BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67640.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908321 jgi|Araly1|908321|Al_scaffold_0002_1402 2158 0.0
Ahg921747 jgi|Araly1|921747|scaffold_103028.1 1018 0.0
> Ahg908321 jgi|Araly1|908321|Al_scaffold_0002_1402
Length=1329
Score = 2158 bits (1168), Expect = 0.0
Identities = 1276/1329 (96%), Gaps = 3/1329 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAGTCAATCGTCTCCAACCAA-G--GACGCGTCCACAAAGCAGAAGAATGTA 57
|||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAAGTCAGTTGTCTCCAACCAAGGACGACGCGTCCACAAAGCAGAAGAATGTA 60
Query 58 GACGATTGGTTACCGATAACATCCTCTAGAAATGCCAAGTGGTGGTACTCTGCGTTTCAC 117
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GATGACTGGTTGCCGATAACGTCCTCTAGAAATGCCAAATGGTGGTACTCTGCGTTTCAC 120
Query 118 AATGTCACCGCCATGGTCGGGGCTGGTGTACTCAGCTTACCTTACGCCATGTCTAATCTT 177
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct 121 AATGTCACCGCCATGGTCGGAGCTGGTGTGCTCAGCTTACCCTACGCCATGTCCAACCTT 180
Query 178 GGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAACATTCTACACACTA 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 181 GGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAACATTTTACACAATA 240
Query 238 TGGCAGATGGTGCAAATGCACGAGATGGTTCCAGGGAAGAGGTTCGACAGGTACCACGAA 297
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TGGCAGATGGTGCAAATGCATGAGATGGTTCCAGGGAAGAGGTTCGACAGGTACCATGAA 300
Query 298 TTAGGCCAACACGCGTTTGGGGAGAAGCTCGGACTATGGATCGTGGTGCCACAACAACTA 357
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 TTAGGTCAACACGCGTTTGGGGAGAAGCTTGGACTCTGGATCGTGGTGCCACAACAACTA 360
Query 358 ATCGTTGAAGTAGGTGTGGATATTGTGTACATGGTTACGGGAGGGAAGTCATTGaaaaaa 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATCGTTGAAGTAGGTGTGGATATTGTATACATGGTTACGGGAGGGAAGTCATTGAAAAAA 420
Query 418 aTTCATGACCTTCTTTGCACCGATTGCAAAAATATAAGAACTACATATTGGATCATGATC 477
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ATCCATGACCTTCTTTGCACCGATTGCAAAAATATAAGAACTTCATATTGGATCATGATC 480
Query 478 TTCGCTTCCATACACTTTGTTCTTGCTCATCTCCCTAATTTTAACTCCATATCTATCGTC 537
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 481 TTCGCTTCCATACACTTTGTTCTTGCTCATCTCCCTAACTTTAACTCTATGTCTATCGTC 540
Query 538 TCCCTTGCTGCTGCCGTTATGTCTTTGAGCTACTCGACAATCGCTTGGGCAACCTCGGTG 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 TCCCTTGCTGCTGCCGTTATGTCTTTGAGCTATTCGACAATCGCTTGGGCAACCTCGGTG 600
Query 598 AAGAAAGGAGTTCATCCAAATGTAGACTACTCGTCTAGAGCATCTACAACCTCAGGAAAT 657
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 AAGAAAGGAGTTCATCCAAATGTAGACTACTCGTCTAGAGCATCTACGACCTCAGGAAAT 660
Query 658 GTATTCAACTTCTTGAATGCACTAGGAGATGTGGCATTTGCGTATGCAGGTCACAACGTT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTATTCAACTTCTTGAATGCACTAGGAGATGTGGCATTTGCGTATGCAGGTCACAACGTC 720
Query 718 GTGTTGGAGATACAAGCTACTATTCCTTCAACACCTGAGAAACCATCAAAGATTGCAATG 777
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GTGTTGGAGATTCAAGCTACTATTCCTTCAACTCCTGAGAAACCATCAAAGATTGCAATG 780
Query 778 TGGAAAGGAGTAGTAGTTGCATACATCGTTGTTGCCATATGCTACTTTCCCGTTGCATTT 837
||||||||||| |||||||| || |||| || |||||||||||||| |||||||||||
Sbjct 781 TGGAAAGGAGTTGTAGTTGCCTATGTCGTGGTCGCCATATGCTACTTCCCCGTTGCATTC 840
Query 838 GTTTGCTACTATATCTTTGGAAACAGTGTGGACGACAATATTCTCATGACGTTGGAGAAA 897
