BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67530.1
Length=2755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315769 jgi|Araly1|315769|fgenesh1_pm.C_scaffold_2000802 3731 0.0
Ahg472912 jgi|Araly1|472912|fgenesh2_kg.1__2866__AT1G24330.1 1469 0.0
> Ahg315769 jgi|Araly1|315769|fgenesh1_pm.C_scaffold_2000802
Length=2364
Score = 3731 bits (2020), Expect = 0.0
Identities = 2254/2366 (95%), Gaps = 19/2366 (1%)
Strand=Plus/Plus
Query 180 ATGGATGTGACCGAGCTTGAAGAGAATCTATTCGCGGCTAGCGATGCCAAGTTACATGGA 239
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGATGTGACAGAGCTTGAGGAGAATCTATTCGCGGCTAGCGATGCTAAGTTACATGGA 60
Query 240 GATATGTGCAAGGAACTATCTGGAGTTCTATGCAAGGTACTTTCAATCTTCCCGTCATTG 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GATATGTGCAAGGAACTATCTGGAGTTCTATGCAAGGTACTCTCAATCTTCCCGTCATTG 120
Query 300 GAAGGAGCAAGACCGCGTAGCAAATCAGGGATTCAAGCCTTATGCTCTTTACATATTGCA 359
|||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 GAAGGAGCTAGACCGCGTAGTAAATCAGGGATTCAGGCCTTGTGCTCTTTACATATTGCA 180
Query 360 CTTGAGAAGGCAAAAAATATTCTTCAGCACTGTTCTGAGTGTAGTAAACTTTACTTGGCC 419
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CTTGAGAAGGCAAAGAATATTCTTCAGCACTGTTCTGAATGTAGTAAACTTTACTTGGCC 240
Query 420 ATAACGGGGGATGCGGTTCTTTTAAAGTTTGAGAAAGCAAAAATTGCTCTCATTGATGGT 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 241 ATAACGGGGGATGCGGTTCTTTTAAAGTTTGAGAAAGCGAAAATTGCTCTCATCGACGGT 300
Query 480 CTTAAACGTGTAGAAGACATTGTTCCTAGCTCAATTGGGTCACAGATTTTGGAAATTGTT 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CTTAAACGTGTAGAAGACATTGTTCCTAGTTCAATTGGGTCACAGATTTTGGAAATTGTT 360
Query 540 GGTGAACTAGAGAACACCAGGTTCATGCTTGATCCATCGGAGAAGGAAGTCGGTGATCAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGTGAACTAGAGAACACCAGGTTCATGCTTGATCCATCGGAGAAGGAAGTCGGTGATCAG 420
Query 600 ATTATTGCATTGCTTCAACAAGGGAAGAAATTTGACAACTGTAATGACAACACCGAGCTT 659
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 ATCATTGCATTGCTCCAACAAGGGAAAAAATTTGACAACTGTAATGACAACACCGAGCTT 480
Query 660 GAAATTTTCCACCGTGCTGCTACTAGACTAAGTATCACTTCTTCTAGAGTGGCTCTGGCA 719
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GAAATTTTCCACCGTGCAGCTACTAGACTCAGTATCACTTCTTCTAGAGTGGCTCTGGCG 540
Query 720 GAACGAAGGGCTTTAAAGAAACTCATTGACAGGGCACGCGCCGAAGAAGACAAGCGTAAG 779
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 GAACGAAGGGCTCTAAAGAAACTCATTGACAGGGCACGCGCTGAAGAAGACAAGCGTAAG 600
Query 780 GAATCAATTGTGGCTTATCTTCTGCATCTTATGAGAAAATGCTCCAAGCTATTCAGAAGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAATCAATTGTGGCTTATCTTCTGCATCTTATGAGAAAATGCTCCAAGCTATTCAGAAGT 660
