BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67490.1
Length=2756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475845 jgi|Araly1|475845|fgenesh2_kg.2__975__AT1G67490.1 3925 0.0
Ahg921754 jgi|Araly1|921754|scaffold_103035.1 1386 0.0
> Ahg475845 jgi|Araly1|475845|fgenesh2_kg.2__975__AT1G67490.1
Length=2657
Score = 3925 bits (2125), Expect = 0.0
Identities = 2447/2597 (94%), Gaps = 43/2597 (2%)
Strand=Plus/Plus
Query 10 CCGACCATGACCGGAGCTAGCCGTCGGAGCGCGCGTGGTCGAATCAAATCATCATCATTA 69
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CCGACCATGACCGGAGCAAGCCGTCGGAGCGCGCGTGGTCGAATCAAATCATCATCA-T- 58
Query 70 TCTCCCGGCTCCGATGAAGGAA--G---CG----CTTATCCTCCGAGTATCCGCCGCGGC 120
| ||||||| ||||||||||| | || ||||||||||||||||||||||||||
Sbjct 59 T-TCCCGGCGGCGATGAAGGAAGCGATTCGCTTCCTTATCCTCCGAGTATCCGCCGCGGC 117
Query 121 AAAGGCAAGGAACTTGTATCGATCGGTGCTTTCAAGACGAATCTCAAGATATTGGTTGGG 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 118 AAAGGCAAAGAACTTGTGTCGATCGGTGCTTTCAAGACGAATCTCAAGATACTGATTGGG 177
Query 181 TTAATCATATTAGGGATTATAGTAATCTACTTCGTAATCAATCGGCTAGTTCGTCACGGG 240
||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||
Sbjct 178 TTAATCATATTAGGGATTATAGTCATCTACTTCGTCATCAATCGACTTGTTCGTCACGGA 237
Query 241 TTGTTGTTTGATGAGTCCCAGAAGCCTAGGGTTATCACTCCTTTTCCTGCTCCGAAAGTC 300
||||||| ||||||||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct 238 TTGTTGTATGATGAGTCTCAAAAGCCTAGGGTTATCACTCCTTTTCCTGCTCCCAAACTC 297
Query 301 ATGGATTTGTCAATGTTTCAGGGCGAGCACAAAGAGAGCTTATACTGGGGAACTTATCGT 360
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 298 ATGAATTTGTCAATGTTTCAGGGAGAGCACAAAGAGAGCTTGTACTGGGGAACTTATCGT 357
Query 361 CCTCATGTTTATTTTGGAGTTCGAGCTAGAACTCCATTGTCCTTGGTAGCTGGCTTGATG 420
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 358 CCTCATGTTTATTTTGGAGTTCGTGCGAGAACTCCATTGTCTTTGGTAGCTGGCTTGATG 417
Query 421 TGGCTTGGTGTCAAAGATGAGATGTATGTTATGCGGCATTTCTGTGAAAACTCTGATGAT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGCTTGGTGTCAAAGACGAGATGTATGTTATGCGGCATTTCTGTGAAAACTCTGATGAT 477
Query 481 TTAAGTACATTTGGCTGGAGAGAACATAATGGACGGGATTATGGTCGGCAAGAGCTGGTT 540
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 478 TTAAGTACATTTGGATGGAGAGAACATAATGGACGGGATTTTGGGCGGCAAGAGCTGGTT 537
Query 541 GAAAACGATATGGTAATAGAGACGAGTTTTGTGAAGTCCAAGGGAGACGGCCTTGGTTAT 600
|| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 538 GAGAACGATATGGTATTAGAGACGAGTTTTGTCAAGTCGAAGGGAGACGGCCTTGGTTAT 597