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 GTTTGCTACTATATTTTTGGAAACAGTGTGGACGACAATATTCTCATGACGTTGCAGAAA 900
Query 898 CCCATCTGGCTTATCGCCATTGCTAACGCATTCGTGGTTGTCCATGTCATTGGAAGCTAC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCCATCTGGCTTATCGCCATTGCTAACGCATTCGTGGTTGTCCATGTCATTGGAAGCTAT 960
Query 958 CAAATATACGCAATGCCGGTCTTTGACATGCTCGAAACCTTTTTGGTAAAGAAGATGATG 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 CAAATATACGCAATGCCGGTCTTTGACATGCTTGAAACCTTTTTGGTAAAGAAGATGATG 1020
Query 1018 TTCGCTCCTTCCTTCAAACTCCGCTTCATCACTCGTACTCTATATGTTGCTTTCACGATG 1077
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCGCTCCGTCCTTCAAACTCCGCTTCATCACTCGTACTCTATATGTTGCTTTCACGATG 1080
Query 1078 TTCGTTGCCATATGCATCCCATTTTTTGGTGGATTGCTCGGGTTTTTCGGAGGATTCGCC 1137
|| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1081 TTTGTTGCTATATGCATCCCATTTTTTGGTGGATTACTCGGTTTTTTTGGAGGATTCGCC 1140
Query 1138 TTTGCCCCAACAACTTACTATCTACCATGCATCATGTGGCTTTGTATCAAGAAACCAAAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTGCCCCAACAACTTACTATCTACCATGCATCATGTGGCTTTGTATCAAGAAACCAAAG 1200
Query 1198 AAGTATGGATTGTCTTGGTGTATTAATTGGTTTTGCATAGTAGTTGGTGTTATATTGACG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAGTATGGATTGTCTTGGTGTATTAATTGGTTTTGCATAGTAGTTGGTGTTATATTGACG 1260
Query 1258 ATCCTAGCTCCCATTGGTGGCCTCAGAACCATTATTATCTCAGCCAAAAACTACGAATTC 1317
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1261 ATCGTAGCTCCCATTGGTGGCCTCAGAACCATTATTATCTCAGCCAAAAACTACAAATTC 1320
Query 1318 TTCTCTTGA 1326
|||||||||
Sbjct 1321 TTCTCTTGA 1329
> Ahg921747 jgi|Araly1|921747|scaffold_103028.1
Length=1369
Score = 1018 bits (551), Expect = 0.0
Identities = 1060/1303 (81%), Gaps = 46/1303 (4%)
Strand=Plus/Plus
Query 45 GCAGAAGAATGTAGACGATTGGTTACCGATAACATCCTCTAGAAATGCCAAGTGGTGGTA 104
||||||||| || ||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 68 GCAGAAGAACGTCGACGATTGGTTACCGATCACATCCTCCAGAAACGCTAAGTGGTGGTA 127
Query 105 CTCTGCGTTTCACAATGTCACCGCCATGGTCGGGGCTGGTGTACTCAGCTTACCTTACGC 164
|||||| ||||||||||||||||||||||| || |||||||| |||||||| || |||||
Sbjct 128 CTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTCAGCTTGCCCTACGC 187
Query 165 CATGTCTAATCTTGGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAAC 224
||||| ||||| |||||||||||||| ||||| || ||| | ||||||||| | |||||
Sbjct 188 TATGTCCAATCTCGGATGGGGACCTGGTGTGACGATTATGGTGATGTCATGGTTAATAAC 247
Query 225 AT-TCTACACACTATGGCAGATGGTGCAAATGCACGAGATGGTTCCAGGGAAGAGG-TTC 282
| | |||||||| ||||| |||||| | ||||| ||||| ||||||||||||||| ||
Sbjct 248 -TATGTACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTT- 305
Query 283 GACAGGTACCACGAATTAGGCCAACACGCGTTTGGGGAGAAGCTCGGACTATGGATCGTG 342
|| ||||| ||||| |||| |||||||| ||||| || ||||| || |||||||||||
Sbjct 306 GATAGGTATCACGAGCTAGGTCAACACGCTTTTGGCGAAAAGCTTGGCCTATGGATCGTC 365
Query 343 GTGCCACAACAACTAATCGTTGAAGTAGGTGTGGATATTGTGTACATGGTTACGGGAGG- 401
||||| || || || ||||| || || ||||| || || || || ||||| || |||||
Sbjct 366 GTGCCGCAGCAGCTTATCGTGGAGGTCGGTGTAGACATCGTTTATATGGTCACAGGAGGA 425
Query 402 GAAGT-CATTGaaaaaaaTTCATGACCTTCTTTGCACCGATTGCAAA-AATATAAGAACT 459
| | | | || || ||| | ||| | || || || | ||||||||| || || ||||||
Sbjct 426 GCA-TCCCTT-AAGAAAGTCCATCAACTACTCTGTTCTGATTGCAAAGAA-ATCAGAACT 482