Query 840 GAGATCTTGGATGAGAATGACTCTCCGGGTTCCTATCCATG-T-T-CT--C---C----- 886
||||| ||||||||||||||||||| |||||| |||||||| | | || | |
Sbjct 661 GAGATTTTGGATGAGAATGACTCTCAGGGTTCATATCCATGTTCTCCTACCGTTCAGGGT 720
Query 887 --TAATGAAGATCATGGGAGTGTTCATGGGTTTGGTCGTCAGCTATCAAGGTTTGGTTCT 944
||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 721 TTTAATGAAGATCGTGGGAGTGTTCATGGGTTTGGCCGTCAGCTATCGAGGTTTGGTTCT 780
Query 945 TTAAACGACAAGCCCATGAACAGCATAAATTCAGGACAGATGCCTGTTCCACCCGAAGAA 1004
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 TTAAACGACAAGCCCGTGAACAGCATAAATTCAGGACAGATGCCCGTTCCACCCGAAGAA 840
Query 1005 CTGAGATGTCCCATATCTTTGCAACTTATGTGTGATCCTGTCATTATTGCTTCAGGGCAG 1064
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGAGATGCCCCATATCTTTGCAACTTATGTGTGATCCTGTCATTATTGCTTCAGGGCAG 900
Query 1065 ACTTATGAACGGGTCTGTATTGAGAAATGGTTCAGTGATGGGCATAATACTTGCCCAAAG 1124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 ACTTATGAACGGGTCTGTATTGAGAAATGGTTCAGTGATGGGCATAATACCTGCCCAAAG 960
Query 1125 ACTCAACAACAGCTCCCACATATCTCTTTGACTCCCAATAACTGTGTTAAAGGTCTTATT 1184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACTCAACAACAGCTCCCACATCTCTCTTTGACTCCCAATAACTGTGTTAAAGGTCTTATT 1020
Query 1185 GCGAGCTGGTGTGAACAGAATGGAACTCAAATTCCTAGTGGGCCGCCGGAATCTCAAGAC 1244
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1021 GCAAGCTGGTGTGAACAGAATGGAACTCAAATCCCTAGTGGGCCACCGGAATCTCAAGAC 1080
Query 1245 CTCGACTACTGGAGACTAGCTCTCTCTGACTCCGAGTCCACCAAATCACAGTCAGTCAAC 1304
|||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1081 CTCGACTACTGGAGACTAGCTCTCTCCGACTCTGAATCCACCAAATCACAGTCGGTCAAC 1140
Query 1305 AGTATAGGGTCGTATAAATTGAAGGGCGTAAAAATTGTTCCGTTGGAGGAGAATGGTACT 1364
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 AGTATAGGGTCGTGTAAATTGAAGGGCATAAAAATTGTTCCGTTGGAGGAGAATGGTACT 1200
Query 1365 ACTGTTGTTGAACGACAAAACACAGAAGAAAGTTTTGTGTCTGATGATGATGATGAGGAG 1424
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 ACTGTTGTCGAACGACAAAACACAGAAGAAAGTTTTGTGTCTGATGATGATGATGATGAG 1260
Query 1425 GATTCTGATATAAATGTACTTGAGAGGTATCAAGATTTATTGGCTGTCTTAAACGAAGAG 1484
||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 GATTCTGATTTACATGTACTTCAGAGGTATCAAGATTTATTGGCTATCTTAAACGAAGAG 1320
Query 1485 GAGGGTTTGGAGAAAAAATGCAAGGTTGTAGAAAAAATCAGGCTATTGCTGAAGGATGAT 1544
|||| ||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||
Sbjct 1321 GAGGATTTGGAGAAAAAAGGTAAGATTGTAGAAAAGATCAGGCTATTGCTGAAGGATGAT 1380
Query 1545 GAAGAGGCCAGGATCTTCATGGGAGCCAACGGGTTTGTTGAAGCCTTGTTGCGATTCTTA 1604
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1381 GAAGAGGCCAGGATCTTCATGGGAGCCAACGGGTTTGTCGAAGCCTTGTTACGGTTCTTA 1440
