BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67460.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908296 jgi|Araly1|908296|Al_scaffold_0002_1377 1247 0.0
Ahg925994 jgi|Araly1|925994|scaffold_201555.1 728 0.0
> Ahg908296 jgi|Araly1|908296|Al_scaffold_0002_1377
Length=1401
Score = 1247 bits (675), Expect = 0.0
Identities = 797/855 (93%), Gaps = 11/855 (1%)
Strand=Plus/Plus
Query 251 ACATTTTCTTCCGCCGCCGCTCTCACCTCCATCCTCCGTCGTACAACGATCTATCACGGC 310
||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||
Sbjct 8 ACATTTTCTTCCGCCGCCGCTCTCACCTCCATCCTCCGTCGTATATCTATCTACCACGGC 67
Query 311 GGAT-TTGGAACT-GGTCTCCGAATCCGCCGCAGCTTTTATTTTCTCTCAGCGATACGAC 368
|| | |||||| | || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 68 GG-TGTTGGAA-TCGG-ATCGGAATCCGCCGCAGCTTTTATTTTCTCTCAGCGAGACGAC 124
Query 369 AAGAGAACCCTAATGTCACTAAAAAT-CCC--CACCCGA---ACAAGACTATTCTCAGAT 422
||||||||||||||||| ||| |||| ||| ||||||| | ||||||||||||||||
Sbjct 125 AAGAGAACCCTAATGTCTCTAGAAATCCCCAGCACCCGAGCCAGAAGACTATTCTCAGAT 184
Query 423 CCTTCTTAGCTCCGGTTCTCCCGTTAGACGAAAAACCTAACCTCGTTGAGCTTCAAGCCA 482
|||||||||||||||||||| |||||||||| |||||||| ||| | | ||||||||||
Sbjct 185 CCTTCTTAGCTCCGGTTCTCTCGTTAGACGACAAACCTAAACTCAATAATCTTCAAGCCA 244
Query 483 TCGGTACAATCGCCACCGCTCTAGCTGACTACATGCGCGTCATTGTTCAAGATGTACCTG 542
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 245 TCGGTACAATCGCCACCGCTCAAGCGGACTATATGCGCGTCATTGTTCAAGATGTACCTG 304
Query 543 AGAGTGATAATGGAGAGGATGATAAGATTGGCGTTGAGTTGCTTTGTGTGGTGAGAAAGT 602
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AGAGTGATTATGGAGATGATGATAAGATTGGCGTTGAGTTGCTTTGTGTGGTGAGAAAGT 364
Query 603 TACTGAAGAAGATAGGTAGGACTGTTCTTGTTGGTGATAAAGTTCTCGTTGATAAAGTTG 662
| |||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 365 TGTTGAACAAGATTGGTAGGACTGTTCTTGTTGGTGATAAAGTTCTTGTGGATAAAGTTG 424
Query 663 ATTGGGTTGATCGGAGAGCTAAGATTATCAATGTGTTTGATCGAGTCTCGGAGGTTTTGG 722
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 425 ATTGGATTGATCGGAGAGCTAAGATCATCAATGTGTTTGATCGAGTCTCGGAGATTTTGG 484
Query 723 ATCCACCGGTTGCGAATGTTGATCACTTAGTGATTCTGTTTTCTCTTGATCAACCTAAGA 782
| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 485 AGCCACCGGTTGCGAATGTTGATCACTTACTGATTCTCTTCTCTCTTGATCAACCTAAGA 544
Query 783 TTGATCCATTTACACTTACTAGGTTCTTGGTGGAAGCTGAATCTATTGGAATTCGAATCA 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 545 TTGATCCATTTACACTTACTAGGTTCTTGGTGGAAGCTGAATCTATTGGAATTCGAGTCA 604
Query 843 CAGTTGCTTTGAACAAATGTGAACTCGTCACTCAAGAGGAAGTGGAATCTTGGAAGATAA 902
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 605 CAATTGCTTTGAACAAATGTGAACTCGTCACTCAAGAGGAAGTGGAATCTTGGAAGGTAA 664
Query 903 GATTGCGTAGTTGGAACTATGAACCATTGTTCTGTAGTGTGGGAACTAAAGTCGGAATTG 962
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||
Sbjct 665 GATTGCGTAGTTGGAACTATGAACCATTGTTTTGCAGTGTGGGAACAAAAGTCGGACTTG 724
Query 963 ATGAGATTGCGTTTAACCTGCGAAATCAGACTTCTGTCATTGTTGGACCTAGTGGTGTTG 1022
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 725 ATGAGATTGCGTTTAACCTGCGAAATCAGACTTCTGTGGTTGTTGGACCTAGTGGTGTTG 784
Query 1023 GAAAGTCCAGCTTAATCAATATATTGAGAAGTAGCTACGGTGGTGACATTAAACACGAAG 1082
