BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67623.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926022 jgi|Araly1|926022|scaffold_201583.1 800 0.0
> Ahg926022 jgi|Araly1|926022|scaffold_201583.1
Length=787
Score = 800 bits (433), Expect = 0.0
Identities = 637/731 (87%), Gaps = 31/731 (4%)
Strand=Plus/Plus
Query 5 TGGTATCCTTGTCTTT-GCATGCGTCTTCTTCTATTAGGA--AA-TCGAAAACAAAAGCA 60
||||||||| | ||| || | |||||||||||||||||| || || ||| |||| ||
Sbjct 22 TGGTATCCTCCT-TTTCGCCTTCGTCTTCTTCTATTAGGAGGAAGTC-TAAA-AAAA-CA 77
Query 61 AG-CTTATGTCTCGATTCTTTACCAGAAGATCTTCTCGTGGAGATTTCTTCATGTACCGG 119
|| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 78 AGAATT-TGTCTCGATTCTTTACCAGAAGATCTTCTTGTGGAGATTTCTTCATGCACCGG 136
Query 120 AGCTTCTTCCTTGTCAGCGGTTCGTAATCTCAGACTAGTTTCGAAATCGTTTCGACGTAT 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 137 AGCTTCTTCCTTGTCAGCGGTTCGTAATCTCAGAGTAGTTTCGAAATCGTTTCGACGTAT 196
Query 180 CTGTGATGAAA-AGTATGTTTTCTACCGACTATCCCTCAAAGAAATCGAATT-TCTCCCA 237
|||||||||| | || |||||||||||||| ||||||||||||||||| || || |||
Sbjct 197 CTGTGATGAACGA-TACGTTTTCTACCGACTTTCCCTCAAAGAAATCGA-TTATCCCCCT 254
Query 238 TGGCATGAGAACAGTGCAAAATT-CATCGAGAGATGTAC-CGAGAGTAGAAACCCCGAAG 295
|||||| ||||||||| || ||| | ||||||||||| | | | ||| ||||||||||||
Sbjct 255 TGGCATCAGAACAGTG-AATATTTCTTCGAGAGATGT-CGCAATAGTGGAAACCCCGAAG 312
Query 296 CGTTGTTTCAG-AAAGGATTCATTAACTATTTTCGAGATAAACTTCAAGACCGA-GGACT 353
|||||| || | ||||||||||| ||||| ||||||||||| ||| || || || |||||
Sbjct 313 CGTTGTATC-GCAAAGGATTCATGAACTACTTTCGAGATAATCTTAAACAC-GAAGGACT 370
Query 354 CGAATATTTAGCTGAAGCTGCGGAAAAAGGTATCAAAGAAGCAAAATATGTCTACGGGGT 413
| |||||||||||||||||||||||||||| | || ||||||||| |||||||||||| |
Sbjct 371 CAAATATTTAGCTGAAGCTGCGGAAAAAGGAAACAGAGAAGCAAATTATGTCTACGGGTT 430
Query 414 GATTCTAATCTGTCTTGGAGGCAAAACAAAACAAAAGGGTTTCGA-GATCTTGTCTTCTG 472
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 431 GATTCTAATCTGTCTTGGAGACAAAACAAAACAAAAGGGTTT-GAAGATCTTGTCTTCTG 489
Query 473 TTATAAAGCAGTTGATGTCAACTACAATGAATGAGTTGGTGGAATTTCGATACAAGATTC 532
||||||||| ||||||||||||||||||| | ||| |||||||| ||||||||||||||
Sbjct 490 TTATAAAGCCGTTGATGTCAACTACAATGGAGGAGCTGGTGGAACTTCGATACAAGATTA 549
Query 533 AAAAGATTAGATAC-G-GTTTTTGGTGGTCTGACAACACGGTGGTGGAACAACTCAAAAC 590
||||||||||| || | ||||| | ||| || ||||| ||||| |||||| |||||||||
Sbjct 550 AAAAGATTAGAGACAGCGTTTT-G-TGGCCTAACAACCCGGTGATGGAACGACTCAAAAC 607
Query 591 AGCCTACGTTAGTGAGAAGTGCAAGTGCGATTGTAAAACCAGGATGTTATTATTAGTAAT 650
|| |||||| | ||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 608 AGTGTACGTTCGAGAGAAGTGCGAGTGCGATTGTAAAACCAGGATGTTACTA---GTAAG 664
Query 651 GAATCGTGGTTGGTATTTATTCGGTGATGAAACCGACTTGGATTTTTCTTCTGCTTGTGA 710
||||| ||||||| || || ||||||||| |||||| || || ||||||||||||||||
Sbjct 665 GAATCATGGTTGGCATCGATACGGTGATGACACCGACATGAATATTTCTTCTGCTTGTGA 724
Query 711 GTTATATCTGT 721
||| | |||||
Sbjct 725 GTTTTGTCTGT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5