BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67570.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908315 jgi|Araly1|908315|Al_scaffold_0002_1396 2012 0.0
> Ahg908315 jgi|Araly1|908315|Al_scaffold_0002_1396
Length=1359
Score = 2012 bits (1089), Expect = 0.0
Identities = 1280/1372 (93%), Gaps = 14/1372 (1%)
Strand=Plus/Plus
Query 159 ATGGAGAGTCAGCAACAACAATCACCGGCCGTTGAAACGCCTTTGTTGCTCAATTCTAAT 218
||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 1 ATGGAGAGTCATCAACAACAATCACCGGCCGTTGAAACGCCGTTGTTGATCAATTCAAAT 60
Query 219 CAGGATCATCAAGACCGACCTTCGCCGGAAATCGACGGCGGCGGTGGCGGCGGAGGAGGA 278
|||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 61 CAGGATCATCGAGAACGACCTTCGCCGGAAATCGA------------CGGCGGAGGAGGA 108
Query 279 GAAGGTGTTAACGACGATCTAGACCGAACGCTAGAATGGTTAGAGACGTTTTTGACGCTC 338
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 109 GAAGGTGTTAACGACGATCTAGACCGAACGCTGGAATGGTTAGAGACGTTTCTGACGCTT 168
Query 339 CTTGGGTTTAATCAATCGTCTAAACAAAGCCTTGTTCTGTCTTGGATCGTGTTTTTATCG 398
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||
Sbjct 169 CTTGGGTTTAATCAATCGTCTACACGAAGCCTTGTTTTGTCTTGGATCGTGTTTTTAGCG 228
Query 399 ATTGGTTTGGTGCTTCCGGTGACAGTGTTGGAGCTAGGTCATTGTTTAGGGTGTGAGAGA 458
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 229 ATTGGTTTGGTGCTTCCGGTTACAGTGTTGGAGTTAGGGCATTGTTTAGGGTGTGAGAGA 288
Query 459 TATCAGTACAAGAGTTTCGAGCTCAACATCGTTGTTTCGCAGGCGTTGTTAGCTGGTGTT 518
||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct 289 TATCAATACAAGAGTTTTGAGCTCAATATCGTTGTTTCGCAAGCATTGTTAGCTGGTGTT 348
Query 519 TCTCTGCTTTGCGTTTCTCATAATTTGAGAAAACATGGGATTCGAAAGTTTTTGTTTGTT 578
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 349 TCTCTGCTTTGCGTTTCTCATAATTTGAGAAAACATGGAATTAGAAAGTTTTTGTTCGTT 408
Query 579 GATCAACTTAGTGGTCGAATGGATCGTCTCAAAGCTCAATACATTCAA-CAAATCTTGAA 637
|||||||||||||||||||||| ||| |||||||||||||| ||| || ||||||| |||
Sbjct 409 GATCAACTTAGTGGTCGAATGGGTCGGCTCAAAGCTCAATATATT-AAGCAAATCTCGAA 467
Query 638 CTCTGTAAGATTGCTTGCAGTTTGGTCACTTCCATGTTTTGCTTTGAAGGGTGTTCGTGA 697
|||||| || ||||||||||||||||| || ||||||||||| ||||| | | |||||||
Sbjct 468 CTCTGTGAGGTTGCTTGCAGTTTGGTCGCTGCCATGTTTTGCGTTGAAAGCTATTCGTGA 527
Query 698 GATCATCAGAATGTATTATGTGCCTCATGACCAGCCATGGTTATCTGTTGCAATTCTCTT 757
||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 528 GATCATCCGAATGTATTATGTGCCTCATGACCAGGCGTGGCTATCTGTTGCAATTCTCTT 587
Query 758 GTCTATGATCTTGTCGTGGACTTACTTAAGCACTATCTTTCTAGCTGCAAGTGCTATGTT 817
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 588 GTCTATGATCTTGTCATGGACTTACTTAAGCACTATATTTCTAGCTGCAAGTGCCATGTT 647
Query 818 TCATTTAGTATGTAACTTGCAAGTTATTCACTTTGAAGATTATGCAAAGCTTTTAGAAGG 877
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 648 TCATTTAGTTTGTAACTTGCAAGTGATTCACTTTGAAGATTATGCAAAGCTCTTAGAAGG 707
Query 878 GGAGTCTGAAATCTCTCTTTTCATCTATGAGCATATGCGTTTGCGTCATTATCTTTCGAA 937
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 708 GGAGTCTGAAATCTCCCTTTTCATCTACGAGCATATGCGTTTGCGTCATTATCTTTCCAA 767
Query 938 AATAAGCCATAGGTTCCGCATCTTTCTGCTTCTACAGTTTCTGGTTGTCACAGCTAGCCA 997
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 768 AATAAGCCATAGGTTCCGCATCTTTCTGCTTTTACAGTTTCTGGTTGTCACAGCTAGCCA 827
Query 998 GTTTACTACGCTTTTTCAGACCACTGCGTATAGTGGGCGTATCACTTATATAAACGGTGG 1057
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 828 GTTTACTACGCTTTTCCAGACCACTGCGTATAGCGGGCGTATCACTTATGTAAATGGTGG 887
Query 1058 TGATTTTGCAGTCTCTGCGGTTGTCCAAGTTGTTGGAATCATTTTGTGTCTACACGCAGC 1117
||||||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||
Sbjct 888 TGATTTTGCGGTCTCGGCTGTGGTCCAAGTTGTTGGAATCATTCTGTGTCTGCATGCAGC 947
Query 1118 AACAAAAATATCACACAGAGCTCAAGCAATAGCATCAGTTGCAAGTAGATGGCATGCGAT 1177
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AACAAAAATATCTCATAGAGCTCAAGCAATAGCATCAGTTGCAAGTAGATGGCATGCGAT 1007
Query 1178 GATGTCTTGCTCGTCTACAGATTCAACTCAGATAAGGGCATCTCCTAGTGGAGTTCATTT 1237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1008 GATGTCTTGCTCGTCTACAGATTCAACTCAGATAAGGACATCTCCTAGTGGAGTTCACTT 1067
Query 1238 GGAGGCTACCACGAATCCGCCCATCTCCTTTCCGATTTCCCGTTCAGATAGTGATGTGGA 1297
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1068 GGAGGCCACCACGAATCCACCCATCTCCTTTCCGATTTCCCGTTCAGATAGTGATGTAGA 1127
Query 1298 ATCAATGGATCACTACATGAGGATGCCTGTTACTAACCAGTTTCCTTCTTATATGTCCAT 1357
||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1128 ATCCTTGGATCACTACATGAGGATGCCTGCTACTAACCACTTTCCTTCTTACATGTCCAT 1187
Query 1358 GTCCTCATATCACAAACGACAAGCTTTCGTGTTGTATTTGCAGATGAATCCAGGCGGGAT 1417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GTCCTCATATCACAAAAGACAAGCTTTCGTGTTGTATTTGCAGATGAATCCAGGCGGGAT 1247
Query 1418 AACGATATTCGGGTGGACAGTAGACAGGCATTTGATAAACACAATATTCTTCATTGAGCT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1248 AACGATATTCGGGTGGACAGTAGACAGGCATTTGATAAACACAATATTCTTCATTGAACT 1307
Query 1478 CTCTCTAGTTACTTTTGTACTCGGCAAGACTGTAGTTTTCGGTACTGAATGA 1529
||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1308 CTCTCTAGTTACTTTTGTACTTGGCAAGACTGTGGTTTTCGGTTCTGAATGA 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5