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 785 GAAAGTCGAGCTTAATCAATATATTGAGAAGTAGCTATGGTGGTGCCATTAAACACGAAG 844
Query 1083 AAGTGTTTAAGCCTG 1097
|||||||||||||||
Sbjct 845 AAGTGTTTAAGCCTG 859
Score = 736 bits (398), Expect = 0.0
Identities = 452/479 (94%), Gaps = 0/479 (0%)
Strand=Plus/Plus
Query 1097 GCCAAAACAAGAAGAATaaaaaaaaGTGGTTTGAAGATCAGAGTGTAGGGGAAGTTTCAC 1156
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 893 GCCAAAACAAGAAGAATAAAAAGAAGTGGTTTGAAGATCAGAGTGTAGGCCAAGTTTCAC 952
Query 1157 ATAGAAATGGAAGAGGTAAACATACAACCCGAAATGTAACGCTACTTCCTCTTTGTGGAG 1216
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 953 ATAGAAATGGATTAGGTAAACATACAACCCGAAATGTAACGCTACTTCCGCTTTGTGGAG 1012
Query 1217 GTGGATACCTTGCTGATACTCCTGGCTTTAACAAGCATAAGTTGCTGAAAGTAACAAAGC 1276
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GTGGATATCTTGCTGATACTCCTGGCTTTAACAAGCATAAGTTGCTGAAAGTAACAAAGC 1072
Query 1277 AAAAACTTCCCTTGTGTTTTCCTGAGATACGGAAAATGGTCGAGGGAGGAAAATGTAAAT 1336
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1073 AAAAACTTCCCCTGTGTTTTCCTGAGATACGGAAAATGGTTGAGGGAGGAAAATGTGAAT 1132
Query 1337 ACAAGGATTGCTCGCATTTAGGGGTACAAGGCTGTGCTGTGACAGGTGGTTGGGAAAGGT 1396
||| |||||||||||||||||||| | || |||||||||||||||| |||||||||||
Sbjct 1133 TCAAAAATTGCTCGCATTTAGGGGTATATGGATGTGCTGTGACAGGTGATTGGGAAAGGT 1192
Query 1397 ATGATTACTTTTTACAACTGCTTGATGAGATCAAAATCGATGAGGAGTGTCAACTTAAGA 1456
|| |||||| || ||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 1193 ATCATTACTACTTGCAACTGCTTGAAGAGATCAGGATCGATGAGGAGTCTCAACTTAAGA 1252
Query 1457 AGTATGGAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAAC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGTATGGAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAAC 1312
Query 1517 AAGCTAAACCACGGATAGATCCCAAGAAGTATAGGAGAGAATCGAGGAAGACGATGAAA 1575
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1313 AAGCGAAACCACGGATAGATCCCAAGAAGTATAGGAGAGAGTCGAGGAAGACGATGAAA 1371
> Ahg925994 jgi|Araly1|925994|scaffold_201555.1
Length=1333
Score = 728 bits (394), Expect = 0.0
Identities = 894/1127 (79%), Gaps = 67/1127 (6%)
Strand=Plus/Plus
Query 475 TCAAGCCATCGGTACAATCGCCACCGCTCTAGCTG-ACTACATGCGCGTCATTGTTCAAG 533
|||||| |||||||| | ||||| |||| ||| | ||| |||||||||||||||||||
Sbjct 110 TCAAGCTATCGGTACTGTTGCCACAGCTCAAGC-GAACTTTATGCGCGTCATTGTTCAAG 168
Query 534 ATGTACCTGAG---AGTG-ATAAT-G-GA-GAGGA-T-G-ATAAGATTGGCGTTGAGTTG 583
||||| || || ||| | | | | || || || | | ||||| ||| |||||||||
Sbjct 169 ATGTAGCT-AGTTCTGTGAAGAGTGGTGATGATGATTCGTCTAAGACTGGTGTTGAGTTG 227
Query 584 CTTTGTGTGGTGAGAAAG-T-TACTGAAGAAGATAGGTAGGACTGTTCTT-GTTGGTGAT 640
|||||||| ||||| || | | ||||||||||| | |||| ||| || ||||| |||
Sbjct 228 CTTTGTGTAGTGAG--AGCTGTGTTGAAGAAGATACGAAGGAGAGTT-TTGGTTGGAGAT 284
Query 641 AAAGTTCTCGTT-GATAAAGTTGATTGGGTTGATCGGAGAGCTAA-GATT-ATCAATGTG 697
|| ||||| ||| ||| | |||||||||||||| | |||| || |||| | ||||||
Sbjct 285 AAGGTTCTTGTTGGATCTA-TTGATTGGGTTGATAGAAGAG-GAATGATTGA-GAATGTG 341
Query 698 TTTGATCG-AGTCTCGGAGGTTTTGGATCCACCGGTTGCGAATGTTGATCACTTAG-TGA 755
||| |||| | ||||||| |||||||||||||||||||||| |||||||| || | ||
