BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67540.2 Length=1153 Score E Sequences producing significant alignments: (Bits) Value Ahg475858 jgi|Araly1|475858|fgenesh2_kg.2__988__AT1G67540.1 1279 0.0 > Ahg475858 jgi|Araly1|475858|fgenesh2_kg.2__988__AT1G67540.1 Length=1152 Score = 1279 bits (692), Expect = 0.0 Identities = 836/904 (92%), Gaps = 15/904 (2%) Strand=Plus/Plus Query 134 GGAGCAACCGGCGAGAAGGAGGCCGCGACGTCGTCCTCTTGAGACTTGTGGTGGTGTAAT 193 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 188 GGAGCAACCAACGAGAAGGAGGCCACGACGTCGTCCTCTTGAGACTTGTGGTGGTGTGAT 247 Query 194 ACTCTCCATGACTCGTGTTCTTTACACAAGAAGCCAGACTCTGATGAAGAAGAAGAAGAA 253 |||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||| Sbjct 248 ACTCTCCATGGCTCGTGTTGTATACACAAGAAGCCAGACTC---TGAAGAAGAAGAAGAA 304 Query 254 TCTATCCTCTTGGCTATTGAGGAAACTCTTTGAATTCGTTATCTTCTTTGTTTCGATGAC 313 |||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 305 TCTAGCCTCGTGGCTATTGCGGAAACTCTTCGAATTCGTTATCTTCTTTGTTTCGATGAC 364 Query 314 AAGTCCGTTTCATCGTCATTTTCTCGCGGTTCTCTCTGTAGCTGACGATCATATACTCGC 373 ||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||||| Sbjct 365 AAGTCCGTTTCATCGCCATTTTCTCGCGATTCTCTCTGTAGCTGACGATCACATTCTCGC 424 Query 374 GTTACAAGACGCAATCGAGACTTACTTCCCTTCTTCAAGCAATGTGTTTGTTAAGATCTT 433 ||| |||||||| || |||||||||||||||||||| ||| |||||| || |||||||| Sbjct 425 GTTGCAAGACGCGATTGAGACTTACTTCCCTTCTTCCAGCTTTGTGTTCGTCAAGATCTT 484 Query 434 TGATTTGTTGATCATTGTAGAGACTCTGCCAGAGAAACTTGATGGAGTGCTCAAGAAACT 493 |||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||| Sbjct 485 CGATTTGCTGATCATTGTAGAGACTCTGCCAGAGAAATTTGATGGATTTCTCAAGAAACT 544 Query 494 TCCGAGTTTGATGAGCCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGTTATTTCTAG 553 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 545 TCCGAGTTTGATGAACCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGCTATTTCTTG 604 Query 554 GCTTGGTTTGTTGGTGAACGTGTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAATGA 613 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 605 GCTTGGTTTGTTGGTGAACGTTTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAAGGA 664 Query 614 GAAAGAGATCACAGTTGATAGGAGCTTTAGCAGATCAGGGTCAGTTTCAGAAG-AG--GA 670 |||||||||||| || ||||||||||||||||||||||| ||||||||||||| || || Sbjct 665 GAAAGAGATCACGGTCGATAGGAGCTTTAGCAGATCAGGATCAGTTTCAGAAGAAGAAGA 724 Query 671 GGAAGAGAAGAGGAATTTGGGGACGGAGAAGAAAGTGTCGTACAAGGAGGCATTACAGAG 730 ||||||||||| ||| || ||||| |||||||||||||||||||| |||||||||||||| Sbjct 725 GGAAGAGAAGACGAAATTCGGGACAGAGAAGAAAGTGTCGTACAAAGAGGCATTACAGAG 784 Query 731 AGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGAAGCAGCAGTAGCCGCAGAGA 790 ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| Sbjct 785 AGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGCAGCAGCAGCAGCCGCGGAGA 844 Query 791 TCCGATCTTGGAACTCTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAG 850 ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 TCCTATTTTGGAACTGTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAG 904 Query 851 AAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTATTCGACCTGATTTCTTTCG-- 908 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 905 AAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTACTCGACCTGATCTCTTTCGTT 964 Query 909 A---GA-TTTGAACCCGAGGGGTGACACAATAGCTTACATGTTTTGGTCTCTTTCAAGTA 964 | || |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 965 ATACGAGTTTGAACCCGAGGGGTGACACAATAGATTACATGTTTTGGTCTCTTTCAAGTA 1024 Query 965 CTTCTTGTATTCATT-ACTTT-GTAAATGTCATATTCTAAGTAACCTAAGTTTAAGATTT 1022 |||||||||||| || ||||| |||||| |||||||||||| |||||||||| ||||||| Sbjct 1025 CTTCTTGTATTC-TTGACTTTTGTAAATATCATATTCTAAGCAACCTAAGTTGAAGATTT 1083 Query 1023 GTTT 1026 |||| Sbjct 1084 GTTT 1087 Score = 171 bits (92), Expect = 1e-41 Identities = 123/137 (90%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 1 GCTCGCTTACCCT-TGACTAACGTATAAAATCCTGAAACCGAACTAATTTTCTCAAAAGT 59 |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 1 GCTCGCTT-TCCTCTGACTAACGTATAAAATCCTCAAACCAAACTAATTTTCTC-AAAGT 58 Query 60 TTCTCGATCATTTTCCGGGAAAATTTACAGACGAGAAAATAA-AACATTTGGAATCTGCT 118 ||| | ||||||||||||||||||||||||||||||||| || || |||| ||| | ||| Sbjct 59 TTCCCAATCATTTTCCGGGAAAATTTACAGACGAGAAAACAAGAA-ATTTAGAAGCAGCT 117 Query 119 ACATTCCTCATAAATGG 135 ||||||||||||||||| Sbjct 118 ACATTCCTCATAAATGG 134 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43002650376 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5