Query 1605 GGATCAGCTGTAGATGATAACAATGCTGCAGCTCAGGATAGTGGAGCTATGGCTCTGTTC 1664
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GGATCAGCTGTGGATGAGAACAATGCGGCAGCTCAGGATAGTGGAGCTATGGCTCTGTTC 1500
Query 1665 AATTTAGCCGTCAACAACAACAGGAACAAAGAGTTGATGTTAACTTCTGGGGTGATTCGG 1724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 AATTTAGCCGTCAACAACAACAGGAACAAAGAGTTGATGTTAACTTCTGGGGTGATTCCG 1560
Query 1725 CTGCTGGAGAAAATGATTTCTTCTGCTGAGTCCCATGGTTCAGCAACCGCGCTTTATCTG 1784
|||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 1561 TTGCTCGAGAAAATGATCTCTTCTTCTGAGTCCCAAGGTTCAGCAACCGCGCTTTATCTC 1620
Query 1785 AACCTTTCCTGTCTCGATGAAGCAAAGTCCGTGATAGGTTCAAGCCAAGCAGTACCTTTC 1844
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AATCTTTCCTGTCTCGATGAAGCAAAGTCCGTGATAGGTTCAAGCCAAGCAGTACCTTTC 1680
Query 1845 CTTGTCCAACTTCTTCAGAAGGAAATCGAAACCCAATGCAAGCTCGATGCTCTTCACGCC 1904
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CTTGTCCAACTTCTTCAGAGGGAAATCGAAACCCAATGCAAGCTCGATGCTCTTCACGCC 1740
Query 1905 CTCTACAACCTTTCCACATATTCCCCCAATATCCCTGCTCTCCTTTCATCTAACATCATC 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CTCTACAACCTTTCCACATATTCCCCCAATATCCCTGCTCTCCTTTCATCTAACATCATC 1800
Query 1965 AAGAGCCTCCAAGGCCTTCTCGCATCAACAGGTGAAAATTTGTGGATAGAGAAGTCACTA 2024
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 1801 AAGAGCCTCCAAGGCCTTCTCACATCAACAGGTGAAAATTTGTGGACAGAGAAGTCATTA 1860
Query 2025 GCCGTATTGCTAAATCTAGCTTCAAGCCAGGAGGGCAAAGATGAAGCGGTATCATCACAG 2084
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1861 GCCGTATTGCTAAATCTAGCTTCGAGCCAGGAAGGCAAAGATGAAGCGGTATCATCACAA 1920
Query 2085 GGCATGATCAGCAGTCTAGCAACAGTGCTAGACATGGGTGACACAACAGAGCAGGAGCAA 2144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1921 GGCATGATCAGCAGTCTAGCAACAGTGCTAGACATGGGTGACACGACAGAGCAGGAGCAA 1980
Query 2145 GCTGTTTCATGCCTTTTGATTCTATGCAATGGAAGAGAGTCTTGTATCCAAATGGTGCTA 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 GCTGTTTCATGCCTTTTGATTCTATGCAATGGAAGAGAGTCTTGTATCCAAATGGTGCTA 2040
Query 2205 CAAGAAGGTGTGATACCATCATTAGTGTCAATCTCTGTAAACGGAACACCTCGAGGCAGA 2264
||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||
Sbjct 2041 CAAGAAGGTGTGATACCATCATTAGTGTCAATCTCAGTGAACGGGACACCGCGAGGCAGA 2100
Query 2265 GAGAAGTCTCAGAAGCTTCTAATGCTGTTTAGGGAAGAAAGACAGCAACGGGACCAGCCA 2324
|||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 2101 GAGAAGTCTCAGAAGCTTCTAATGCTGTTTAGGGAACAACGGCAGCAACGGGATCAGCCA 2160
Query 2325 TCTTCAAACAGAGATGAGCCACCC-CAAAAGGAACCTGCCC-GAAAATCTCTCTCAGCAC 2382
||| ||||||||||||| || ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 2161 TCTCCAAACAGAGATGATCC-CCCACAAAAGGAACCT-CCCAGAAAATCTCTCTCAGCAC 2218