Sbjct 342 TTTCATCGCCG-CTCGGAGATTTTGGATCCACCGGTTGCGAACGTTGATCA-TTTGCTGG 399
Query 756 TTCTGTTTTCTC-TT-GATCAACCTAAGA-TTGATCCATTTACACTTACTAGGTTCTTGG 812
||| ||||||| || |||||||| || | | || | || || || |||||||||||||
Sbjct 400 TTC--TTTTCTCTTTGGATCAACCGAA-ACTGGAGCTGTTCACTCTCACTAGGTTCTTGG 456
Query 813 TGGAAGCTGAATCTATTGGAATTCGAATCACAGTTGCTTTGAACAAATGTGAACTCGTCA 872
||||||||||||||| | |||||| | | ||| |||||||||| ||| ||||||| | |
Sbjct 457 TGGAAGCTGAATCTACTCGAATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTA 516
Query 873 CTC-AAGAGGAAGTGGAATCTTGGAAGATAAGATTGCGTAGTTGGAACTATGAACCATTG 931
| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 517 -GCGAAGAGGAATTGGAATCTTGGAAGATAAGATTGCGTGGATGGAACTATGAACCATTG 575
Query 932 TTCTGTAGTGTGGGAACTAAAGTCGGAATTGATGAGATTGCGTTTAACCTGCGAAATCAG 991
|| ||||||||||||||||||| |||| |||||| ||||||||| ||||| ||||||
Sbjct 576 TTTTGTAGTGTGGGAACTAAAGACGGACTTGATGCCATTGCGTTTGTTCTGCGGAATCAG 635
Query 992 ACTTCTGTCATTGTTGGACCTAGTGGTGTTGGAAAGTCCAGCTTAATCAATATATTGAGA 1051
|||||||| |||||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 636 ACTTCTGTGATTGTTGGACCTAGTGGTGTAGGAAAGTCGAGCTTAATCAACATTTTGAGG 695
Query 1052 AGTAGCTACGGTGGTGACAT--TA-AACACGAAGAAGTG-TTTAAGCCTGCCAAAACAAG 1107
|||| | | ||||||| | | || | || ||| || ||| ||||| | | |
Sbjct 696 AGTAACCATGGTGGTGGTGTGGTGGAAGATGA-GAATTGGTTTGAGCCT---ATGTTA-G 750
Query 1108 AAGAATaaaaaaaaGTGGTTTGAAGATCAGAGTGTAGGGGAAGTTTC-ACATAGAAATGG 1166
| ||| || ||||||||| |||||| | ||||||||||| || | ||||| |||
Sbjct 751 --G--TAATAA---GTGGTTTGATGATCAGCGAGTAGGGGAAGTGTCTAG-TAGAAGTGG 802
Query 1167 AAGAGGTAAACATACAACCCGAAATGTAACGCTACTTCCTCTTTGTGGAGGTGGATACCT 1226
|||||||||||||||| ||||||||| ||||||| || ||| || |||||| |||||
Sbjct 803 TCGAGGTAAACATACAACACGAAATGTATCGCTACTGCCGATTTCTGAAGGTGGTTACCT 862
Query 1227 TGCTGATACTCCTGGCTTTAACAAGCATAAGTT-GCTGAAAGTAACAAAGCAAAAACTTC 1285
|||||||| |||||||||||| ||| || ||| ||||||||||||||||||| ||||
Sbjct 863 CGCTGATACACCTGGCTTTAACCAGCCTA-GTTTGCTGAAAGTAACAAAGCAATCACTTG 921
Query 1286 C-CTTGTGTTTTCCTGAGATACGGAAAATGGTCGAGGGAGGAAAATGTAAATACA-AGGA 1343
| | || ||||||||||||||||| ||| | ||||| | ||||||| || || || |
Sbjct 922 CACAC-TGCTTTCCTGAGATACGGAACATGATTGAGGGCGAAAAATGTGGATTCAGAG-A 979
Query 1344 TTGCTCGCAT-TTAGGGGTACAAGGCTGTGCTGTGACAGGTGGTTGGGAAAGGTATGATT 1402
||||| |||| || |||| || ||| |||| ||||| ||||| ||||||||||||| ||
Sbjct 980 TTGCTTGCATATT-GGGGAACCAGGATGTGTTGTGAAAGGTGATTGGGAAAGGTATCCTT 1038
Query 1403 ACTTTTTACAACTGCTTGATGAGATCAAAATCGATG-AGGAGTGTCAACTTAAGAAGTAT 1461
||| |||||| ||||||||||||||| |||| | | | |||| ||| |||| || | |
Sbjct 1039 ACTACTTACAATTGCTTGATGAGATCAGAATC-AGGGAAGAGTTTCAGCTTAGGACTTTT 1097
Query 1462 GGAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAACAAGCT 1521
|||||||||| ||||| || |||||| | | | ||||||| | ||||||| |||| |||
Sbjct 1098 GGAACCAAAAAGGAAGATGATGTTAGGTACAAGGTGGGAGACATGGGTGTGAAACATGCT 1157
Query 1522 AAACCACGGATAGATCCC-AAGAAGTATAGGAGAGAATCGAGGAAGA 1567
|||| ||| || || || |||||| |||||||||| || |||||||
Sbjct 1158 GAACCGCGGCTA-ATGCCTAAGAAGCATAGGAGAGAGTCAAGGAAGA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5