BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67520.1
Length=2387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908303 jgi|Araly1|908303|Al_scaffold_0002_1384 1075 0.0
Ahg479059 jgi|Araly1|479059|fgenesh2_kg.3__1760__AT3G16030.1 830 0.0
Ahg887311 jgi|Araly1|887311|Al_scaffold_0810_1 507 2e-142
Ahg887836 jgi|Araly1|887836|Al_scaffold_0231_1 87.9 3e-16
Ahg475185 jgi|Araly1|475185|fgenesh2_kg.2__315__AT1G61380.1 62.1 2e-08
> Ahg908303 jgi|Araly1|908303|Al_scaffold_0002_1384
Length=2358
Score = 1075 bits (582), Expect = 0.0
Identities = 672/716 (94%), Gaps = 4/716 (1%)
Strand=Plus/Plus
Query 1 ATGTGTTCAAATGGCATCTTTGTCTCTCTTCTTACTTTATCTCTCTTGTTAGGAAAATCA 60
||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 ATGTGTTCATATGGCATCTTTGTCTCTCTTTTTACTTTATCTCTCTTGTTAGGGCAATCA 60
Query 61 TGCAGTGAAACAGATACGCTACATCAGGGTCAGTTCTTGAAAGATGGGCAAGAGCTCGTT 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAGTGAAACAGACACGCTACAACAGGGTCAGTTCTTGAAAGATGGGCAAGAGCTCGTT 120
Query 121 TCTGCTTTTAAAATCTTCAAACTCAAGTTTTTCAACTTTAAGAATTC-AGAAAACTTGTA 179
|||||||| ||||||||||||||||||||||||||| | |||||||| || ||||| |||
Sbjct 121 TCTGCTTTCAAAATCTTCAAACTCAAGTTTTTCAACGTCAAGAATTCAAG-AAACTGGTA 179
Query 180 TCTTGGAATTTGGTTCAACAATCTTTATCTTAATACTGATAGCCAGGACAGACCTGTCTG 239
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 180 TCTTGGAATTTGGTTCAACAATCTTTATCTTAATACTGATATCCAGGATAGAGCTGTCTG 239
Query 240 GATTGCTAACCGTAACAATCCAATCTCAGACCGCTCTGGAAGCCTCACAGTGGATTCTCT 299
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 240 GATTGCTAACCGTAACAATCCAATCTCGGAACGCTCTGGAAGCCTCACAGTTGATTCACT 299
Query 300 TGGCAGATTGAAGATTTTAAGAGGAGCATCAACCATGCTTGAGCTAAGCTCTATAGAAAC 359
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 300 TGGCAGATTGAGGATTTTAAGAGGATCATCAACCATGCTTGAGCTAAGCTCTACGGAAAC 359
Query 360 CACAAGAAACACAACCCTTCAGCTTTTGGATTCTGGAAATCTTCAGCTCCAAGAGATGGA 419
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGAAGAAACACAACCCTTAAGCTTTTGGATTCTGGAAATCTTCAGCTCCAAGAGATGGA 419
Query 420 TGCTGATGGATCGATGAAGCGGGTTTTGTGGCAAAGTTTCGATTATCCAACAGATACTCT 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TTCTGATGGATCGATGAAGCGGGTTTTGTGGCAAAGTTTCGATTATCCAACAGATACACT 479
Query 480 TCTTCCTGGGATGAAACTAGGTTTCGATGGCAAGACCAGGAAGAGATGGGAACTTACATC 539
|||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||
Sbjct 480 TCTTCCTGGGATGAAACTCGGTTTCGATGTCAAGACTGGGAAGAGATGGGAACTGACATC 539
Query 540 ATGGTTAGGTGATACTTTACCTGCTTCTGGATCTTTTGTCTTTGGGATGGATACTAATAT 599
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ATGGCTAGATGATACTTTACCTGCTTCTGGATCTTTTGTCTTTGGGATGGATGCTAATAT 599
