BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67600.1 Length=977 Score E Sequences producing significant alignments: (Bits) Value Ahg315776 jgi|Araly1|315776|fgenesh1_pm.C_scaffold_2000809 765 0.0 > Ahg315776 jgi|Araly1|315776|fgenesh1_pm.C_scaffold_2000809 Length=492 Score = 765 bits (414), Expect = 0.0 Identities = 466/492 (95%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 208 ATGGAGGAATCGGTGGCTTCATCTTCCTCGCACTATATCTCAATTTTCACAAATTACCCT 267 ||||| || |||||||||||||||| || ||||||||||||||||||||||||| |||| Sbjct 1 ATGGATCAACCGGTGGCTTCATCTTCGTCACACTATATCTCAATTTTCACAAATTTCCCT 60 Query 268 CTGATTTCCGCCGTTTTAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGG 327 |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTGATTTCATCCCTTCTAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGG 120 Query 328 TATAAAGAAAGGAGATGGGATTTGAAACGGCTTGTTGGGTCTGGAGGTATGCCTTCATCA 387 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 121 TATAAAGAAAGGAGATGGGATTTGAAACGACTTGTTGGGTCTGGAGGAATGCCTTCGTCA 180 Query 388 CATTCAGCAACGGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGTTTTGGTGGT 447 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 CATTCAGCAACAGTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGCTTTGGTGGA 240 Query 448 TCACATTTCGCTATCGCTTTGGTTCTCACTACCATTGTTATGTATGATGCAACTGGTGTA 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCACATTTCGCTATCGCTTTGGTTCTCACTACCATTGTTATGTATGATGCAACTGGTGTA 300 Query 508 AGGTTACATGCTGGACGCCAAGCTGAGGTTCTAAATCAGATTGTGTATGAACTTCCTGCA 567 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 AGGTTACATGCTGGCCGCCAAGCTGAGGTTCTTAATCAGATTGTGTATGAACTTCCTGCA 360 Query 568 GAGCATCCTCTGGCTGAAACCAGACCTTTGCGTGAACTTCTAGGTCATACTCCTCCCCAG 627 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| Sbjct 361 GAGCATCCTCTGGCTGAAAGCAGACCGTTGCGTGAACTTCTAGGTCATACTCCTCCACAG 420 Query 628 GTTATTGCTGGTGGAATGCTTGGAATATCTACAGCAGTTGTTGGGTACTTAGTCATCTTG 687 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 GTCATTGCTGGTGGAATGCTTGGAATATCCACAGCAGTTGTTGGGTACTTAGTCATCTTG 480 Query 688 TTAGCCAAGTAG 699 || | |||||| Sbjct 481 ATAACAAAGTAG 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36293016984 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5