BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67480.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925998 jgi|Araly1|925998|scaffold_201559.1 1784 0.0
> Ahg925998 jgi|Araly1|925998|scaffold_201559.1
Length=1171
Score = 1784 bits (966), Expect = 0.0
Identities = 1105/1173 (94%), Gaps = 5/1173 (0%)
Strand=Plus/Plus
Query 517 TTCAAAAGATTGGTCTAAAGATGCAAGCTTTTGCTTTAAGTGGGAAGAAAAGGATTGTGA 576
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TTCAAAAGATTGGTCGAAAGATGCAAGCGTTTGCTTTAAGTGGGAAGAAAAGGATTGTGA 60
Query 577 ATCACGGCATGTGTTTTTCCAAAGGAAATCTTGATCTCGGTTCACGCTTGTCTGAGAATT 636
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATCACGGCATGTGTTTCTCAAAAGGAAATCTTGATCTCGGTTCACGGTTGTCTGAGAATT 120
Query 637 TTATGGATGATCCTTTGATCCCGGGATTGCCTGATGATGTCGCTAAGCAGTGTC-TAGCG 695
|||||||||||||||||||||||||||||||||||||||| || ||||| || | | ||
Sbjct 121 TTATGGATGATCCTTTGATCCCGGGATTGCCTGATGATGTAGCGAAGCAATG-CTTGGCT 179
Query 696 CTTGTTCCGCGTGCTAGGTTCCCATCCATGGGAAGTGTATGCAAGAAATGGAGGTTTGTT 755
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 180 CTTGTTCCGCGTGCTAGGTTCCCTTCAATGGGAAGTGTATGCAAGAAATGGAGGTTTGTT 239
Query 756 GTCCAGAGCAAAGAGTTTATTACTGTGAGAAGACTCGCTGGTATGCTTGAGGAGTGGCTT 815
|||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||
Sbjct 240 GTCCAGAGCAAAGAGTTTATCACCGTTAGAAGACTCGCCGGTATGCTTGAGGAGTGGCTT 299
Query 816 TATGTCTTAACGATGAATGCTGGTGGGAAAGATAACCGA-TGGGAGGTGATGGACTGTTT 874
||||||||||||| |||||||||||||||||| | || | ||||||||||||||||||||
Sbjct 300 TATGTCTTAACGACGAATGCTGGTGGGAAAGAGAGCC-AGTGGGAGGTGATGGACTGTTT 358
Query 875 GGGACAGAAGCTATCATCTCTTCCACCGATGCCTGGTCCTGCAAAAACAGGGTTTAAGGT 934
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 359 GGGACAGAAGCTATCATCTCTTCCACCAATGCCTGGTCCTGAAAAAACAGGGTTTAAGGT 418
Query 935 TGTTGTGGTTGATGGGAAACTTCTTGTCATTGCTGGTTGTTGTATGATCAACGGTTCGCT 994
||||||||||||||||||||||||||| || |||||||||| || |||||||||||| ||
Sbjct 419 TGTTGTGGTTGATGGGAAACTTCTTGTTATCGCTGGTTGTTCTAAGATCAACGGTTCTCT 478
Query 995 TGTTGCATCTGCTGATGTTTATCAGTATGATACATGCCTCAATAGCTGGAGTAGACTAGC 1054
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 TGTTGCATCTGCTGATGTTTATCAGTATGATACTTGCCTCAATAGCTGGAGTAGACTAGC 538
Query 1055 AGACCTGGAGGTAGCTCGGTATGATTTCGCTTGTGCTGAGGTGAACGGGCATGTTTATGT 1114
||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct 539 AGACCTGGAGGTAGCTCGGTATGATTTCGCTTGTGCTGAGGTGAATGGACTTATTTATGT 598
Query 1115 TGTGGGAGGTCATGGGGTAGATGGTGAGAGTCTGTCAAGTGCAGAGGTGTATGATCCTGA 1174
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 GGTGGGAGGTCACGGGGTAGATGGCGAGAGTCTGTCAAGTGCAGAGGTGTATGATCCTGA 658
Query 1175 GACGTGTACATGGACTTTCATAGAGTCTTTAAGGCGTCCGAGGTGGGGTTGTTTCGCTAG 1234
||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 659 TACGGGTACATGGACTTTCATAGAGTCTCTGAGGCGTCCGAGGTGGGGCTGTTTCGCTAG 718
Query 1235 CGCCTTCAACGGGAAGCTATATGTGATGGGTGGGAGATCCAACTTCACTATTGGAAACTC 1294
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 719 CGGCTTCAACGGGAAGCTATATGTGATGGGTGGGAGATCCAATTTTACTATTGGAAACTC 778
Query 1295 AAAACTTCTTGATGTGTACAACACTCAATGTGGCTCCTGGCATGGTAGCAAAAACGGTTT 1354
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 779 AAAACTTCTTGATGTGTACAACACTCAATGCGGCTCCTGGCATGGAAGCAAAAACGGTTT 838
Query 1355 AACGATGGTCACAGCTCATGTTGAAGTAGGGAAAAAGCTGTTCTGTATCGACTGGAAGAA 1414
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 AACCATGGTCACAGCTCATGTTGAAGTAGGGAAAAAGCTGTTCTGTATCGATTGGAAGAA 898
Query 1415 CCACCGGAAGATGTCGGTGTTCAATGCGGAAGACGAAACCTGGGAAGTGGTGGCTCTTCC 1474
||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 CCAGAGAAAGATGTCGGTGTTCAATGCGGAAGACGAAACCTGGGAAGTGGTGTCTCTTCC 958
Query 1475 GCTATCAGGAAGCTCGAGGGCCGGGTTTCAGTTTGGTAAGCTGAGTGGGAAGCTTTTGCT 1534
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 959 GCTGTCAGGAAGCTCGAGGGCCGGGTTTCAGTTTGGTAAGCTGAGTGGGAAGCTTCTACT 1018
Query 1535 ATTCTCGTCTCAGGAAGAAACCGGTCAATGTACTTTACTGTATGACCCGGATGCTTCACC 1594
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1019 ATTTTCGTCTCAGGAAGAAACCGGGCAATGCACTTTACTGTATGACCCGGATGCTTCACC 1078
Query 1595 AGGCACACAGTGGAAAACGTCTGAGATCAAACTCTCTGGTTCTTGCGTATGCAGTGTCAC 1654
||| |||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1079 AGGGACACAGTGGAAAACATCTGAGATAAAACTGTCTGGTTCTTGCGTATGCAGCGTCAC 1138
Query 1655 AATCACAGCCTGATTGATACC-ATTGTGTTGTT 1686
|||||||||||||||||| | |||||||||||
Sbjct 1139 AATCACAGCCTGATTGATTGCTATTGTGTTGTT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5