Query 600 CACAAAC-GTATTGACCATCTTGTGGCGTGGAAACATGTATTGGAGTAGCGGGCTTTGGA 658
|||||| | |||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 600 TACAAACAG-ATTGACCATCTTGTGGCGTGGAAACACGTATTGGACAAGCGGGCTCTGGT 658
Query 659 ATAAAGGTCGGTTCTCCGAAGAGGAGTTAAACGAATGCGGTTTCCTCTTTTCCTTC 714
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATAAAGGTCGGTTTTCCGAAGAGGAGTTAAACGAATGCGGTTTCCTCTTTTCCTTC 714
Score = 917 bits (496), Expect = 0.0
Identities = 596/642 (93%), Gaps = 16/642 (2%)
Strand=Plus/Plus
Query 1132 AAT-GACCAAGAAATGCTACTACGTGAATTGGGAATTGATAGGAG-CTGCATACACAAGA 1189
||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 1329 AATAGACCAAGAAATGCTACTACGTGAATTGGGAATTGATAGGAGAC-GCCGACACAAGA 1387
Query 1190 GAAATGAAAGGAAGAGTAATAACGAGCTTCAGATTTTTAGCTTTGAAAGTGTAGTATCGG 1249
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1388 GAAGTGAAAGGAAGAGTAATAACGAGCTTCAGATTTTTAGCTTTGAAAGCGTAGTGTTGG 1447
Query 1250 CAACAGATGACTTCTCCGATGAAAACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATA 1309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 CAACAGATGACTTCTCTGATGAAAACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATA 1507
Query 1310 AGGGAAAGTTATTAAATGGGGAAGAAGTGGCTATCAAGAGACTATCTTTAGCATCTGGCC 1369
|||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1508 AGGGGAAGTTATTAGATGGGGAAGAAGTGGCTATCAAGAGACTATCTTTGGCGTCTGGTC 1567
Query 1370 AAGGATTAGTGGAGTTTAAAAACGAAGCTATACTTATTGCAAAGCTTCAGCATACAAATC 1429
|||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||
Sbjct 1568 AAGGATTAGTGGAGTTCAAGAATGAAGCTATGCTTATTGCAAAACTTCAGCATACAAATC 1627
Query 1430 TTGTTCAGGTT-TTAGGATGTTGCATCGAAAAAGATGAGAAAATGCTGATTTATGAATAC 1488
||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1628 TTGTTCAGGTTCTT-GGATGTTGCGTCGAGAAAGATGAGAAAATGCTGATTTATGAATAC 1686
Query 1489 ATGCAGAACAAGAGCCTTGACTACTTCCTCTTTG---A--T--C--CC-TTGAGGAAAAA 1538
||||| |||||||| ||||||||||||||||||| | | | || |||||||||||
Sbjct 1687 ATGCACAACAAGAGTCTTGACTACTTCCTCTTTGGTGAGCTTTCATCCCTTGAGGAAAAA 1746
Query 1539 CGTTTTGGATTGGACGTTGCGGTTCAGGATCATGGAAGGAATCATTCAAGGGCTTTTGTA 1598
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1747 CGTTTTGGATTGGACGCTGCGGTTCAGGATCATGGAAGGAATAATTCAAGGGCTTTT-TA 1805
Query 1599 CCTTCACAAGTACTCAAGATTGAAAGTGATACATAGAGACATCAAAGCTAGTAATATTTT 1658
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1806 CCTTCACAAGTACTCGAGGTTGAAAGTGATACACAGAGACATCAAAGCCAGTAACATTTT 1865
Query 1659 GCTAGACGAGGATATGAATCCGAAAATATCGGATTTTGGATTGGCTCGGATATTTGGAGC 1718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1866 GCTAGACGAGGATATGAATCCGAAAATATCGGATTTTGGAATGGCTCGGATATTTGGAGC 1925