Query 460 ACATATTGGATCATGATCTTCGCTTCCATACACTTTGTTCT-TGCTCATC-TCCCTAATT 517
|||| ||||||||||||||| |||||||| || |||||| | | |||| | |||| ||||
Sbjct 483 ACATTTTGGATCATGATCTTTGCTTCCATCCATTTTGTTATCT-CTCACCTTCCC-AATT 540
Query 518 TTAACTCCATATCTATCGTCTCCCTTGCTGCTGCCGTTATGTCTTTGAGC-TACTCGACA 576
| ||||| || || ||| |||| || || || || |||||||| || | | ||||| ||
Sbjct 541 TCAACTCTATCTCCATCATCTCACTCGCCGCGGCTGTTATGTCCTT-AACTTACTCAACT 599
Query 577 ATCGCTTGGGCAACCTCGGTGAAGAAAGGAGTTCATCCAAATGTAGACTACTCGT-CTAG 635
||||||||| | | |||||| | ||||| || |||||| |||| |||||| | | ||||
Sbjct 600 ATCGCTTGGACTGCTTCGGTGCACAAAGGGGTACATCCAGATGTGGACTACAC-TCCTAG 658
Query 636 AGCATCTA-C-AACCTCAGGAAATGTATTCAACTTCTTGAATGCACTAGGAGATGTGGCA 693
||| |||| | | || ||||| |||||||||||||||||||| | |||||||||||
Sbjct 659 AGCCTCTACCGATGCT--GGAAAAGTATTCAACTTCTTGAATGCGTTGGGAGATGTGGCT 716
Query 694 TTTGCGTATGCAGGTCACAACGTTGTGTTGGAGATACAAGCTACTATTCCTTCAACACCT 753
||||| ||||||||||||||||||||||||||||| || || || || ||||| || ||
Sbjct 717 TTTGCCTATGCAGGTCACAACGTTGTGTTGGAGATTCAGGCCACAATCCCTTCGACTCCG 776
Query 754 GAGAAACCATCAAAGATTGCAATGTGGAAAGGAGTAGTAGTTGCATACATCGTTGTTGCC 813
|||| ||||| ||||| ||||||||| |||||| || || || ||||| || || |||
Sbjct 777 GAGATGCCATCCAAGATCCCAATGTGGAGAGGAGTTGTTGTAGCCTACATTGTAGTCGCC 836
Query 814 ATATGCTACTTTCCC-GTTGCATTTGTTTGCTACTATATCTTTGGAAACAGTGTGGACGA 872
|| |||||||| ||| || ||||| | |||| ||||||||||||||||| || || ||
Sbjct 837 ATCTGCTACTT-CCCTGTAGCATTCCTCGGCTATTATATCTTTGGAAACAGCGTTGATGA 895
Query 873 CAATATTCTCATGACGTTGGAGAAACCCATCTGGCTTATCGCCATTGCTAACGCATTCGT 932
||| |||||||| || |||||||| || |||||||||| ||||| |||||| |||||
Sbjct 896 CAACATTCTCATCACTTTGGAGAAGCCTGTCTGGCTTATTGCCATGGCTAACATGTTCGT 955
Query 933 GGTTGTCCATGTCATTGGAAGCTACCAAATATACGCAATGCCGGTCTTTGACATGCTCGA 992
||||||||| |||||||||||||| || |||| ||||||||||| ||||||||| | ||
Sbjct 956 GGTTGTCCACGTCATTGGAAGCTATCAGATATTTGCAATGCCGGTATTTGACATGATGGA 1015
Query 993 AACCTTTTTGGT-AAAGAAGATGA-TGTTCGCTCCTTCCTTCAAACTCCGCTTCATCACT 1050
|||| ||||||| ||| ||||||| | |||| |||||||||||| |||||||| ||||||
Sbjct 1016 AACCGTTTTGGTCAAA-AAGATGAAT-TTCGATCCTTCCTTCAAGCTCCGCTTTATCACT 1073
Query 1051 CGTA-CTCTATATGTTGCTTTCACGATGTTCGTTGCCATATGCATCCCATTTTTTGGTGG 1109
|||| | || || || |||||||||||| ||||||| |||||| |||| ||||| |||||
Sbjct 1074 CGTAGC-CTTTACGTCGCTTTCACGATGATCGTTGCGATATGCGTCCCGTTTTTCGGTGG 1132
Query 1110 ATTGCTCGGGTT-TTTCGGAGGATTCGCCTTTGCCCCAACAACTTACTATCTACCATGCA 1168
| | || || || ||| |||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1133 ACTACTTGGCTTCTTT-GGAGGATTCGCCTTCGCCCCAACAACTTACTACCTTCCATGCA 1191
Query 1169 TCATGTGGCTTTGTA-TCAAGAAACCAAAGAAGTATGGAT-TGTCTTGGTGTATTAATTG 1226
| || ||||| || ||||||||||||||| || ||| | | |||||| ||||| ||
Sbjct 1192 TTATTTGGCTC-GTTCTCAAGAAACCAAAGAGGTTTGG-TCTATCTTGGACAATTAACTG 1249
Query 1227 GTTTTGCAT-AGTAGTTGGTGTTATATTGACGATCCTAGCTCCCA-TTGGTGGCCTCAGA 1284
||| ||||| | |||| || ||| | |||||||||||||| |||| |||| || ||||||
Sbjct 1250 GTTCTGCATCA-TAGTAGGAGTTCTTTTGACGATCCTAGC-CCCAATTGGAGGTCTCAGA 1307
Query 1285 ACCATTATTATCT-CAGCCAAAAAC-TACGAA-TTCTTCTCTT 1324
||||| |||||| | ||||| | | ||| || ||||||||||
Sbjct 1308 ACCATCATTATCAAC-GCCAAGA-CGTAC-AAGTTCTTCTCTT 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5