Query 601 GGTGGGGATTGGGCAGTTCGGATTGATGTAAAAAATAAAGGGTTGAATGATGATGTGAAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTGGGGATTGGGCAGTTCGGATTGATGTAAAAAATAAAGGGTTGAATGATGATGTGAAG 657
Query 661 AGAAGTGCACATCTCTTCTTTTATTTAGCTGATGAAGGTGGCAATGTTTTAAATTTAGGC 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAAGTGCCCATCTCTTCTTTTATTTAGCTGATGAAGGTGGCAATGTTTTAAATTTAGGC 717
Query 721 CAAGATGGTTTAGATTTCCAAGGGAGCTCTCTCCTGGTTTCGGGGTCACGTGAAGATGTA 780
|||||| ||| ||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 718 CAAGATAATTTGGATTTTCAAGGGAGCTCACTCCTGGTTTCGGGTTCACGTGAAGATGTA 777
Query 781 GGAGACTGGCAGATACACTTAAAATCACAGAATCAGCTCGAGACACATTATTCCGGTTTC 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGAGATTGGCAGATACACTTAAAATCACAGAATCAGCTCGAGACACATTATTCCGGTTTC 837
Query 841 AAGACGCCTCACATATATAATTTGTCTGATCTAGTTCAGCAAAATCTTGCTCTGCAGGCA 900
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 838 AAGACGCCTCACATATATAATCTGTCTGATCTAGTTCAGCAAAATCTCGCTCTGCAGGCA 897
Query 901 AGGAAGTTTGGACGACTTCAGCTCTCTGACACATCAGAGGATTCTTCTAACATTTACATC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGGAAGTTTGGACGACTTCAGCTCTCTGACACATCAGAGGATTCTTCTAACATTTACATC 957
Query 961 TTTCAGATTTCTGGGAGGCTACCATTTACGATTGATATTCCCTTCATCTCCGGGATCAAA 1020
|||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||
Sbjct 958 TTTCAGATTTCTGGGAGGCTGCCATTTACAATTGATATACCCTTCGTCTCCGGGATCAAA 1017
Query 1021 GGAGAAAGTTCAAATGTGGAAAAGCGTTTAACAAGTCTCACAGGTTTGCCACTCTCTGAT 1080
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1018 GGAGAAAGTTCAAACGTGGAAAAGCGGTTAACAAGTCTCACAGGTTCGCCACTCTCTGAT 1077
Query 1081 CTACTTAAAAAGAAACATCAAGAATTTGATGCAAAGTTTAATGAATGCTTCAAGCTTTCT 1140
|||||||||||||||| | |||| |||||| |||||||| | ||||||||||| ||||||
Sbjct 1078 CTACTTAAAAAGAAACGTAAAGAGTTTGATACAAAGTTTGAGGAATGCTTCAACCTTTCT 1137
Query 1141 GAAAAGCATGATTCAGAAACATTGGGGGTTGG-AAGGACTGCAATTGCAAACATGCTTGG 1199
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1138 GAAAAGCATGATTCAGAAACATTGGGGGTTGGCAA-GACTGCAATTGCAAACATGCTTGG 1196
Query 1200 GGGCATTGGTTACTTCTATGGCCAATCAAAAATTTATGTTCCTAAAAGCACTCAGCCTGG 1259
|||||||||||||||||||||||||| |||| | | ||| |
Sbjct 1197 TGGCATTGGTTACTTCTATGGCCAATC-AAAA---A------T--------TCA---T-- 1233
Query 1260 AAGTCGGGATAATTTCTTGCTGTATTGGCCAGCCGAGCTGTACACAGCTGTTCCAAGCCG 1319
|| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1234 AA-TCGGAATAATTTCTTGCTGTATTGGCCAACTGAGCTGTACACAGCTGTTCCAAGCCG 1292
Query 1320 ACCtttttttCCTAGGGGGTTTTTGTGGGACGAAGGTTTCCATCAATTGTTGATCTGGCG 1379
|| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1293 GCCCTTTTTTCCTAGGGGTTTTTTGTGGGACGAAGGTTTCCATCAATTGTTAATCTGGCG 1352
Query 1380 GTGGGATATTCGTATAACCTTGGATATCGTTGGACACTGGTTAGACCTATTGAACATAGA 1439
|||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 1353 CTGGGATTTTCGTATAACCTTGAATATCGTTGGGCACTGGTTAGACCTATTAAACATAGA 1412
Query 1440 TGGATGGATTCCACGTGAGCAAATTTTGGGTGCTGAAGCTTTGAGTAAGGTTCCAGAGGA 1499
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1413 TGGATGGATTCCACGTGAGCAAATTTTGGGTGCTGAAGCTCTGAGTAAGGTTCCAGAGGA 1472
Query 1500 ATTCGTAGTTCAATACCCGAGTAATGGCAATCCACCAACTCTGTTTTTGGTGATACGTGA 1559
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1473 ATTCGTAGTTCAATACCCGAGTAATGGCAATCCACCAACACTTTTTTTGGTGATACGCGA 1532
Query 1560 TCTGATTGATGCTATAAGGATGGAAAAGTTTGTCGCATCAGAAAAGGATGAAGTATTGTC 1619
|||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1533 TCTGATAGATGCTATAAGGATGGAAAAGTTTATTGCATCAGAAAGGGATGAAGTATTGTC 1592
Query 1620 ATTCCTTGAGCGAGCTTCTGTACGCTTAGATGCTTGGTTTCAGTGGTTTAATACTTCCCA 1679
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1593 ATTCCTTGAGCGGGCTTCTGTACGGTTAGATGCTTGGTTTCAGTGGTTTAATACTTCCCA 1652
Query 1680 GAAAGGCAAGGAGATCGGAAGCTACTTTTGGCATGGCAGAGACAACACAACAACTCA-AG 1738
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1653 GAAAGGCAAGGAGATCGGAAGCTACTTTTGGCATGGCAGAGACAACATAACAACT-AGAG 1711
Query 1739 AACTTAACCCTAAGACGCTTTCGTCGGGGCTGGATGATTATCCCCGGGCTTCGCACCCTA 1798
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1712 AACTTAACCCTAAGACGCTTTCGTCGGGGCTGGATGATTATCCCCGGGCTTCACACCCAA 1771
Query 1799 GTGAAGATGAGCGACATGTTGATCTTAGATGCTGGATGTACCTTGCTGCAGATTGCATGC 1858
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GTGAAGATGAGAGACATGTTGATCTTAGATGCTGGATGTACCTTGCTGCAGATTGCATGC 1831
Query 1859 ATTCCATCACAGAGCTTTTAGGAAAAGAAGACAAACTTTCAAAGGAGAATTACAATTCAA 1918
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1832 ATTCCATCACAGAGCTTTTAGGAAAAAAAGATAAACTTTCAAAGGAGGATTACAATTCAA 1891
Query 1919 CTGTCAAGCTGCTTTCAAATTTCAATCTTCTGAATCAGATGCACTATGATAGTGACTATG 1978
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1892 CTGCCAAGCTGCTTTCAAATTTCAATCTTCTGAATCAGATGCACTACGATAGTGACCATG 1951
Query 1979 GGGCTTACTTTGACTTTGGCAATCATACAGAAAAAGTTAAGTTGATATGGAAAGAGGTAA 2038
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GGGCTTACTTTGACTTTGGTAATCATACAGAAAAAGTTAAGTTGATATGGAAAGAGGTAA 2011
Query 2039 TTCAAGAAAATGGTCAATTATCTCGACAACTTGTAAGGAAGACTTTTGGGAAGCCAAAGC 2098