Query 1719 GGAAGAAACAAGAGCCAACACCAAAAGAGTTGCTGGCACATT 1760
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1926 GGAAGAAACAAGAGCAAACACCAAAAGAGTTGCTGGCACATT 1967
Score = 612 bits (331), Expect = 4e-174
Identities = 363/379 (96%), Gaps = 0/379 (0%)
Strand=Plus/Plus
Query 1830 TGGCTATATGTCGCCGGAGTATTTTAGAGAAGGACTATTCTCGGCGAAATCAGATGTGTT 1889
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1968 TGGCTATATGTCTCCGGAGTATTTCAGAGAAGGACTATTCTCGGCGAAATCAGATGTGTT 2027
Query 1890 CAGCTTTGGGGTTCTAATGCTCGAAATCATTTGTGGGAGGAAGAACAATAGCTTTCACCA 1949
|||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 2028 CAGCTTCGGAGTTCTAATGCTTGAAATCATTTGTGGAAGGAAGAACAATAGCTTCCACCA 2087
Query 1950 TGACTTAGAAGGACCTTTGAATCTCATAGTTCATGTGTGGAATCTGTTTAAAGAGAACAA 2009
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 TGACTCAGAAGGACCTTTGAATCTCATAGTTCATGTGTGGAATCTGTTTAAAGAGAACAA 2147
Query 2010 AATTCGTGAGGTGATAGATCTGTCTTTGAGAGATTCTGCGCTTGATTACCCTCAAGTGTT 2069
|||||| |||| ||||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 2148 AATTCGCGAGGCGATAGATCTATCTTTGGGAGATTCGGCGCTTGATTACCCTCAAGTGTT 2207
Query 2070 GAGATGCGTTCAAGTTGCTCTATTGTGTGTACAAGAAAACGCGGAAGATAGACCAAGTAT 2129
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2208 GAGATGCGTTCAAGTTGCTCTGTTGTGTGTACAAGAAAACGCAGAAGATAGACCAAGTAT 2267
Query 2130 GTTAGACGTTGTGTCCATGATATATGGCGAAGGAAATAATGCTCTTTCTTTGCCTAAAGA 2189
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 GTTAGACGTTGTGTCGATGATATATGGCGAAGGAAATAATGCTCTTTCTTTGCCTAAAGA 2327
Query 2190 GCCTGCTTTCTATGATGGT 2208
|||||||||||||||||||
Sbjct 2328 GCCTGCTTTCTATGATGGT 2346
Score = 348 bits (188), Expect = 1e-94
Identities = 340/406 (84%), Gaps = 40/406 (10%)
Strand=Plus/Plus
Query 761 ACGATGCCAGAACATTTTTTCCAACCATAATGATAGACGAACAAGGCATTTTGCGTAGAG 820
||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||
Sbjct 716 ACGATGCCATAACATTTTTTCCCACCATAATGATAGACCAACAAGGCATTTTGCATAGAG 775
Query 821 -AGCAAATGCATC-G----G-CA--ACG-TA---ACAGGCAAAATTATAGGAACCGGAAT 867
| |||| |||| | | | | | || || ||||||||| |||||| | ||||
Sbjct 776 CA-AAAATTCATCAGACACGTAATTATGATAGTTACTGGCAAAATTCTAGGAATCAGAAT 834
Query 868 TGTTTGGCTGCAGGTTAC----GT----A-GTCCG-GGATGAGCC--A-T---ATGGGTT 911
|||||||| ||||||||| || | || || ||||||||| | | |||||||
Sbjct 835 TGTTTGGCCGCAGGTTACAAAGGTAACAACGT-CGCGGATGAGCCATATTCAAATGGGTT 893
Query 912 CACTTCTTTCAGAGTGACAGTATCTTCTTCCGCAAGCAATGGTTTTGTAC----T----- 962
