BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67620.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475863 jgi|Araly1|475863|fgenesh2_kg.2__993__AT1G67620.1 876 0.0
> Ahg475863 jgi|Araly1|475863|fgenesh2_kg.2__993__AT1G67620.1
Length=729
Score = 876 bits (474), Expect = 0.0
Identities = 597/651 (92%), Gaps = 29/651 (4%)
Strand=Plus/Plus
Query 4 TTAGCTAATGTTGACGA-CTCTTCGATCTCGTTGTTCGTCTCTTCTTCTAAATCAATCAT 62
||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 1 TTAGCTAATGTTGAC-AGCTCTCCGATCTCGTTGTTCGTCTCTTCTTCTAGATCAATCGT 59
Query 63 GGAAGCTA-G--------CTCCCAATCGCATCTTCGCTTCCTCTCCCTCTTTTTCTTCAT 113
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGAAGCTAGGTTTAACAACTCCCAATCGCATCTTCGCTTCCTCTCCCTCTTTTTCTTCA- 118
Query 114 CCGCCGGGATCTCTAATGTCTCAGA-GATTCTCACACTTCCCGAAGTGGAGAAGATTCTC 172
|||||| |||||||||| | |||| |||||||||||||| |||||||| |||
Sbjct 119 --------ATCTCTGATGTCTCAGACG-TTCTTACACTTCCCGAAGTTGAGAAGATACTC 169
Query 173 GCCGACGTGAAAGCTGATAACGTGACTGTGATTCCTACACATAATCATTGTTTCTGGGCT 232
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 170 GCCGACGTTAAAGCTGATAACGTGACTGTGATTCCTACACATAATCACTGTTTCTGGGCT 229
Query 233 GATTTCACTGTCATCGCCACCGGTAGATCCGATTGGCACTTAAGAAACATCGCTCAAGCT 292
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 230 GATTTCACGGTCATCGCCACCGGAAGATCCGATTGGCACTTAAGAAACATCGCTCAAGCA 289
Query 293 TTAGTTTATAGGGCCAAGCAAAAGCAGAAAGGAGCTAAACATGTAATGTTACCTTCTGTG 352
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 290 TTAGTCTATAGGGCCAAGCAAAAGCAGAAAGGAGCTAAACATGTAATGCTACCTTCTGTG 349
Query 353 CAAGGGTACAATAGCAAGTGGATTGTCATAGACTACGGAAAGTTTGTAGTCCATGCACTT 412
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 350 CAAGGGTACAATAGCAAGTGGATTGTCATTGACTACGGAAAGTTTGTAGTCCATGCACTT 409
Query 413 GATGAGAAAGCCAGAGGTTATTTCAATTTGGAAAGCCTTTGGTCTGCTGAATCCTCTGGT 472
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 410 GATGAGAAAGCCAGGGGTTATTTCAATTTGGAAAGTCTTTGGTCTGCTGAATCATCTGCT 469
Query 473 ACTGATACTTCAGATCAGGATCTCCAAAACGTTTTTGTAAAGGTCCGACCAAAGAACAAT 532
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 470 ACTGATACTTCAGATCAGGATCTCCAAAACGCTTTTGTAAAGGTCCGACCTAAGAACAAT 529
Query 533 TCGAAAAGGAAACCGGCTAAAGTGAGTTCTTGATCCTGTCCGATGGA--TACAATTTCTC 590
||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| ||
Sbjct 530 TCGAAAAGGAAACCGGCTAAAGTGAGTTCTTGATCATGTACGATGAACATACAATTTGTC 589
Query 591 ATAAACTTCTCGAGTCTAGAC-GAGTTAAGAATAGGAGGATTTTAAAGCCT 640
||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 590 ATAAACTTCTCGAGTCTAGACCG-GTTAAGAATAGGA---TTTTAAAGCCT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5