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2012 TTCAAGAAAATGGTCAATTATCTCGACAGCTTTTAAGGAAGACTTTTGGGAAGCCAAAGC 2071
Query 2099 TAAAATTGGTTCCTCACTTGGGTTACGTCAGCTTCTTTCCCTTCATGTCTAGAATCATCC 2158
||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2072 TAAAAATGGTTCCTCACGTGGGTTATGTCAGCTTCTTTCCCTTCATGTCTAGAATCATCC 2131
Query 2159 CACCTGATTCTCCAATTCTCGAGAAACAGCTCGATCTCATTTCAAATAGGAGCATCTTAT 2218
|||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2132 CACCTGATTCTCCAATCCTCGAGAAACAGCTTGATATCATTTCAAATAGGAGCATCTTAT 2191
Query 2219 GGAGTGACTATGGACTAGTTTCGCTTGCCAAAACCAGTTCTATGTATATGAAACGTAACA 2278
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 GGAGTGACTACGGACTAGTTTCGCTTGCCAAAACCAGTTCTATGTATATGAAACGTAACA 2251
Query 2279 CTGAGCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTC 2338
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2252 CTGAGCATGATGCACCATACTGGAGAGGTCCTATCTGGATGAACATGAACTACATGATTC 2311
Query 2339 TTTCTTCTCTTTACCATTACTCTATAGTGGATGGACCGTATAGAGAAAAGTCGAA-AGCA 2397
||||||||||| |||||||||||||||||||||| || |||||||||||||| || ||||
Sbjct 2312 TTTCTTCTCTTCACCATTACTCTATAGTGGATGGGCCATATAGAGAAAAGTC-AAGAGCA 2370
Query 2398 ATTTACACGGAACTAAGGAGCAATTTGATAAGGAACGTGGTTAGAAACTATTACGAGACG 2457
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2371 ATATACACGGAACTAAGGAGCAACTTGATAAGGAACGTGGTTAGAAACTATTACGAGACA 2430
Query 2458 GGGTACATCTGGGAACAATATGATCAAGTTAAGGGAACAGGCAAAGGCACGCGTCTCTTC 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 GGGTACATCTGGGAACAATATGATCAAGTTAAGGGAACAGGCAAAGGCACGCGTCTCTTC 2490
Query 2518 ACCGGCTGGTCTGCGCTTACCTTGTTAATTATGTCAGAAGATTATCCTATTTTTTAGATT 2577
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2491 ACCGGCTGGTCTGCGCTTACCTTGTTGATTATGTCCGAAGATTATCCTATTTTTTAGATT 2550
Query 2578 AGAACCTCTTCGG-GAA 2593
||||||||||||| |||
Sbjct 2551 AGAACCTCTTCGGAGAA 2567
> Ahg921754 jgi|Araly1|921754|scaffold_103035.1
Length=2390
Score = 1386 bits (750), Expect = 0.0
Identities = 1250/1488 (84%), Gaps = 47/1488 (3%)
Strand=Plus/Plus
Query 1101 AGAATTTGATGCAAAGTTTAATGAATGCTTCAAGCTTTCTGAAAAGCATGATTCAGAAAC 1160
|||||||||||||||||| || ||||||||||| ||||||||||||| |||| | |||||
Sbjct 885 AGAATTTGATGCAAAGTTCAAGGAATGCTTCAACCTTTCTGAAAAGCTTGATCCTGAAAC 944
Query 1161 ATTGGGGGTTGG-AAGGACTGCAATTGCAAACATGCTTGGGGGCATTGGTTACTTCTATG 1219
|| | |||||| || | ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 945 TTTCGTGGTTGGTAAAG-CTGCAATTGGGAACATGCTTGGAGGCATTGGTTACTTCTATG 1003
Query 1220 GCCAATCAAAAATTTATGTTCCTAAAAGCACTCAGCCTGGAAGTCG-GGATAATTTCTTG 1278