Query 2383 CGCTGTCTGTCCATGGATCAACTCCTGCTTCAGCTTCAGTTCAAGACTATGAACCAAGAG 2442
|| |||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||
Sbjct 2219 CGATGTCTGTCCATGGATCAAATCCAGCTTCAGCTCCAGTTCCAGACTATGAACCAAGAT 2278
Query 2443 TCCTGTCGAAATCAATGTCGAGAAGAAAGTCGATGGCAAGACCATTCAGCTTCTTCTGGA 2502
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2279 TCTTGTCGAAATCAATGTCGAGAAGAAAGTCGTTGGCAAGACCATTCAGCTTCTTCTGGA 2338
Query 2503 AGAAAAGCTACTCGGTTCGCGAGTGA 2528
||||||||||||||||||||||||||
Sbjct 2339 AGAAAAGCTACTCGGTTCGCGAGTGA 2364
> Ahg472912 jgi|Araly1|472912|fgenesh2_kg.1__2866__AT1G24330.1
Length=2298
Score = 1469 bits (795), Expect = 0.0
Identities = 1574/1941 (81%), Gaps = 90/1941 (5%)
Strand=Plus/Plus
Query 452 GAAAGCAAAAAT-TGCTCTCATTGATGGTCTTAAACGTGTAGAAGACATTGTTCCTAGCT 510
|||||| ||||| ||| || || || |||||| ||| || || ||||||||||||||||
Sbjct 237 GAAAGC-AAAATCTGCACTTATCAATAGTCTTAGACGCGTGGAGGACATTGTTCCTAGCT 295
Query 511 CAATTGGGTCACAGATTTTGGAAATTGTTGGTGAACTAGAGAACACCAGGTTCATGCTTG 570
|||||||||| ||||||||||| |||||||||||||||||| |||||| |||| | ||||
Sbjct 296 CAATTGGGTCTCAGATTTTGGACATTGTTGGTGAACTAGAGCACACCAAGTTCTTACTTG 355
Query 571 ATCCATCGGAGAAGGAAGTCGGTGATCA-GATTATTGCATTGCTT-CAACAAGGGAAGAA 628
||| ||| ||||||||||| |||||| | ||| |||||| | || ||||||||||||||
Sbjct 356 ATCTATCAGAGAAGGAAGTTGGTGAT-AGGATAATTGCACT-ATTGCAACAAGGGAAGAA 413
Query 629 ATTTGACAACTGTAATGACAACACCGAGCTTGAAATTTTCCACC-GTGCTGCTACTAGAC 687
|||||||||| | ||||||| |||||| ||||||||||| |||| | || |||||||||
Sbjct 414 ATTTGACAACGGCAATGACAGCACCGAACTTGAAATTTTTCACCAG-GCAGCTACTAGAT 472
Query 688 TAAGTATCACTTCTTCTAGAGT-GGCTCTGGCAGAACGAAGGGCTTTAAAGAAACTCATT 746
||||||| |||||||||||| | |||||||| || || | ||||||||||||||||||
Sbjct 473 TAAGTATAACTTCTTCTAGA-TCAGCTCTGGCGGAGCGGCGTGCTTTAAAGAAACTCATT 531
Query 747 GACAGGGCACGCGCCGAAGAAGACAAGCGTAAGGAATCAATTGTGGCTTATCTTCT-GCA 805
||||||||||| | |||||||| || || ||||| |||||||||||||| || || |||
Sbjct 532 GACAGGGCACGTGTGGAAGAAGATAAACGGAAGGAGTCAATTGTGGCTTACCT-CTTGCA 590
Query 806 TCTTATGAGAAAATGCTCCAAGCTATTCAGAAGTGAGATCTTGGATGAGAATGACTCTCC 865
||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 591 TCTCATGAGAAAATACTCCAAGCTATTCAGAAGTGAGATGTTGGATGAGAATGATTCTCC 650
Query 866 GGGTTC--CTATCCATGTTCTCCTAATG---AAGAT-C-A-TGG-GA--GTGTTCATGGG 914
| |||| | | |||||||| || | || ||| | | | || || ||||| ||| |
Sbjct 651 GTGTTCAAC-A-CCATGTTCCCCCACTGGTCAAGGTTCTAATGAAGATCGTGTTAATGCG 708
Query 915 TTTGGTCGTCAGCTATC-AAGGTTTGGTTCT-TTAAACGACAAGCCCATGAACAGCAT-A 971
||||| ||||| ||||| ||| ||||||||| |||| | | ||||| |||||||| | |
Sbjct 709 TTTGGGCGTCAACTATCCAAG-TTTGGTTCTATTAA-CTATAAGCCTATGAACAGTAGGA 766
