BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67440.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925994 jgi|Araly1|925994|scaffold_201555.1 2076 0.0
Ahg908296 jgi|Araly1|908296|Al_scaffold_0002_1377 470 2e-131
> Ahg925994 jgi|Araly1|925994|scaffold_201555.1
Length=1333
Score = 2076 bits (1124), Expect = 0.0
Identities = 1267/1337 (95%), Gaps = 5/1337 (0%)
Strand=Plus/Plus
Query 149 AACCCCAACCGAGCAAAAATATGCTCAGAGCGAAGCACATCGGTAAAAATTACTCCTCCT 208
|||||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1 AACCCCAACCTAGTAAGAATATGCTCAGAGCGAAGCATATCGGTAAAAATTACTCTTCCT 60
Query 209 CCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTG 268
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CCTTGTCACCGGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATCG 120
Query 269 GTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATT 328
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GTACTGTTGCCACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAGTT 180
Query 329 CTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTGCTTTGTGTGG 388
|||||| ||||| | |||| ||||||| || |||||||||||||| ||||||||||| |
Sbjct 181 CTGTGAAGAGTG--G-TGATGATGATTCGTCTAAGACTGGTGTTGAGTTGCTTTGTGTAG 237
Query 389 TGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTG 448
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 TGAGAGCTGTGTTGAAGAAGATACGAAGGAGAGTTTTGGTTGGAGATAAGGTTCTTGTTG 297
Query 449 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGACGTTCGG 508
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 298 GATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTTTCATCGCCGCTCGG 357
Query 509 AGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATC 568
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 AGATTTTGGATCCACCGGTTGCGAACGTTGATCATTTGCTGGTTCTTTTCTCTTTGGATC 417
Query 569 AACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTA 628
|||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 418 AACCGAAACTGGAGCTGTTCACTCTCACTAGGTTCTTGGTGGAAGCTGAATCTACTCGAA 477
Query 629 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGTGAAGAGGAATTGGAAACTT 688
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 478 TTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGCGAAGAGGAATTGGAATCTT 537
Query 689 GGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 748
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAAGATAAGATTGCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAG 597
Query 749 ATGGACTTGATGATATTGCGTTTGTTCTGAGAGA-TCAGACTTCTGTGATTGTTGGACCT 807
| |||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 598 ACGGACTTGATGCCATTGCGTTTGTTCTGCG-GAATCAGACTTCTGTGATTGTTGGACCT 656
Query 808 AGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAGGAGTAATCATGGTGGTGGTGTG 867
|||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||||||
Sbjct 657 AGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGGAGTAACCATGGTGGTGGTGTG 716
Query 868 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTGGAAGATGAGAATTGGTTTGAGCCTATGTTAGGTAATAAGTGGTTTGATGATCAGCGA 776
Query 928 GTAGGGGAAGTTTCGAGTAGAAGTGGTAGAGGTAAACATACAACACGAAATGTATCGCTA 987
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 GTAGGGGAAGTGTCTAGTAGAAGTGGTCGAGGTAAACATACAACACGAAATGTATCGCTA 836
Query 988 CTGCCGGTTTCTGAAGGTGGTTACCTCGCTGATACTCCTGGCTTTAACCAGCCTAGTTTG 1047
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 CTGCCGATTTCTGAAGGTGGTTACCTCGCTGATACACCTGGCTTTAACCAGCCTAGTTTG 896
Query 1048 CTGAAAGTAACGAAGCATTCACTAGCTCACTGTTTTCCTGAGATACGGAACATGATTGAG 1107
||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 897 CTGAAAGTAACAAAGCAATCACTTGCACACTGCTTTCCTGAGATACGGAACATGATTGAG 956
Query 1108 AGCGAAAAATGTGGATTCAGAGACTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1167
