BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67600.1

Length=977
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315776 jgi|Araly1|315776|fgenesh1_pm.C_scaffold_2000809           765    0.0  


> Ahg315776 jgi|Araly1|315776|fgenesh1_pm.C_scaffold_2000809
Length=492

 Score =  765 bits (414),  Expect = 0.0
 Identities = 466/492 (95%), Gaps = 0/492 (0%)
 Strand=Plus/Plus

Query  208  ATGGAGGAATCGGTGGCTTCATCTTCCTCGCACTATATCTCAATTTTCACAAATTACCCT  267
            |||||  || |||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct  1    ATGGATCAACCGGTGGCTTCATCTTCGTCACACTATATCTCAATTTTCACAAATTTCCCT  60

Query  268  CTGATTTCCGCCGTTTTAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGG  327
            ||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTGATTTCATCCCTTCTAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGG  120

Query  328  TATAAAGAAAGGAGATGGGATTTGAAACGGCTTGTTGGGTCTGGAGGTATGCCTTCATCA  387
            ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct  121  TATAAAGAAAGGAGATGGGATTTGAAACGACTTGTTGGGTCTGGAGGAATGCCTTCGTCA  180

Query  388  CATTCAGCAACGGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGTTTTGGTGGT  447
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  181  CATTCAGCAACAGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGCTTTGGTGGA  240

Query  448  TCACATTTCGCTATCGCTTTGGTTCTCACTACCATTGTTATGTATGATGCAACTGGTGTA  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCACATTTCGCTATCGCTTTGGTTCTCACTACCATTGTTATGTATGATGCAACTGGTGTA  300

Query  508  AGGTTACATGCTGGACGCCAAGCTGAGGTTCTAAATCAGATTGTGTATGAACTTCCTGCA  567
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  301  AGGTTACATGCTGGCCGCCAAGCTGAGGTTCTTAATCAGATTGTGTATGAACTTCCTGCA  360

Query  568  GAGCATCCTCTGGCTGAAACCAGACCTTTGCGTGAACTTCTAGGTCATACTCCTCCCCAG  627
            ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct  361  GAGCATCCTCTGGCTGAAAGCAGACCGTTGCGTGAACTTCTAGGTCATACTCCTCCACAG  420

Query  628  GTTATTGCTGGTGGAATGCTTGGAATATCTACAGCAGTTGTTGGGTACTTAGTCATCTTG  687
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  421  GTCATTGCTGGTGGAATGCTTGGAATATCCACAGCAGTTGTTGGGTACTTAGTCATCTTG  480

Query  688  TTAGCCAAGTAG  699
             || | ||||||
Sbjct  481  ATAACAAAGTAG  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36293016984


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5