300
Query 301 GGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTG 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCCTGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTG 360
Query 361 AGGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAACCAGGCCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAACCAGGCCG 420
Query 421 CAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCCTTACATGTCCAACC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCCTTACATGTCCAACC 480
Query 481 CATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGCCGGAGA 540
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 481 CATGTCACATTGAGTTGATTTTGTCAGAGAAGGAAGAACCTGTCAAGAAAGAGCCGGAGA 540
Query 541 CTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGctttctttctttattttcatg 600
|||||||||||||||||||||||||||| |||||||||||||||||| ||| | ||
Sbjct 541 CTCAGTTGGCTGCCAAGTCCAAGAAATCTGCAGCTTAAGCTTTCTTTGTTT-T----AT- 594
Query 601 tcccttgtgttcttgaacgagattttgttctcttttttctttAGCTCGAATCGTTTTGTA 660
|| ||| | | | || |||||||| |||||| |||||| || ||||||||||||
Sbjct 595 TC--TTGAAT-C---A--GA--TTTTGTTCGCTTTTT-CTTTAGTTCAAATCGTTTTGTA 643
Query 661 AGACAATGGATAGATTTATCTTGGAAATTTTCGTTCTATG 700
|||| |||||||||||| ||||||| |||||||||| |||
Sbjct 644 AGACCATGGATAGATTTTTCTTGGAGATTTTCGTTCAATG 683
> Ahg472943 jgi|Araly1|472943|fgenesh2_kg.1__2897__AT1G27400.1
Length=672
Score = 601 bits (325), Expect = 3e-171
Identities = 453/515 (88%), Gaps = 8/515 (2%)
Strand=Plus/Plus
Query 56 GAAGTACTCGCAAGAACCCGACAA-TCAGACCAAGTCTTGCAAGGCTAGAGGATCCGATC 114
||||||||| || || |||||||| || ||||| ||||||||||| |||||| ||||||
Sbjct 6 GAAGTACTCTCAGGAGCCCGACAATTC-CACCAAATCTTGCAAGGCAAGAGGAGCCGATC 64
Query 115 TTAGGGTTCACTTCAAGAATACTAGGGAAACAGCGCACGCAATCAGGAAGCTACCATTGA 174
| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 65 TCAGGGTCCACTTCAAGAACACTAGGGAAACAGCGCACGCCATAAGGAAGCTACCATTGA 124
Query 175 TCAAGGCGAAGAGGTACCTT-GAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCACA 233
|||||| || ||||| ||| || ||||| ||||||||||||||||| || ||||||||
Sbjct 125 ACAAGGCCAAAAGGTA-CTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACC 183
Query 234 CGTTTCTG-CAGAGGTGTTGGGAGAACTGCTCAAGCTAAGAACAGGCACTCTAATGGTCA 292
|||||||| | | |||||||| | |||||||| || ||||||||||| ||||| |||||
Sbjct 184 CGTTTCTGTC-GTGGTGTTGGTCGTACTGCTCAGGCAAAGAACAGGCATTCTAACGGTCA 242
Query 293 AGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGAT-TTGCTCAAGAACGCTGAGA 351
|| |||||||| || || ||||||||||| ||||||||| || |||||||| |||||||
Sbjct 243 GGGTCGTTGGCCTGCTAAATCTGCTCAGTTCGTTCTTGATCTT-CTCAAGAATGCTGAGA 301
Query 352 GCAATGCTGAGGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGA 411
||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 302 GCAATGCTGAGGTCAAAGGTTTGGATGTTGATGCCCTTTTCATTTCTCACATCCAAGTGA 361
Query 412 ACCAGGCCGCAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCCTTACA 471
|||| || ||||| || |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct 362 ACCAAGCAGCAAAACAGAGGAGAAGGACTTATCGGGCTCATGGAAGAATCAATCCTTACA 421
Query 472 TGTCCAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAG 531
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 422 TGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAG 481
Query 532 AGCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAA 566
|||||||||| |||||||| || ||||| ||||||
Sbjct 482 AGCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27257885655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5