|||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 894 CACTTCTTTCAGAGTGACAGTATCGTCTTCCTCAAGCAATGGTTTTGTACTTAATGAGAC 953
Query 963 TAGTGGAACGTTTAGTTCAGTTGATTGCAGTGCTATATGTTTGCAAAACTCTTCTTGTCT 1022
|||||||| |||| ||| ||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 954 TAGTGGAAGGTTTCGTTTAGTTGATTGCAATGCTATATGTCTGCAAAACTCCTCTTGTCT 1013
Query 1023 TGCCTATGCTTCAACCGAGCCGGATGGTACGGGTTGCGAAATCTGGAATACTTATCCTAC 1082
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1014 TGCCTATGCTTCAACCGAGCTGGATGGTACGGGTTGCGAAATTTGGAATACTTATCCTAC 1073
Query 1083 CAACAAAGGGTCGGCTTCTCATAGTCCTAGAACTATATATATCCGT 1128
|||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1074 CAACAAAGGGTCATCTTCTCATAGTCCTAGAACTATATACATCCGT 1119
> Ahg479059 jgi|Araly1|479059|fgenesh2_kg.3__1760__AT3G16030.1
Length=2304
Score = 830 bits (449), Expect = 0.0
Identities = 712/836 (85%), Gaps = 29/836 (3%)
Strand=Plus/Plus
Query 1 ATGTGTTCAAATGGCATCTTTGTC-TCTCTTCTTACTTTATCTCTCTTGTTAGGAAAATC 59
||||| ||||||||||||||| || | | || ||||||| ||||||||||||||| ||||
Sbjct 1 ATGTGGTCAAATGGCATCTTTCTCAT-TTTTTTTACTTTGTCTCTCTTGTTAGGACAATC 59
Query 60 ATGCAGTGAAACAGATACGCTACAT-CAGGGTCAGTTCTTGAAAGATGGGCAAGAGCTCG 118
||| |||||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 60 ATGTTGTGAAACAGATACGCTAC-TGCAGGGTCAGTACTTGAAAGATGGGCAAGAGCTCG 118
Query 119 TTTCTGCTTTTAAAATCTTCAAACTCAAGTTTTTCAACTTTAAGAATTC-AGAAAACTTG 177
|||| ||||| || ||||||||||| |||||||||||||| ||||||| || |||| |
Sbjct 119 TTTCAGCTTTCAATATCTTCAAACTAAAGTTTTTCAACTTGGAGAATTCAAG-CAACTGG 177
Query 178 TATCTTGGAATTTGGTTCAACAATCTTTATC-------T--T---AA-TA--CTGATAGC 222
|||||||||||||||| ||||||| |||||| | | || || ||||| |
Sbjct 178 TATCTTGGAATTTGGTACAACAATTTTTATCTTAGTGGTAATAAGAAGTATGGTGATATC 237
Query 223 CAGGACAGACCTGTCTGGATTGCTAACCGTAACAATCCAATCTCAGACCGCTCTGGAAGC 282
||||| | | |||| |||||||||||||||||||||||||| | | ||||||||||||
Sbjct 238 CAGGATAAAGCTGTTTGGATTGCTAACCGTAACAATCCAATTTTGGGTCGCTCTGGAAGC 297
Query 283 CTCACAGTGGATTCTCTTGGCAGATTGAAGATTTTAAGAGGAGCATCAA-CCATGCTTGA 341
||||||||||| ||||||||| |||||| |||||||||||||||||||| || |||||||
Sbjct 298 CTCACAGTGGACTCTCTTGGCCGATTGAGGATTTTAAGAGGAGCATCAAGCC-TGCTTGA 356
Query 342 GCTAAGCTCTATAGAAACCACAAGAAACACAACCCTTCAGCTTTTGGATTCTGGAAATCT 401
||||||| ||| ||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 357 GCTAAGCCCTACGGAAACCACAGGAAACACAACCCTTAAGCTGTTGGATTCTGGAAATCT 416
Query 402 TCAGCTCCAAGAGATGGATGCTGATGGATCGATGAAGCGGGTTTTGTGGCAAAGTTTCGA 461
||||||||||||||||||| ||||||||||||||| || | || ||||||||||||| ||
Sbjct 417 TCAGCTCCAAGAGATGGATTCTGATGGATCGATGAGGCAGATTCTGTGGCAAAGTTTTGA 476
