BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67510.1
Length=2160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908302 jgi|Araly1|908302|Al_scaffold_0002_1383 3188 0.0
> Ahg908302 jgi|Araly1|908302|Al_scaffold_0002_1383
Length=2157
Score = 3188 bits (1726), Expect = 0.0
Identities = 2023/2167 (93%), Gaps = 17/2167 (1%)
Strand=Plus/Plus
Query 1 ATGAtccttctctcacttcttctccatcttcttcttcatctcctcaacacttctccttct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCCTTCTCTCACTTCTTCTCCATCTTCTTCTTCATCTCCTCAACACTTCTCCTTCA 60
Query 61 ctttctctttccCCCGACGGTATCGCTTTACTCTCACTCAAATCCGCCGTCGATCACTCC 120
|||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTTTCTCTCTCTCCCGACGGTCTCGCTTTACTCTCACTCAAATCCGCCGTCGATCAATCT 120
Query 121 TCCTCCTCCGCTTTCTCCGATTGGAACGATAACGACACCGATCCTTGTCATTGGTCCGGA 180
||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 121 TCCTCCTCCGCTTTCTCCGATTGGAACGATAACGATTCCGATCCTTGTCGTTGGTCTGGA 180
Query 181 ATCTCCTGTATGAACATCTCAGACTCTTCTACCTCTCGCGTCGTTGGAATTTCCCTCGCC 240
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ATCTCTTGTATGAACATCTCAGACTCTTCTAACTCTCGCGTCGTTGGAATTTCCCTCGCC 240
Query 241 GGAAAACATCTCCGTGGCTACATCCCCTCAGAGCTTGGCTCACTTATTTACCTCCGTCGT 300
||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 241 GGAAAACATCTCCGTGGATACATCCCCTCGGAGCTTGGCTCGCTTGTTTACCTCCGCCGT 300
Query 301 CTTAACCTCCACAACAACGAACTTTACGGTTCAATTCCTACTCAATTATTCAACGCGACG 360
||||||||||| |||||||| |||| ||||| ||||| ||||| |||||||||||||||
Sbjct 301 CTTAACCTCCATAACAACGAGCTTTTTGGTTCGATTCCGACTCAGTTATTCAACGCGACG 360
Query 361 TCGCTTCATAGTATCTTCTTATACGGTAACAATCTCTCCGGTACTCTTCCTCCTTCGATC 420
|||||||||||| ||||||||||||| ||||||||||| ||| |||| ||||||||||||
Sbjct 361 TCGCTTCATAGTCTCTTCTTATACGGAAACAATCTCTCTGGTTCTCTCCCTCCTTCGATC 420
Query 421 TGTAAACTCCCAAAGCTTCAGAATCTCGATTTGTCTATGAATTCGCTCTCTGGAACTCTT 480
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TGTCACCTCCCAAAGCTTCAGAATCTCGATTTGTCCGGGAATTCGCTCTCTGGAACTCTT 480
Query 481 TCACCGGATCTCAACAAGTGTAAACAGCTTCAACGGTTGATCCTCTCCGCTAACAACTTT 540
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TCACCGGATCTCAACAAGTGTAAACAGCTTCAACGGTTGATCCTCGCCGCTAACAACTTC 540
Query 541 TCCGGTGAGATTCCTGGTGATATCTGGCCGGAATTGACTAATTTAGCTCAGCTTGATCTC 600
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 541 TCCGGTGAAATTCCTGGTGAAATCTGGCCGGAATTGAAGAATTTAGCTCAGCTTGATCTC 600
Query 601 TCTGCTAACGAATTTTCCGGCGAAATCCCTAAGGATATCGGAGAGCTTAAGTCTCTCTCT 660
|||||||||||||| |||||||||||||||| ||| ||||||| ||||| |||||||||
Sbjct 601 TCTGCTAACGAATTCACCGGCGAAATCCCTAAAGATCTCGGAGAACTTAAATCTCTCTCT 660
Query 661 GGTACTTTGAATCTCTCCTTT-AACCATTTATCCGGCCAAATCCCTAATTC-CTTAGGAA 718
