BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67540.2
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475858 jgi|Araly1|475858|fgenesh2_kg.2__988__AT1G67540.1 1279 0.0
> Ahg475858 jgi|Araly1|475858|fgenesh2_kg.2__988__AT1G67540.1
Length=1152
Score = 1279 bits (692), Expect = 0.0
Identities = 836/904 (92%), Gaps = 15/904 (2%)
Strand=Plus/Plus
Query 134 GGAGCAACCGGCGAGAAGGAGGCCGCGACGTCGTCCTCTTGAGACTTGTGGTGGTGTAAT 193
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 188 GGAGCAACCAACGAGAAGGAGGCCACGACGTCGTCCTCTTGAGACTTGTGGTGGTGTGAT 247
Query 194 ACTCTCCATGACTCGTGTTCTTTACACAAGAAGCCAGACTCTGATGAAGAAGAAGAAGAA 253
|||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 248 ACTCTCCATGGCTCGTGTTGTATACACAAGAAGCCAGACTC---TGAAGAAGAAGAAGAA 304
Query 254 TCTATCCTCTTGGCTATTGAGGAAACTCTTTGAATTCGTTATCTTCTTTGTTTCGATGAC 313
|||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 305 TCTAGCCTCGTGGCTATTGCGGAAACTCTTCGAATTCGTTATCTTCTTTGTTTCGATGAC 364
Query 314 AAGTCCGTTTCATCGTCATTTTCTCGCGGTTCTCTCTGTAGCTGACGATCATATACTCGC 373
||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||
Sbjct 365 AAGTCCGTTTCATCGCCATTTTCTCGCGATTCTCTCTGTAGCTGACGATCACATTCTCGC 424
Query 374 GTTACAAGACGCAATCGAGACTTACTTCCCTTCTTCAAGCAATGTGTTTGTTAAGATCTT 433
||| |||||||| || |||||||||||||||||||| ||| |||||| || ||||||||
Sbjct 425 GTTGCAAGACGCGATTGAGACTTACTTCCCTTCTTCCAGCTTTGTGTTCGTCAAGATCTT 484
Query 434 TGATTTGTTGATCATTGTAGAGACTCTGCCAGAGAAACTTGATGGAGTGCTCAAGAAACT 493
|||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 485 CGATTTGCTGATCATTGTAGAGACTCTGCCAGAGAAATTTGATGGATTTCTCAAGAAACT 544
Query 494 TCCGAGTTTGATGAGCCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGTTATTTCTAG 553
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 545 TCCGAGTTTGATGAACCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGCTATTTCTTG 604
Query 554 GCTTGGTTTGTTGGTGAACGTGTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAATGA 613
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 605 GCTTGGTTTGTTGGTGAACGTTTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAAGGA 664
Query 614 GAAAGAGATCACAGTTGATAGGAGCTTTAGCAGATCAGGGTCAGTTTCAGAAG-AG--GA 670
|||||||||||| || ||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 665 GAAAGAGATCACGGTCGATAGGAGCTTTAGCAGATCAGGATCAGTTTCAGAAGAAGAAGA 724
Query 671 GGAAGAGAAGAGGAATTTGGGGACGGAGAAGAAAGTGTCGTACAAGGAGGCATTACAGAG 730
||||||||||| ||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 725 GGAAGAGAAGACGAAATTCGGGACAGAGAAGAAAGTGTCGTACAAAGAGGCATTACAGAG 784
Query 731 AGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGAAGCAGCAGTAGCCGCAGAGA 790
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 785 AGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGCAGCAGCAGCAGCCGCGGAGA 844
Query 791 TCCGATCTTGGAACTCTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAG 850
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TCCTATTTTGGAACTGTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAG 904
Query 851 AAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTATTCGACCTGATTTCTTTCG-- 908
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 905 AAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTACTCGACCTGATCTCTTTCGTT 964
Query 909 A---GA-TTTGAACCCGAGGGGTGACACAATAGCTTACATGTTTTGGTCTCTTTCAAGTA 964
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 965 ATACGAGTTTGAACCCGAGGGGTGACACAATAGATTACATGTTTTGGTCTCTTTCAAGTA 1024
Query 965 CTTCTTGTATTCATT-ACTTT-GTAAATGTCATATTCTAAGTAACCTAAGTTTAAGATTT 1022
|||||||||||| || ||||| |||||| |||||||||||| |||||||||| |||||||
Sbjct 1025 CTTCTTGTATTC-TTGACTTTTGTAAATATCATATTCTAAGCAACCTAAGTTGAAGATTT 1083
Query 1023 GTTT 1026
||||
Sbjct 1084 GTTT 1087
Score = 171 bits (92), Expect = 1e-41
Identities = 123/137 (90%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 1 GCTCGCTTACCCT-TGACTAACGTATAAAATCCTGAAACCGAACTAATTTTCTCAAAAGT 59
|||||||| ||| |||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1 GCTCGCTT-TCCTCTGACTAACGTATAAAATCCTCAAACCAAACTAATTTTCTC-AAAGT 58
Query 60 TTCTCGATCATTTTCCGGGAAAATTTACAGACGAGAAAATAA-AACATTTGGAATCTGCT 118
||| | ||||||||||||||||||||||||||||||||| || || |||| ||| | |||
Sbjct 59 TTCCCAATCATTTTCCGGGAAAATTTACAGACGAGAAAACAAGAA-ATTTAGAAGCAGCT 117
Query 119 ACATTCCTCATAAATGG 135
|||||||||||||||||
Sbjct 118 ACATTCCTCATAAATGG 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5