Query 462 TTATCCAACAGATACTCTTCTTCCTGGGATGAAACTAGGTTTCGATGGCAAGACCAGGAA 521
||||||||| ||||| ||||||||||| |||||||| |||||| ||| |||| ||||
Sbjct 477 TTATCCAACGGATACCCTTCTTCCTGGTATGAAACTTGGTTTCAATGTTAAGAATGGGAA 536
Query 522 GAGATGGGAACTTACATCATGGTTAGGTGATACTTTACCTGCTTCTGGATCTTTTGTCTT 581
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 537 GAGATGGGAACTGACATCATGGCTAGGTGATACTTTACCTGCTTCTGGATCTCTTGTCTT 596
Query 582 TGGGATGGATACTAATATCACAAAC-GTATTGACCATCTTGTGGCGTGGAAACATGTATT 640
|||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 597 TGGGATGGATGCTAATATTACAAACCGG-TTGACCATCTTGTGGCGTGGAAACATGTATT 655
Query 641 GGAGTA-GCGGGCTTTGGAATAAAGGTCGG-TTCTCCGAAGAGGAGTTAAACGAATGCGG 698
|| | | | ||||| ||| ||| ||| || || ||| || || ||||| || | ||
Sbjct 656 GG-GCAAGTGGGCTCTGGTTTAAGGGT-GGATTTTCCTTGGATGAATTAAATGACTATGG 713
Query 699 TTTCCTCTTTTCCTTCGTTTCAACCAAGAGTGGACAATATTTTATGTATTCAGGTGATCA 758
|||||||||||||||| |||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct 714 TTTCCTCTTTTCCTTCATTTCAACCGAGAGTGAACACTATTTTATGTATTCAGATGATCA 773
Query 759 GGACGATGCCAGAACATTTTTTCCAACCATAATGATAGACGAACAAGGCATTTTGC 814
| |||| ||||||| ||||| | |||||||||||| |||| || |||||||
Sbjct 774 CAAATATGCTGGAACATTATTTCCCGCTATAATGATAGACCAACAGGGAATTTTGC 829
Score = 660 bits (357), Expect = 0.0
Identities = 453/500 (91%), Gaps = 4/500 (1%)
Strand=Plus/Plus
Query 1263 CTCCGATGAAAACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATAAGGGAAAGTT-AT 1321
||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1332 CTCTGATGCAAACAAGCTCGGTGAAGGAGGTTTTGGTCCTGTATATAAGGGGA-GTTTAA 1390
Query 1322 TAAATGGGGAAGAAGTGGCTATCAAGAGACTATCTTTAGCATCTGGCCAAGGATTAGTGG 1381
|| ||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 1391 TAGATGGGGAGGAAGTGGCTATCAAAAGACTATCATTAGCATCCGGGCAAGGATTAGTGG 1450
Query 1382 AGTTTAAAAACGAAGCTATACTTATTGCAAAGCTTCAGCATACAAATCTTGTTCAGGTTT 1441
|||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||| ||
Sbjct 1451 AGTTCAAGAACGAAGCTATGCTTATTGCAAAACTTCAGCACACAAATCTTGTTCAG-TTG 1509
Query 1442 -TAGGATGTTGCATCGAAAAAGATGAGAAAATGCTGATTTATGAATACATGCAGAACAAG 1500
||||||| ||||| || || || ||||||||| ||||||| |||||||||| ||||||
Sbjct 1510 CTAGGATGCTGCATAGAGAAGGACGAGAAAATGTTGATTTACGAATACATGCCCAACAAG 1569
Query 1501 AGCCTTGACTACTTCCTCTTTGATCCCTTGAGGAAAAACGTTTTGGATTGGACGTTGCGG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1570 AGCCTTGACTACTTCCTCTTTGATCCCTTGAGGAAAAACGTTTTGGATTGGACACTGCGG 1629
Query 1561 TTCAGGATCATGGAAGGAATCATTCAAGGGCTTTTGTACCTTCACAAGTACTCAAGATTG 1620
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 1630 TTCAGGATCATGGAAGGGATAATTCAAGGGCTTTTGTACCTTCACAAGTACTCGAGATTG 1689
