BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67645.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475866 jgi|Araly1|475866|fgenesh2_kg.2__996__AT1G67645.1 939 0.0
> Ahg475866 jgi|Araly1|475866|fgenesh2_kg.2__996__AT1G67645.1
Length=849
Score = 939 bits (508), Expect = 0.0
Identities = 736/842 (87%), Gaps = 31/842 (4%)
Strand=Plus/Plus
Query 368 CGAGAAAACGATCCCCTCTTCCGTCTCTAGAGTCGATT-GCGTCAGATACTAGTAAGGTC 426
||||||| |||| ||||||||||||||||||||||||| | |||| | ||||||||| ||
Sbjct 33 CGAGAAATCGAT-CCCTCTTCCGTCTCTAGAGTCGATTAG-GTCAAAGACTAGTAAGATC 90
Query 427 AGGCGTGTGGGAGATAGAGTATTTGAAAGGGAAT-ATAATGGCCCGGAATATAGTGCCCG 485
| |||||||||||||||| ||||||||||| || ||| ||| | | || |
Sbjct 91 AAGCGTGTGGGAGATAGAAAATTTGAAAGGG-ATGATAGTGG--C----TGTA-T----- 137
Query 486 TGTTGCCACTGATCTGACTTGTGATACTGTGAGGGGCCTTTTGTGGGTAGACGAGAGTGG 545
| || | | ||| |||| || |||| ||||||||||||||||||||||||| |||||||
Sbjct 138 T-TT-CGA-TGAGCTGAGTTCTGATGTTGTGAGGGGCCTTTTGTGGGTAGACAAGAGTGG 194
Query 546 AACAGATTACGTTGTGGTGTGGTTCTTCGACCTCCCTGGCCACTCTTATATAAGCTTTTG 605
| |||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 195 ATCAGAGTACGTTGTGGTGTGGTTCTTTGACCTTCCTGGCCACGCTTATATAAGCTTTTG 254
Query 606 CAAGAAAGGGGACACTCATTACACTGACATTCCTCTGTTTTTCCGAGACGCCCACTTTTT 665
|||||||||||| ||||| ||||||||||||||||||| || || ||||| ||||| ||
Sbjct 255 CAAGAAAGGGGATACTCAATACACTGACATTCCTCTGTATTACCCAGACGACCACTGGTT 314
Query 666 GGATGGCTTATCTTATATGGTACTGGGGCGTTACTC-TCTTTATATCTCGACAAGTCGTC 724
| | |||||||||||||||||||| |||||| || | |||||||||||||||||||||||
Sbjct 315 GAACGGCTTATCTTATATGGTACTAGGGCGTGAC-CGTCTTTATATCTCGACAAGTCGTC 373
Query 725 GTTTTGTTAAAGTCCTAGATCTGTCTGGACCGCAAGGTTTCTTCAAGGACATCACCGAGG 784
||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 374 GTTATATTCAAGTCCTAGATCTCTCTGGACCGCAAGGTTTCTTCAAGGACATCACCGAGG 433
Query 785 GTAATAAACCATTCTCAATGCTTTCTCGTTATCACTCGTGGGATTCTAGCATTGCTGTTA 844
| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 434 G---CAAACCATTCCCAATGCTTTCTCGTTATCAATCATGGGATTCTAGCATTGCGGTTA 490
Query 845 CAACCTCTGGAGAGGTTTTGTTGGTTGAGAGTAATCCATGGCAGAGGGACTGCTTCCGCG 904
||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||||||||
Sbjct 491 CAACCTCAGGAGAGGTTTTGTTGGTGGAGAGTGATCCATGCCAGAGGAACTGCTTCCGCG 550
Query 905 TCTACAAGTATG-ATCCTAATGTAGAACTCCCAGATTAC-GCCTGCCACACTGTTCTTGA 962
|||||||| | | ||| ||||||| || |||||||| | ||| || |||| |||| |||
Sbjct 551 TCTACAAG-AAGAATCTTAATGTAAAAGACCCAGATT-CTGCCAGCAACACGGTTCGTGA 608
Query 963 GGT-TGATTCTCTTGGTGGTGAGGCCCTGCTTCTTGACTTGGGTTTCACTATACCTGCTA 1021
|| | ||||||||| ||||||||| |||||||||||||||||||| ||| | |||||||
Sbjct 609 AGTAT-ATTCTCTTGATGGTGAGGCTCTGCTTCTTGACTTGGGTTTTACTGTGCCTGCTA 667
Query 1022 ACGAAACCCTTGGTATCGAACCAGACTCCATCTATTTCACCCGTCACTACCGTCCCTGCC 1081
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ACGATACCCTTGGTATCGAACCAGACTCCATCTATTTCACCCGTCACTACCGTCCCTGCC 727
Query 1082 AATGCAGACCTCGTGACCTTGACATCTGTGTGTTCAATCTTGTAACAAAGACCCTCAAAC 1141
||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 728 AATGCTCACCTTGTGACCTTGACATCTGTGTGTTCAATCTTGTAACCAAGTCCCTCAAAC 787
Query 1142 GCTTTCCTGCTCTTGACGACATGTCTCTTATGGATGCTCGATGGTTTCTCCATGCCAATT 1201
||||||||| ||||||||||||| ||| |||||||||||||||||||||| || ||||
Sbjct 788 GCTTTCCTGGTCTTGACGACATGAATCTCATGGATGCTCGATGGTTTCTCCCTGGGAATT 847
Query 1202 AA 1203
||
Sbjct 848 AA 849
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 124 GGAGCTCGTCGGATCTTCAAGGTTTTAA 151
||||||||||||||||||||||||||||
Sbjct 1 GGAGCTCGTCGGATCTTCAAGGTTTTAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5