Query 972 AATTCAGGACAGATGCCTGTTCCACCCGAAGAACTGAGATGTCCCATATCTTTGCAACTT 1031
|| ||||||||||||| | ||||| |||||||| || ||||||||||||||||| |||
Sbjct 767 AAC-CAGGACAGATGCCCATCCCACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTT 825
Query 1032 ATGTGTGATCCTGTCATTATTGCTTCAGGGCAGACTTATGAACGGGTCTGTATTGAGAAA 1091
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 826 ATGTGTGATCCTGTCATTATTGCTTCTGGACAGACTTATGAACGGGTCTGTATCGAGAAA 885
Query 1092 TGGTTCAGTGATGGGCATAA-TACTTGCCCAAAGACTCAACAACAGCTCCCACATATCTC 1150
|||||||||||||| ||||| | ||||||| |||||||| || |||||||||||| | ||
Sbjct 886 TGGTTCAGTGATGGACATAACT-CTTGCCCCAAGACTCAGCAGCAGCTCCCACATCTTTC 944
Query 1151 TTTGACTCCCAATAACTGTGTTAAAGGTCTTATTGCGAGCTGGTGTGAACAGAATGGAA- 1209
| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 945 CCTAACTCCCAATTACTGTGTTAAAGGTCTGATTGCGAGCTGGTGTGAGCAGAATGGAAT 1004
Query 1210 CTCAAATTCCTAGTGGGCCGCCGGAATCTCAAGACCTCGACTACTGGAGACTAGCTC-TC 1268
|||| | || | ||| || || ||||||| |||||| |||||||||||||||| | |
Sbjct 1005 CTCAG-TCCCCAATGGACCACCAGAATCTCTTGACCTCAACTACTGGAGACTAGC-CATG 1062
Query 1269 TCTGACTCCGAGTCCACCAAATCACAGTCAGTCAACAGTATAGGGTCGTATAAATTGAAG 1328
|||||||| || ||| |||| ||| ||||||| | ||| |||| |||| | | ||||
Sbjct 1063 TCTGACTCTGAATCCCCCAATTCAAAGTCAGTTGATAGTGTAGGATCGTGCACACCGAAG 1122
Query 1329 GGCGTAAAAATTGTTCCGTTGGAGGAGAATGGTACTACTGT-TGTTGAACGACAA-AACA 1386
| || ||||| ||||| |||||||||| | |||||| || | | ||||||||| || |
Sbjct 1123 GTTGTTAAAATCGTTCCTTTGGAGGAGAGTAGTACTATTGAATCT-GAACGACAACAAAA 1181
Query 1387 CAGAAGAAAGTTTTGTGTCT-GATGATGA-TGATGAGGAGGATTCTGATATAAATGTACT 1444
|||||||| || ||| | || | | |||||||| ||||||||| || ||||| ||
Sbjct 1182 -AGAAGAAAACAATGA-TCTTGTTG-TCAATGATGAGGTGGATTCTGAAATCAATGTTCT 1238
Query 1445 TGAGAGGTATCAAGATTTATTGGCTGTCTTAAACGAAGAGGAGGGTTTGGAGAAAAAATG 1504
||| ||||||| ||| ||||||| |||| || ||||||||| |||| ||||| ||
Sbjct 1239 AGAGGGGTATCATGATATATTGGCAATCTTGGACAAAGAGGAGGACTTGGCTAAAAAGTG 1298
Query 1505 CAAGGTTGTAGAAAAAATCAGGCTATTGCTGAAGGATGATGAAGAGGCCAGGATCTTCAT 1564
||| || |||||||| ||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 1299 CAAAGTAGTAGAAAATGTCAGGCTATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCAT 1358
Query 1565 GGGAGCCAACGGGTTTGTTGAAGCCTTGTTGC-GATTCTTAG-GATCAGCTGTAGATGAT 1622
||||||||| ||||| || ||||| || || | | |||| || | |||||||| ||||
Sbjct 1359 GGGAGCCAATGGGTTCGTCGAAGCATTTTTACAGTTTCT-AGAG-TCAGCTGTTCATGAA 1416
Query 1623 AACAATGCTGCAGCTCAGGATAGTGGAGCTATGGCTCTGTTCAATTTAGCCGTCAACAAC 1682
|||||||| || || ||||| | |||||||||||||| || || ||||| || |||||
Sbjct 1417 AACAATGCAGCCGCACAGGAAACCGGAGCTATGGCTCTATTTAACTTAGCAGTGAACAAT 1476
