BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67455.1

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461          58.4    6e-08
  Ahg933952 jgi|Araly1|933952|scaffold_401940.1                       56.5    2e-07


> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110

 Score = 58.4 bits (31),  Expect = 6e-08
 Identities = 36/38 (95%), Gaps = 1/38 (3%)
 Strand=Plus/Plus

Query  174  CAACACTAGGCTCGTGGTTTGGAACCCGTATTTGGGGA  211
            ||| |||||||||||||||||||||||||||| |||||
Sbjct  360  CAAGACTAGGCTCGTGGTTTGGAACCCGTATT-GGGGA  396


> Ahg933952 jgi|Araly1|933952|scaffold_401940.1
Length=677

 Score = 56.5 bits (30),  Expect = 2e-07
 Identities = 36/39 (92%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  176  ACACTAGGCTCGTGGTTTGGAACCCGTATTTGGGGAAAA  214
            |||||||||||||||||||||||||||||  |||| |||
Sbjct  71   ACACTAGGCTCGTGGTTTGGAACCCGTATACGGGGCAAA  109



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5