|||||||||||||| ||||||||||||| |||| | || |||| | |||| ||||||||
Sbjct 1004 GCCAATCAAAAATTCATGTTCCTAAAAGTACTCTGGCTAAAAGT-GAGGATGATTTCTTG 1062
Query 1279 CTGTATTGGCCAGCCGAGCTGTACACAGCTGTTCCAAGCCGACCtttttttCCTAGGGGG 1338
|| ||||||||||| ||||| |||||||| ||||||||||| || | |||||||| ||
Sbjct 1063 CTATATTGGCCAGCTGAGCTATACACAGCAGTTCCAAGCCGGCCCGTGTTTCCTAGAGGA 1122
Query 1339 TTTTTGTGGGACGAAGGTTTCCATCAATTGTTGATCTGGCGGTGGGATATTCGTATAACC 1398
||||||||||| ||||| ||||||||||||||||||||||| |||||| | | |||||||
Sbjct 1123 TTTTTGTGGGATGAAGGCTTCCATCAATTGTTGATCTGGCGCTGGGATGTCCATATAACC 1182
Query 1399 TTGGATATCGTTGGACACTGGTTAGACCTATTGAACATAGATGGATGGATTCCACGTGAG 1458
|| || ||||||||| |||||||||| ||| |||| |||||||||||||||||||| |||
Sbjct 1183 TTAGAAATCGTTGGAAACTGGTTAGATCTAATGAATATAGATGGATGGATTCCACGGGAG 1242
Query 1459 CAAATTTTGGGTGCTGAAGCT-TTGAGTAAGGTTCCAGAGGAATTCGTAGTTCAATACCC 1517
||||||||||| ||||||||| || |||||| ||||| || | | ||| | ||| | |||
Sbjct 1243 CAAATTTTGGGAGCTGAAGCTCTT-AGTAAGATTCCAAAGCAGTACGTTGCTCAGTTCCC 1301
Query 1518 GAGTAATGGCAATCCACCAACTCTGTTTTTGGTGATACGTGATCTGATTGATGCTATA-A 1576
||||||||||||||||| || || ||||||||||||| |||||||| ||| ||| |
Sbjct 1302 AAGTAATGGCAATCCACCTACACTACTTTTGGTGATACGCGATCTGATCAATGGGATACA 1361
Query 1577 GGATGGA-AAAGTTTGTCGC-A-TCAGAAAAG-GATGAAGTATTGTCATTCCTTGAGCGA 1632
|| || ||| || | || | ||| |||| |||||||| |||||||| ||||| ||
Sbjct 1362 -GACAGAGAAA--TT-TAGCAAGGCAG-AAAGAGATGAAGTCTTGTCATTTCTTGACCGG 1416
Query 1633 GCTTCTGTAC-GCTTAGATGCTTGGTTTCAGTGGTTTAATACTTCCCAGAA-AGGCAAGG 1690
|||| ||||| || ||||||| |||||| ||||||| ||||||||||| || ||| ||||
Sbjct 1417 GCTTTTGTACGGC-TAGATGCATGGTTTAAGTGGTTCAATACTTCCCA-AATAGGAAAGG 1474
Query 1691 AGATCGGAAGCTACTTTTGGCATGGCAGAGACAACACAACAACTCAA-GAACTTAACCCT 1749
||| ||||| |||| |||||||||||||||||| | ||||| | || ||||| ||||||
Sbjct 1475 AGAAGGGAAGTTACTATTGGCATGGCAGAGACAATATAACAAAT-AAGGAACTAAACCCT 1533
Query 1750 AAGACGCTTTCGTCGGGGCTGGATGATTATCCCCGGGCTTCGCACCCTAGTGAAGATGAG 1809
|| | ||||| ||||| | ||||||||||| |||||||| || || ||||||||||||
Sbjct 1534 CAGTCTCTTTCCTCGGGTTTTGATGATTATCCTCGGGCTTCACATCCAAGTGAAGATGAG 1593
Query 1810 CGACATGTTGATCTTAGATGCTGGATGTACCTTGCTGCAGATTGCATGCATTCCAT-CAC 1868
| |||||||| || ||||| |||||||| ||||| |||||||| ||| | ||||| ||
Sbjct 1594 AGGCATGTTGACCTCAGATGTTGGATGTATCTTGCAGCAGATTGTATGAACTCCATCCA- 1652
Query 1869 AGAGCTTT-T-AGGAAAAGAAGACAAACTT-TCAAAGGAGAATTACAATTCAACTGTCAA 1925
|||| ||| | |||||| |||||| |||| | || |||| |||||| |||| || |||