|||||||| |||||||| ||| ||||||||||||||| |||||||||| || || ||| |
Sbjct 661 GGTACTTTAAATCTCTC-TTTCAACCATTTATCCGGCGAAATCCCTAAATCACT-AGGGA 718
Query 719 ATCTACCGGTGACAGTCTCTCTTGATCTCCGGAACAACGATTTCTCCGGCGAGATTCCTC 778
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATCTACCTGTTACAGTCTCTCTTGATCTCCGGAACAACGATTTCTCCGGCGAGATTCCTC 778
Query 779 AATCTGGTTCGTTCTCTAACCAGGGGCCAACCGCATTTCTCAATAATCCGAAACTGTGTG 838
|||||||||| ||||||||||| || ||||||||||| ||||||||||||||| ||||||
Sbjct 779 AATCTGGTTCATTCTCTAACCAAGGACCAACCGCATTCCTCAATAATCCGAAATTGTGTG 838
Query 839 GTTTCCCTCTCCAGAAAACTTGTAAAGACACTGATGAGAACTCTCCGGGGACTCGAAAGT 898
| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 GATTCCCTCTCCAGAAAGCTTGTAAAGACACTGATGAGAACTCACCGGGGACTCGAAAGT 898
Query 899 CGCCCGAGAATAATGCGGATTCTAGAAGAGGGTTAAGTACTGGATTAATAGTGTTGATCT 958
|||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 899 CGCCGGAGAATAATGGGGATTCTAGAAGAGGATTAAGTACTGGATTAATCGTGTTGATCT 958
Query 959 CGGTGGCAGATGCAGCAAGTGTAGCTTTTATTGGTTTAGTGTTAGTTTACTTGTACTGGA 1018
||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 959 CGGTGGCGGATGCAGCAAGTGTAGCTTTAATTGGTCTGGTGTTAGTTTACTTGTACTGGA 1018
Query 1019 AGAAAAAAGACTCTGAGGGAGGGTGTAGCTGCACAGGGAATGCGAAACTCGGTGGTGGTT 1078
|||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
Sbjct 1019 AGAAAAAAGACTCTGAGGGAGGATGTAGCTGTACAGGGAATGAGAAACTCGGTGGT--T- 1075
Query 1079 CGGTGAAGGGGAAATCGTGTTGTTGTATCACGGGGTTTCCGAAAG-AGGATGATTCGGAA 1137
||| ||||||||||| ||||||||| ||| ||||||||||||||| || | |||||||||
Sbjct 1076 CGGAGAAGGGGAAATTGTGTTGTTGCATCGCGGGGTTTCCGAAAGGAG-ACGATTCGGAA 1134
Query 1138 GCGGAAG-GTAATGAGAGAGGAGAAGGG-AAAGGAGATGGAGAGCTTGTAGCGATTGATA 1195
||||||| | || | ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1135 GCGGAAGAG-AACGGGAGAGGAGA-GGGTAAAGGAGATGGAGAGCTTGTAGCGATTGATA 1192
Query 1196 AAGGGTTTTCTTTTGAGCTTGATGAGTTG-TTGAGAGCTTCTGCATATGTTTTGGGGAAG 1254
|||||||||| |||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 1193 AAGGGTTTTCGTTTGAGCTTGATGAGTTGCTT-AGAGCTTCTGCTTATGTGTTGGGGAAG 1251
Query 1255 AGTGGGTTAGGGATAGTGTATAAAGTGGTGTTAGGGAATGGAGTTCCGGTGGCGGTGCGG 1314
|||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 1252 AGTGGGTTAGGGATAGTGTATAAAGTGGTGTTAGGGAACGGTGTTCCGGTGGCTGTAAGG 1311
Query 1315 CGACTTGGGGAAGGAGGGGAACAGAGGTATAAAGAGTTTGTTACGGAGGTTCAAGCTATG 1374
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CGACTTGGGGAAGGAGGAGAACAGAGGTATAAAGAGTTTGTTACGGAGGTTCAAGCTATG 1371
Query 1375 GGGAAAGTGAAACATCCTAATGTGGTGAAGTTAAGAGCTTATTATTGGGCTCCTGATGAG 1434
||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1372 GGGAAAGTGAAGCATCCTAATGTGGTGAAGCTAAGAGCTTATTACTGGGCTCCTGATGAG 1431