Query 1621 AAAGTGATACATAGAGACATCAAAGCTAGTAATATTTTGCTAGACGAGGATATGAATCCG 1680
||||||||||| |||||||||||||| || || ||||| || |||||||||||||||||
Sbjct 1690 AAAGTGATACACAGAGACATCAAAGCCAGCAACATTTTACTGGACGAGGATATGAATCCC 1749
Query 1681 AAAATATCGGATTTTGGATTGGCTCGGATATTTGGAGCGGAAGAAACAAGAGCCAACACC 1740
|||||||| ||||||||| |||||||||||||||||||| ||||| | ||||| ||||||
Sbjct 1750 AAAATATCCGATTTTGGAATGGCTCGGATATTTGGAGCGCAAGAATCCAGAGCTAACACC 1809
Query 1741 AAAAGAGTTGCTGGCACATT 1760
||||||||||||||||||||
Sbjct 1810 AAAAGAGTTGCTGGCACATT 1829
Score = 174 bits (94), Expect = 2e-42
Identities = 167/200 (84%), Gaps = 13/200 (7%)
Strand=Plus/Plus
Query 915 TTCTTTCAGAGTGACAGTATCTTCTTCCGCAAGCAATGGTTTTGTAC-T--T---A---G 965
|||||| |||| ||||||||| ||| | |||||||||| ||| ||| | | | |
Sbjct 897 TTCTTTTAGAGAGACAGTATCGGCTTTCTCAAGCAATGGATTTATACTTAATGAGACTGG 956
Query 966 TGGAACGTTTAGTTCAGTTGATTG-CAGTGCTATATGTTTGCAAAACTCTTCTTGTCTTG 1024
||||| ||||||||||| |||||| || |||||||||| |||||||||||||||||||||
Sbjct 957 TGGAAGGTTTAGTTCAGCTGATTGCCA-TGCTATATGTATGCAAAACTCTTCTTGTCTTG 1015
Query 1025 CCTATGCTTCAACCGAGCCGGATGGTACGGGTTGCGAAATCTGGAATACTT-ATCCTACC 1083
|||||||||| ||| | | |||||||||||| |||||||||||||||| || ||||||||
Sbjct 1016 CCTATGCTTCTACCAATCTGGATGGTACGGGCTGCGAAATCTGGAATA-TTGATCCTACC 1074
Query 1084 AACAAAGGGTCGGCTTCTCA 1103
||||| |||| |||||||
Sbjct 1075 GACAAAAAGTCGTCTTCTCA 1094
> Ahg887311 jgi|Araly1|887311|Al_scaffold_0810_1
Length=708
Score = 507 bits (274), Expect = 2e-142
Identities = 409/474 (86%), Gaps = 9/474 (2%)
Strand=Plus/Plus
Query 1834 TATATGTCGCCGGAGTATTTTAGAGAAGGACTATTCTCGGCGAAATCAGATGTGTTCAGC 1893
|||||||| |||||||| || ||||||||||| |||||||||||||||||||| || |||
Sbjct 238 TATATGTCTCCGGAGTACTTCAGAGAAGGACTGTTCTCGGCGAAATCAGATGTATTTAGC 297
Query 1894 TTTGGGGTTCTAATGCTCGAAATCATTTGTGGGAGGAAGAACAATAGCTTTCACCATGAC 1953
|| || ||||||||| | |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 298 TTCGGAGTTCTAATGTTGGAAATCATTTGTGGAAGGAAGAACAATAGCTTCCACCATGAC 357
Query 1954 TTAGAAGGACCTTTGAATCTCATAGTTCATGTGTGGAATCTGTTTAAAGAGAACAAAATT 2013
| |||||||||| |||||||||||||||||||||||| |||||| ||||| ||| ||
Sbjct 358 TCAGAAGGACCTCTGAATCTCATAGTTCATGTGTGGAGTCTGTTCAAAGATAACCGCGTT 417
Query 2014 CGTGAGG-TGATAGATCTGTCTTTGAGAGATTCTGC-GCTTGATTACCCTCAAGTGTTGA 2071
| |||| || |||||| |||||| |||||||||| | |||| |||||||||||||||
Sbjct 418 CACGAGGTTG-TAGATCCATCTTTGGGAGATTCTGCAG-TTGAGAACCCTCAAGTGTTGA 475
Query 2072 GATGCGTTCAAGTTGCTCTATTGTGTGTACAAGAAAACGCGGAAGATAGACCAAGTATGT 2131
