BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67630.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475864 jgi|Araly1|475864|fgenesh2_kg.2__994__AT1G67630.1 3153 0.0
> Ahg475864 jgi|Araly1|475864|fgenesh2_kg.2__994__AT1G67630.1
Length=2062
Score = 3153 bits (1707), Expect = 0.0
Identities = 1910/2009 (95%), Gaps = 10/2009 (0%)
Strand=Plus/Plus
Query 100 GAGAGTGAAGTTGAAAGA-AAATGGCTACAGATGAGGAAATAAAGAACGAGTTTAAAAGA 158
|||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 60 GAGAGTGAAGTTGAAAGAGCGATGGCTACAGATGAGGAAATAAAGAATGAATTCAAAAGA 119
Query 159 AGCGGCTTTATTCTTGTGGAAGAAGACGAGATTCTTAAGAGATGTGTTACTCTCTGCATA 218
|||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 120 AGCGGCTTTACTCTTGTCGAAGAAGACGATATTCTTAAGCGATGTGTTACTCTCTGCATA 179
Query 219 AATTACAGTCTTAAGCCTTCTGATCTTGTTTCAAGTTGGGAACTTTATCATCTCAATCGA 278
|| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AACTACAGTCTCAATCCTTCTGATCTCGTTTCAAGTTGGGAACTTTATCATCTCAATCGA 239
Query 279 CAACTTCTTGATCAAACTGTTAAGAAAGATGACATGGATGGGTTTGTA-TTGCATCTTCA 337
||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||
Sbjct 240 CAACTTCTTGATCAAACTGTTAAGAAAGACGAGATGGATGGGTTTGTACTT-CATCTTCA 298
Query 338 GAATGAACAGAAAGAATCTATTATGAGAGTGGAAGAAGCTGGTCTGCATCTTTACTCAAA 397
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 299 GAACGAACAGAAAGAATCTATTATGAGAGCGGAAGAAGCTGGTCTGCATCTTTACTCGAA 358
Query 398 TAGAGATGTAGATATGCTTTTGGATGGGGTGCAAGAAGATACGGAAGAGATTGTTACTAC 457
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 TAGAGATGTAGATATGCTTTTGGATGGTGTGCAAGAAGATACGGAAGAGATTGTTACTAC 418
Query 458 TCCTACAAACAAGTCTCAACGGTTACATCCGGATCCGTTTGATTCGATAAGTAGATCAAG 517
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 419 TCCTACAAACAAGTCTCAACGGTTACATCCTGATCCGTTTGATTCGATAAGCAGATCAAG 478
Query 518 AGATTATGGCTATTCTACTGGGAAGTCAGTTGGACATGTGACACCTTTTGGGTCACGAAT 577
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGATTACGGTTACTCTACTGGGAAGTCAGTTGGACATGTGACACCTTTTGGGTCACGAAT 538
Query 578 CGAGAAGTTTGTGGTGAAGTTCAATGTGGGTAATGTGGCGGCACATGCAGAGAATGGAAA 637
||| ||||||||||||||||| || || ||||||||||| | | |||||||||||||||
Sbjct 539 CGAAAAGTTTGTGGTGAAGTTTAACGTTGGTAATGTGGC-TC-C-TGCAGAGAATGGAAA 595
Query 638 CAACAATGATG-TAGAAAACAGTGAGGATGATATCATTAAGAGAGTTCAAACCAGCCAGC 696
|| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 CAGCAATGA-GATAGAAAACAGTGAGGATGATATTATTAAGAGAGTTCAAACCAGCCAGC 654
Query 697 GGTGTTCTCTAAAAGTCAATGGCTCAGGCCCTGAACCAGGTTGCAGGTTCATGTATGACA 756
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGTGTTCTCTAGAAGTCAATGGCTCAGGCCCTGAACCAGGTTGCAGGTTCATGTATGACA 714
Query 757 GAACTGAGGACAGGTTTAGTGCACTCGAGTATCGGATCGTAAGGCATGCAGATGCATTTG 816
|||||||||||||||||| |||||||||| ||||||| || ||||| |||||||| ||||
Sbjct 715 GAACTGAGGACAGGTTTAATGCACTCGAGAATCGGATTGTTAGGCACGCAGATGCGTTTG 774
Query 817 CTGCCTCGGGATTATATGAGGAACAGGTGGATCCGGCTGTTGCTTCACAGAGAAGTATAT 876
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 775 CTGCCTCAGGATTATATGAGGAACAAGTGGATCCAGCTGTTGCTTCACAGAGAAGTATAT 834
Query 877 TTGCTGTGGGAATGATTTGCTGTGATGGAGAGGGGCATTTGAATGATAAGTCCATTCTAT 936
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 835 TTGCTGTGGGAATGATTTGCTGTGATGGAGAGGGGCATTTGAATGACAAGTCCGTTCTAT 894
Query 937 TGCAGAGCAGTGCCGAGCGTACTTCAGGACAGCGTGTTCCAGTGGACTTAAAGAGACTAG 996
||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 895 TGCAGAGCAGTGCTGAGCGTACTTCAGGACAGCGTGTTCCACTGGATTTAAACAGACTAG 954
Query 997 ATCAGTTCTCCATTTTTCCTGGCCAGGTAGTTGGCATTGAGGGGCAAAATCCTAGTGGAC 1056
| |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 955 ACCAGTTCTCCATTTTTCCTGGCCAGATAGTTGGCATTGAGGGACAGAATCCTAGTGGAC 1014