Query 1683 AACAGGAACAAAGAGTTGATGTTAACTTCTGGGGTGATTCGGCTGCTGGAGAAAATGATT 1742
||||||||||||| ||||||| | ||||| ||||| || | ||||||||||||||||||
Sbjct 1477 AACAGGAACAAAGGGTTGATGCTGACTTCAGGGGTCATCCCACTGCTGGAGAAAATGATT 1536
Query 1743 TCTTCTGCTGAGTCCCATGGTTCAGCAACCGCGCTT-TATCTGAACCTTTCCTGTCTCGA 1801
|||| | | | ||||| || ||||||| || || ||||| ||||| || || |||||
Sbjct 1537 TCTTGTTCCCAATCCCAAGGGCCAGCAACTGCA-TTATATCTAAACCTCTCATGCCTCGA 1595
Query 1802 TGAAGCAAAGTCC-GTGATAGGTTCAAGCCAAGCAGTACC--TTTCCTTGTCCAA-CTTC 1857
||||| ||| || ||||| || |||||||||||||| || ||| | || || ||||
Sbjct 1596 GGAAGCCAAG-CCTGTGATTGGCTCAAGCCAAGCAGTTCCCGTTTTCGTG---AATCTTC 1651
Query 1858 TTCAGAAGGAAATCGAAACCCAATGCAAGCTCGATGCTCTTCACGCCCTC-------T-- 1908
||| |||||| |||||||||||||||||| || || |||||||||||| |
Sbjct 1652 TTCTTCAGGAAACCGAAACCCAATGCAAGCTGGACGCCCTTCACGCCCTCCACGCCCTCT 1711
Query 1909 ACAACCTTTCCACATATTCCCCCAATAT-CCCTGCTCTCCTTTCATCTAACATCATCAAG 1967
||||||| ||||| || || || ||||| ||| |||| |||||||| || || |||||
Sbjct 1712 ACAACCTCTCCACCTACTCTCCAAATATTCCCA-CTCTTCTTTCATCAAATATTATCAAA 1770
Query 1968 AGCCTCCAAG-GCCTTCTCGCATCAACAGGTGAAA-ATTTGTGGATAGAGAAGTCACTAG 2025
|||||||||| || || |||||||||||| || | |||||||||||||||||| |||
Sbjct 1771 AGCCTCCAAGTGC-TT---GCATCAACAGGT-AACCACTTGTGGATAGAGAAGTCATTAG 1825
Query 2026 CCGTATTGCTAAATCTAGCTTCAAGCCAGGA-GGGCAAAGATGAAGCGG-TATCATCACA 2083
|||| || ||||| ||||| || |||| ||| ||| ||||| || | | ||||| ||||
Sbjct 1826 CCGTTTTACTAAACCTAGCCTCTAGCCGGGAAGGG-AAAGAAGA-GATGATATCAACACA 1883
Query 2084 GGGCATGATCAGCAGTCTAGCAACAGTGCTAGACATGGGTGACACAA-CAGAGCAGGAGC 2142
||||||||||| | ||| ||||| |||||||||| |||||||| | || || ||||
Sbjct 1884 AGGCATGATCAGTACTCTTGCAACGGTGCTAGACACCGGTGACACGGTC-GAACAAGAGC 1942
Query 2143 AAGCTGTTTCATGCCTTTTGATTCTATGCAATGGAAGAGAGTCT-TGTATCCAAATGGTG 2201
|||| ||||| |||||| |||| ||||| | ||||| |||| | |||||||| ||||||
Sbjct 1943 AAGCAGTTTCTTGCCTTGTGATCCTATGTACGGGAAGTGAGT-TGTGTATCCAGATGGTG 2001
Query 2202 CTACAAGAAGGTGTGATACCATCAT-TAGTGTCAATCTCTGTAAACGGAACACCTCGAGG 2260
||||||||||| ||||| ||||| | | || || ||||| || ||||||| || |||||
Sbjct 2002 CTACAAGAAGGAGTGATTCCATC-TCTGGTTTCGATCTCAGTGAACGGAAGTCCCCGAGG 2060
Query 2261 CAGAGAGAAGTCTCAGAAGCTTCTAATGCTGTTTAGGGAAGAAAGACAGCAACGGGACCA 2320
||||| ||||||||||||||||| |||||||| |||||| |||| || || | || ||
Sbjct 2061 AAGAGACAAGTCTCAGAAGCTTCTGATGCTGTTCAGGGAACAAAGGCA--AA-GAGATCA 2117
Query 2321 GCCATCTTCAAACAGAGATGA 2341
|||||| |||| ||||||||
Sbjct 2118 GCCATCACCAAAGAGAGATGA 2138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103948278605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5