||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 476 GATGCGTTCAAGTTGCTCTGTTGTGTGTACAACAAAACGCAGAAGATAGACCAAGTATGT 535
Query 2132 TAGACGTTGTGTCCATGATATATGGCGAAGGAAATAATGCTCTTTCTTTGCCTAAAGAGC 2191
|||| |||||||| |||||||| ||||| || || || ||| ||||||||||||| ||||
Sbjct 536 TAGATGTTGTGTCGATGATATACGGCGACGGCAACAACGCTTTTTCTTTGCCTAACGAGC 595
Query 2192 CTGCTTTCTATGATGGTCCCCGGAGAAGCTTTCCAGAAAT-GAAGGTTGAGCCACAGGAG 2250
| ||||||||||||||||| |||||||||| || || || || | ||||||||| |||
Sbjct 596 CAGCTTTCTATGATGGTCCTCGGAGAAGCTCGCCGGAGATTGATG-TTGAGCCACCTGAG 654
Query 2251 CCGGAAAATGTATCGGCGAGTA---TTACCATCACGGTGCTGGAGGCAAGGTGA 2301
| ||||||||||||||| | || |||||||||| ||| |||| ||||| |||
Sbjct 655 CTGGAAAATGTATCGGCAAATAGAGTTACCATCACAGTGATGGAAGCAAGATGA 708
Score = 327 bits (177), Expect = 2e-88
Identities = 215/234 (92%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1525 CCCTTGAGGAAAAACGTTTTGGATTGGACGTTGCGGTTCAGGATCATGGAAGGAATCATT 1584
||||||||||||||| ||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1 CCCTTGAGGAAAAACATTTTGGATTGGACACTGCGGTTCAGGATCATGGAAGGGATAATT 60
Query 1585 CAAGGGCTTTTGTACCTTCACAAGTACTCAAGATTGAAAGTGATACATAGAGACATCAAA 1644
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 CAAGGGCTTTTGTACCTTCACAAGTACTCGAGATTGAAAGTGATACACAGAGACATCAAA 120
Query 1645 GCTAGTAATATTTTGCTAGACGAGGATATGAATCCGAAAATATCGGATTTTGGATTGGCT 1704
|| || || ||||| || ||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 121 GCCAGCAACATTTTACTGGACGAGGATATGAATCCCAAAATATCCGATTTTGGAATGGCT 180
Query 1705 CGGATATTTGGAGCGGAAGAAACAAGAGCCAACACCAAAAGAGTTGCTGGCACA 1758
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Sbjct 181 CGGATATTTGGAGCGCAAGAATCCAGAGCTAACACCAAAAGAGTTGCTGGCACA 234
> Ahg887836 jgi|Araly1|887836|Al_scaffold_0231_1
Length=1674
Score = 87.9 bits (47), Expect = 3e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 441 GGTTTTGTGGCAAAGTTTCGATTATCCAACAGATACTCTT-CTTCCTGGGATGAAACTAG 499
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Sbjct 396 GGTTTTGTGGCAAAGTTTCGATTATCCAACAAACACT-TTACTTCCTGGGATGAAACTCG 454
Query 500 GTT 502
|||
Sbjct 455 GTT 457
> Ahg475185 jgi|Araly1|475185|fgenesh2_kg.2__315__AT1G61380.1
Length=2592
Score = 62.1 bits (33), Expect = 2e-08
Identities = 46/52 (88%), Gaps = 2/52 (4%)
Strand=Plus/Plus
Query 1663 GACGAGGATATGAAT-CCGAAAATATCGGATTTTGGATTGGCTCGGATATTT 1713
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Sbjct 1947 GACGAGAAAATG-ATCCCAAAAATATCGGATTTTGGATTGGCTCGGATGTTT 1997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89931068445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5