BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67590.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475861 jgi|Araly1|475861|fgenesh2_kg.2__991__AT1G67590.1 1834 0.0
> Ahg475861 jgi|Araly1|475861|fgenesh2_kg.2__991__AT1G67590.1
Length=1251
Score = 1834 bits (993), Expect = 0.0
Identities = 1189/1277 (93%), Gaps = 39/1277 (3%)
Strand=Plus/Plus
Query 1 TTAATGTCACATTTCTGAAATCTCTCAACTTCATCATCAAGTGGGTTCCTATGAGAGTGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAATGTCACATTTCTGAAATCTCTCAACTTCATCATCAAGTGGGTTCCTATGAGAGTGA 60
Query 61 CGACTCTTTGATTGCTTCGCCACATCTTTTATTTTTATCCTTCTAAGTCATTTCTCTATC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CGACTCTTTGATTGCTTCGCCACATCTTTTATTATTATCCTTCTAAGTCATTTCTCTATC 120
Query 121 TATCCATATAGATAAAAACCTTCTAATAGATCTCTGTGTCATTTTATTCGTAAGAATGAG 180
||||| || | | ||||||||| || | ||||||||||||||
Sbjct 121 TATCC------AT----A-----T-ATAGATCTC--TG------T-TTCGTAAGAATGAG 155
Query 181 ATCTAGTGTAGAAGATAACAAAGGATGGATAGGACCAGCGACACCGGAGATATCGAACGG 240
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 156 ATCTAGTGTTGAAGATAACAAAGGATGGATAGGACCAGCAACACCGGAGATATCGAACGG 215
Query 241 TTTTGAGTTTCAGAAAGGTTCGAACCGGACACCAAACCATCACCGGTCTACTATGGGGAA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 216 TTTTGAGTTTCAGAAAGGTTCTAACCGGACACCAAACCATCACCGGTCTACTATGGGGAA 275
Query 301 GCCAGCGCCGTCAAAATGGGACGATGCTCAGAAATGGCTTTCTGGTGTAGGGTTTGCTCG 360
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GCCTGCACCGTCAAAATGGGACGATGCTCAGAAATGGCTTTCTGGTGTAGGGTTTGCTCG 335
Query 361 TGGAGGTGGTGGAGGTGGTGACAAGAGTA---GTCATCACTCAAGAAGTAATAAGCCGAG 417
||||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||
Sbjct 336 TGGAGGTGGTGGAGGTGGTGAGAAGAGTAGTCGTCATCACTCTAGAAGTAATCAGCCGAG 395
Query 418 AAACTCGAACGCGGATGATCTTAGACTTATAGCTTCAGCTTCACAGAGAGAACGTGAAGG 477
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 396 AAACTCTAACGCTGATGATCTTAGACTTATAGCTTCAGCTTCACAAAGAGAACGTGAAGG 455
Query 478 AGAAGATCAGTACGTTGAGTATGATGATGAAGAGATGGCGGCGGGAAGACCGGAGGTTGA 537
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 456 AGAAGATCAGTATGTTGAGTATGATGATGAAGAGATGGCTGCGGGAAGGCCGGAGGTTGA 515
Query 538 GACGAAGAATGTTGATTGTGGTGAATCTGTTTGGAGGAAAGAAAGTAGTATTAATCCAAC 597
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 516 GACGAAGAATGTTGATTGTGGTGAATCGGTTTGGAGGAAAGATAGTAGTATTAATCCAAC 575
Query 598 GGCTGTGATTAGATCCGTTTGTGTGAGAGATATGGGGACTGAGATGACTCCTATTGGTAG 657
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 576 GGCTGGGATTAGATCGGTTTGTGTGAGAGATATGGGGACTGAGATGACTCCTATTGGGAG 635
Query 658 TCAAGAGCCTTCTAGAACAGCTACACCGGTGCGAGCTACTACACCGGTTGGGAGGAGTCC 717
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 636 TCAAGAGCCTTCTAGAACAGCTACACCGGTGCGAGCTACTACGCCGGTTGGGAGAAGTCC 695
Query 718 TGTGACTTCACCGGTGAGGGCTTCACAACGTGGTGAGGCGGTGGGGGTTGTGATGGAGAC 777
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||| |
Sbjct 696 TGTGACTTCACCGGTGAGGGCTTCGCAACGCGGTGAGGCGGTGGGGATTGTGACGGAGCC 755
Query 778 GGTGACGGAGGTTAGGAGGGTAGAGAGTAATAATAGTGAGAAG-GTTAATGGTTTTGTGG 836
|||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||
Sbjct 756 TGTGATGGAGGTTAGGAGGGTAGAGAGTAATAATAATGAGAAGAG-TAATGGTTTTGGGG 814
Query 837 AGAGTAAGAAGGCTATGAGTGCTATGGAAGCTCGAGCCATGGCTTGGGATGAAGCAGAAC 896
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 815 AGAGTAAGAAGGCGATGAGTGCGATGGAAGCTCGAGCTATGGCTTGGGATGAAGCAGAAC 874
Query 897 GTGCTAAATTCATGGCTAGGTATAAGAGAGAGGAAGTGAAGATACAAGCTTGGGAGAATC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GTGCTAAATTCATGGCTAGGTATAAGAGAGAGGAAGTGAAGATACAAGCTTGGGAGAATC 934
Query 957 ACGAGAAGAGAAAGGCTGAGATGGAGATGAAGAAAATGGAGGTGAAGGCGGAGAGGATGA 1016
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 ATGAGAAGAGAAAGGCAGAGATGGAGATGAAGAAAATGGAGGTGAAGGCGGAGAGGATGA 994
Query 1017 AAGCAAGGGCAGAGGAGAAGTTGGCCAACAAGCTAGCTGCGACGAAAAGGATAGCGGAAG 1076
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 995 AAGCAAGGGCAGAGGAGAAGCTGGCCAACAAGCTAGCGGCGACGAAAAGGATAGCGGAAG 1054
Query 1077 AGAGGAGGGCGAATGCGGAGGCTAAGTTAAACGAAAAGGCGGTGAAGACATCGGAGAAAG 1136
|||||||||| || |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1055 AGAGGAGGGCAAACGCGGAGGCGAAACTAAACGAAAAGGCGGTGAAGACATCGGAGAAAG 1114
Query 1137 CTGATTATATAAGGAGGAGTGGTCACTTGCCTTCTTCTTTTTCTTTCTCCTTTAAGCTTC 1196
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1115 CCGATTATATAAGGAGAAGTGGTCACTTGCCTTCTTCTTTTTCTTTCTCATTTAAGCTTC 1174
Query 1197 CCTCTCGTTGTTGGTGTCAATAATTGTCTATTTTCATTA---------GAATGTAATCGT 1247
||||||| |||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1175 CCTCTCGCTGTTGGTGTCAATAATCGTCTATTCTCATTATTTTCTTTAGAATGTAATCGT 1234
Query 1248 ATGGATTTAGTGATATT 1264
|||||||||||||||||
Sbjct 1235 ATGGATTTAGTGATATT 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5