Sbjct 1653 AGAG-TTTATGGGGAAAA-AAGACAGACTTGT-AACGGAGGATTACAGCTCAATTGCCAA 1709
Query 1926 GCTGCTTTCAAATTTCAATCTTCTGAATCAGATGCACTATGAT-AGTGACTATGGGGCTT 1984
|||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 1710 GCTGCTTTCAGATTTCAATCTTCTGAATCAGATGCACTATGACCAG-GACCATGGGGCTT 1768
Query 1985 ACTTTGACTTTGGCAATCATACAGAAAAAGTTAAGTTGATATGGAAAGAGGTAATT-CAA 2043
|| |||||||||| |||||||||||| ||||| ||| || |||||||| |||||| |||
Sbjct 1769 ACCTTGACTTTGGTAATCATACAGAAGAAGTTCGGTTAATCTGGAAAGAAGTAATTACAA 1828
Query 2044 GAAAATGGTCAATTATCTCGACAACTTGTAAGGAAGACTTTTGGGAAGCCAAAGCTAAAA 2103
|| |||| | ||||||||| | ||||||||| |||| |||||||||||| |||||| |
Sbjct 1829 -AAGATGGACGTTTATCTCGAGAGCTTGTAAGGGAGACATTTGGGAAGCCAGAGCTAAGA 1887
Query 2104 TTGGTTCCTCAC-TTGGGTTACGTCAGCTTCTTTCCCTTCATGTCTAGAATCATCCCACC 2162
|||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1888 TTGGTTCCTCACATTGG-TTACGTCAGCTTCTTTCCCTTCATGTTTAGAATCATCCCAGC 1946
Query 2163 TGATTCTCCAATTCTCGAGAAACAGCTCGATCTCATTTCAAATAGGAGCATCTTATGGAG 2222
|||||| |||| ||| | ||||||||||||||||||||||| |||| |||| |||||||
Sbjct 1947 GGATTCTTCAATACTCAACAAACAGCTCGATCTCATTTCAAACAGGAACATCGTATGGAG 2006
Query 2223 TGACTATGGACTAGTTTCGCTTGCCAAAACCAGTTCTATGTATATGAAACGTAACACTGA 2282
||||||||||||| |||| ||||| ||||| |||||| |||| ||||| |||||||||
Sbjct 2007 TGACTATGGACTACTTTCACTTGCAAAAACTAGTTCTTTGTACATGAAGTATAACACTGA 2066
Query 2283 GCATGATGCACCATACTGGAGAGGTCCTATATGGATGAACATGAACTACATGATTCTTTC 2342
|||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2067 GCATGAAGCACCATATTGGAGAGGTGCTATATGGATGAATATGAACTACATGATTCTTTC 2126
Query 2343 TTCTCTTTACCATTACTCTATAGTGGATGGACCGTATAG-AGAAAAGTCGA-AAGCAATT 2400
||| || |||||||||||| |||||||||||| || | || || | | | || ||||
Sbjct 2127 TTCCCTGCACCATTACTCTACAGTGGATGGACCATACCGCAGCAAGG-CAAGAA-CAATA 2184
Query 2401 TAC-ACGGAACTAAGGAGCAATTTGATAAGGAACGTGGTTAGAAACTATTACGAGACGGG 2459
||| | |||||||||||||||| | |||||||||||| ||||||||||| || |||| ||
Sbjct 2185 TACGA-GGAACTAAGGAGCAATCTAATAAGGAACGTGATTAGAAACTATGACCAGACTGG 2243
Query 2460 GTACATCTGGGAACAATATGATCAAGTTAAGGGAACAGGCA-AAGGCACGCGTCTCTTCA 2518
|| ||||||||||| ||||||||| || ||||| || | |||| | ||| ||||||
Sbjct 2244 ATATATCTGGGAACACTATGATCAAACAAAAGGAACTGG-AGAAGGTGCACGTGTCTTCA 2302
Query 2519 CCGGCTGGTCTGCGCTTA-CCTTGTTAATTATGTCAGAAGATTATCCT 2565
||||||||||||| |||| ||| ||||| ||||| ||||| || |||
Sbjct 2303 CCGGCTGGTCTGCACTTATCCTC-TTAATCATGTCCGAAGAATA-CCT 2348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103986368850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5