Query 1057 ATTATCTCACTGCATCTAAGCTGCTAGATTCAGTTCCTTTAACACTTACTGTTGACGTGG 1116
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1015 ATTATCTCACTGCATCTAAGCTGCTAGATTCAGTTCCTTTAATACGTGCTGTTGACGTGG 1074
Query 1117 ATCTACCTCCTGCTAAGAGGCAAATCTTGGATCAGGAAGTCTTAGTTCCTGCAGAAGAAT 1176
|||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 1075 ATCTACCTCCTGCTAAGAGGCAAAACTTGGATCAGGAGGTCTTAGTTCCTACAGAAGAAT 1134
Query 1177 CCTGTCAAAAATCAGAGGTTTCATTTATAATTGCATCCGGACCATTCACCACATCAGACA 1236
||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1135 CCTGTGAAAGATCAGAGGTTTCATTTATAATTGCGTCCGGACCATTCACCACATCAGACA 1194
Query 1237 ACTTGCTGTTTGAGCCACTGAATGAGCTACTAGCCTATGCAAAAAGAAAGCCACCACAGT 1296
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1195 ACTTGCTGTTTGAGCCACTGAATGAGCTACTATCCTATGCAAAAAGAAAGCCACCACAGT 1254
Query 1297 TACTCGTGCTGCTTGGACCATTTGTGGATTCTGAGCATCCAGAGATTAAGAAAGGCGCTG 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1255 TACTCGTGCTGCTTGGACCATTTGTGGATTCTGAGCATCCAGAGATTAAGAAAGGAGCTG 1314
Query 1357 TTGATGCCACCTTTAATGAGATATTCCAAGTGGAAGTCCTCAGGAAGTTGCAAGATTACG 1416
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1315 TTGATGCCACCTTTAGTGAGATATTCCAAGTGGAAGTCCTCAGGAAGTTGCGAGATTACG 1374
Query 1417 TGGAATTCATGGGTTCAGAAGTAAGAGTGGTTCTGGTGCCATCCATTCGTGATGCTAACC 1476
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1375 TGGAATTCATGGGTTCAGAAGTAAGAGTGGTTCTGGTGCCATCCATCCGTGATGCTAACC 1434
Query 1477 ATGATTTCATATTCCCACAGCCTCCTTTCGACATTCACATACCTGATCTCGAACATCAGA 1536
|| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1435 ATAATTTCATATCCCCACAGCCTCCTTTCGACATTCATATACCTGATCTCGAACATCAGA 1494
Query 1537 TGACTAGTCTGTCAAACCCGGGGACCTTTGAGGCAAACCAGGTGAAGGTAAGTTGCTGCA 1596
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1495 TGACCAGTCTGTCAAACCCGGGGACCTTTGAGGCAAACCAGGTGAAGGTAGGTTGCTGCA 1554
Query 1597 CGGTGGATGTACTAAAACAGCTGAGTGGGGAGGAGATGTCAAAAAATCCAAGTGGAGTCC 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CGGTGGATGTACTAAAACAGCTGAGTGGGGAGGAGATGTCAAAAAATCCAAGTGGAGTCC 1614
Query 1657 CCACTGATCGCATGTCCAGACTCGCTAGCCATCTCCTCCGTCAGCGAAGCTTCTATCCGC 1716
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1615 CCACTGATCGCATGTCCAGACTTGCTAGCCATCTCCTCCGTCAGCGAAGCTTCTATCCTC 1674
Query 1717 TGTATCCACCGCCCGAGAGCCTCCCTTATGATTCCTCACTCGCTCCTAAGGCGCTACAGA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TGTATCCACCGCCCGAGAGCCTCCCTTATGATTCCTCACTCGCTCCTAAGGCGCTACAGA 1734
Query 1777 TTTCATCAATCCCGGATATTCTTCTACTTCCATCAGACATGAGGTACTTCGTGAAGATTT 1836
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1735 TTTTATCAATCCCGGATATTCTTCTACTTCCATCAGACATGAGGTACTTTGTGAAGATTT 1794
Query 1837 TATCCCTTGGCGAAGAGGAGGATGCAGCCAAGTGCGTTTGTGTAAACCCGGGAAGACTTG 1896
||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 1795 TATCCCTTGGCGAAGAGGAAAATGCAGCCAAGTGTGTATGTGTAAACCCGGGAAGACTTG 1854
Query 1897 CGAAAGGAGAAGGTGCAGGTACTTTCGTTGAGCTTACCTACAAAGGCGGTCCAGAATCGA 1956
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1855 CGAAAGGAGAAGGTGCAGGTACTTTTGTTGAGCTTACCTACAAAGGCGGTCCAGAATCGA 1914
Query 1957 TGCACGCTTCCATCATCTCTATTTAAAAACAGAACCTGCAACGTTT-GCCCAACTCTGCT 2015
|||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 1915 TGCACGCTTCCATCATCTCTATTTAAAAACAGAACCCGCAACGTTTAGCC-AACTCTGCT 1973
Query 2016 AATTCCATATATAATAGAAGCCTTTGGTTCCTCTCACTTTTCATGCTACGGTTAGATGCA 2075
|||| ||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 1974 AATTTCATATATAAGAGAAACCTTTTATTCCTCTCACTTTTCATGCTACGGTTATATGCA 2033
Query 2076 AATGTAATATTCAGATGTATAGTATATCT 2104
|||||||| | ||||||||||||| ||||
Sbjct 2034 AATGTAATCTGCAGATGTATAGTAAATCT 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5