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 957 GGCGAAAAATGTGGATTCAGAGATTGCTTGCATATTGGGGAACCAGGATGTGTTGTGAAA 1016
Query 1168 GGTGACTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1227
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGTGATTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAA 1076
Query 1228 GAATTTCAGCTTAGGACTTTTGGAACCAAAAGGGAAGATGATGTTAGGTACAAGGTGGGA 1287
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 GAGTTTCAGCTTAGGACTTTTGGAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGA 1136
Query 1288 GACATGGGTGTGAAACATGCTGAACCACGGTTAATGCCTAAGAAGCATAGGAGAGAGTCA 1347
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1137 GACATGGGTGTGAAACATGCTGAACCGCGGCTAATGCCTAAGAAGCATAGGAGAGAGTCA 1196
Query 1348 AGGAAGAAAACGAAACAGACAATGATCAGTGAGCTGGATGAGTTCGAAGATGAAGACAGT 1407
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1197 AGGAAGAAAACTAAACAGACAATGATCAGTGAGCTTGATGAGTTCGAAGATGAAGACAGT 1256
Query 1408 GATTTGTACATAGAGAACGACCCAATCGTCCAAGCCATTGAGAATGAGAATAAAAGACAA 1467
|| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 1257 GACTTGGACATAGAGAACGACCCAATCATCCGAGCCATTGAGAATGAGAATAAATGACAA 1316
Query 1468 TGAGAGAACTCAAGTTT 1484
|||||||| ||| ||||
Sbjct 1317 TGAGAGAAATCATGTTT 1333
> Ahg908296 jgi|Araly1|908296|Al_scaffold_0002_1377
Length=1401
Score = 470 bits (254), Expect = 2e-131
Identities = 503/618 (81%), Gaps = 38/618 (6%)
Strand=Plus/Plus
Query 258 TCAAGCTATTGGTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGA 317
|||||| || ||||| |||| || ||||||||| ||| |||||||||||||||||||||
Sbjct 237 TCAAGCCATCGGTACAATCGCCACCGCTCAAGCGGACTATATGCGCGTCATTGTTCAAGA 296
Query 318 TGTAGCTAATTCTGTGACGAGTGATGAT-GATAATGATTCTTCAAAGACTGGTGTTGAAT 376
|||| | | ||| ||||||| || || |||| | | |||| ||| ||||| |
Sbjct 297 TGTA-C-----C--TGA-GAGTGATTATGGA-GATGA-TGAT--AAGATTGGCGTTGAGT 343
Query 377 TGCTTTGTGTGGTGAG--AGCTGTGTTGAAGAAAATACGAAGGAGAGTT-TTAGTTGGAG 433
|||||||||||||||| || | ||||||| || || | |||| ||| || ||||| |
Sbjct 344 TGCTTTGTGTGGTGAGAAAG-T-TGTTGAACAAGATTGGTAGGACTGTTCTT-GTTGGTG 400
Query 434 ATAAGGTTCTTGTTGGATCTA-TTGATTGGGTTGATAGAAGAG-GAATGATTGA-GAATG 490
|||| ||||||| ||||| | |||||||| ||||| | |||| || || | | ||||
Sbjct 401 ATAAAGTTCTTG-TGGATAAAGTTGATTGGATTGATCGGAGAGCTAA-GA-TCATCAATG 457
Query 491 TGTTTCATCGACGT-TCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTT 549
||||| ||||| || |||||||||||||| ||||| |||||||| |||||||| || | |
Sbjct 458 TGTTTGATCGA-GTCTCGGAGATTTTGGAGCCACCGGTTGCGAATGTTGATCACTTAC-T 515
Query 550 G-TTCTTTTCTCT-TTGGATCAACCGAA-ACTTGAGCCGTTTACTCTTACTAGGTTCTTG 606
| |||| |||||| || |||||||| || | |||| || ||||| |||||||||||||||
Sbjct 516 GATTCTCTTCTCTCTT-GATCAACCTAAGA-TTGATCCATTTACACTTACTAGGTTCTTG 573
Query 607 GTGGAAGCTGAATCTACTCGTATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATT 666
|||||||||||||||| | | |||| | | ||| |||||||||| ||| ||||||| |
Sbjct 574 GTGGAAGCTGAATCTATTGGAATTCGAGTCACAATTGCTTTGAACAAATGTGAACTCGTC 633
Query 667 AGTGAAGAGGAATTGGAAACTTGGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTG 726
| | |||||||| ||||| |||||||| |||| |||||| | ||||||||||||||||||
Sbjct 634 ACTCAAGAGGAAGTGGAATCTTGGAAGGTAAGATTGCGTAGTTGGAACTATGAACCATTG 693
Query 727 TTTTGTAGTGTGGGAACTAAAGAT-GGACTTGATGATATTGCGTTTGTTCTGAGAGATCA 785
||||| ||||||||||| |||| | ||||||||||| ||||||||| ||| || ||||
Sbjct 694 TTTTGCAGTGTGGGAACAAAAG-TCGGACTTGATGAGATTGCGTTTAACCTGCGAAATCA 752
Query 786 GACTTCTGTGATTGTTGGACCTAGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAG 845
|||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 753 GACTTCTGTGGTTGTTGGACCTAGTGGTGTTGGAAAGTCGAGCTTAATCAATATATTGAG 812
Query 846 GAGTAA-TCATGGTGGTG 862
|||| | |||||||||
Sbjct 813 AAGTAGCT-ATGGTGGTG 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5