Query 1435 AAGCTTTTGATTAGTGACTTCGTTAACAATGGAAGTTTAGCTGATGCTCTTAGAGGGAGG 1494
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AAGCTTTTGATCAGTGACTTCGTTAACAATGGAAGTTTAGCTGATGCTCTTAGAGGGAGG 1491
Query 1495 AATGGTCAACCATCACCGAGCTTAACATGGTCAACGCGTATAAAGATCGCAAAAGGAGCT 1554
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1492 AATGGTCAACCATCACTGAGCTTAACATGGTCAACGCGGGTAAAGATCGCAAAAGGAGCT 1551
Query 1555 GCGCGTGGGTTAGCTTATCTACACGAGTGTAGTCCAAGGAAGTTGGTACATGGCGACGTT 1614
|| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1552 GCACGTGGGCTAGCTTATCTACACGAGTGTAGTCCAAGGAAATTGGTACATGGCGACGTC 1611
Query 1615 AAGCCTTCCAACATTCTTCTTGATTCCTCCTTCACTCCTTACATCTCTGACTTCGGTCTC 1674
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1612 AAGCCTTCCAACATTCTTCTTGATTCTTCCTTTACTCCTTACATCTCCGACTTCGGTCTC 1671
Query 1675 ACACGTCTCATCACCATCACTGCCGCTTCTGCCTCTTCTAACGAACCTTCCTCCTCCTCT 1734
||||||||||| |||||||||||| |||| ||||| ||||| |||||||| |||||||||
Sbjct 1672 ACACGTCTCATTACCATCACTGCCCCTTCCGCCTCCTCTAATGAACCTTCTTCCTCCTCT 1731
Query 1735 GCTGCGGGTGGTTTCTTAGGTGGAGCTCTTCCTTACACTTCCATCAAACCCTCAGATAGA 1794
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1732 GCCGCGGGCGGTTTCTTAGGTGGAGCTCTACCTTACACTTCCATCAAACCCTCTGATAGA 1791
Query 1795 TCCAACGGCTATAAAGCCCCCGAGGCCCGGCTCCCTGGAGGGAGGCCTACTCAGAAATGG 1854
|| |||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1792 TCTAACGGCTATAAAGCACCTGAGGCCCGTCTCCCTGGAGGGAGGCCCACTCAGAAATGG 1851
Query 1855 GACGTATACTCCTTCGGTGTTGTGCTTATGGAGCTTCTCACCGGGAAATCGCCGGATTCT 1914
||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 1852 GACGTCTACTCCTTCGGTGTTGTGCTTATGGAGCTTCTCACTGGGAAGTCTCCGGAATCT 1911
Query 1915 TCTCCGTTAAGCTCTTCCTCGACGTCTACGGTGGTTGTTGAGGTGCCGGATTTGGTGAAG 1974
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1912 TCTCCGTTAAGCTCCTCCTCGTCGTCTACGGTGGTTGTTGAGGTGCCGGATTTGGTGAAG 1971
Query 1975 TGGGTGAGGAAAGGGTTTGAAGAGGAGACTCCATTGTCGGACATGGTTGATCCAATGTTA 2034
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 TGGGTGAGGAAAGGATTTGAAGAGGAGACTCCATTGTCGGACATGGTTGATCCAATGTTG 2031
Query 2035 CTTCAAGAAGTTCACGCCAAGCAACAAGTCTTGTCCGTTTTTCATCT-AGCTCTCGCTTG 2093
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2032 CTTCAAGAAGTTCACGCCAAGCAACAAGTCTTGTCCGTTTTTCA-CTTAGCTCTCGCTTG 2090
Query 2094 TACCGAAGGTGACCCTGAAGTCCGTCCACGTATGAAGAACGTCTCTGAGAACATCGACAA 2153
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TACTGAAGGTGACCCTGAAGTTCGTCCACGTATGAAGAACGTCTCTGAGAACATCGACAA 2150
Query 2154 AATCTGA 2160
|||||||
Sbjct 2151 AATCTGA 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81284582830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5