BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67660.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926030 jgi|Araly1|926030|scaffold_201591.1 1764 0.0
> Ahg926030 jgi|Araly1|926030|scaffold_201591.1
Length=1112
Score = 1764 bits (955), Expect = 0.0
Identities = 1063/1115 (95%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 33 TCGAATGTGATTTTTGGTTGATGATGATGAGGCTAGTTCAAGTATCTTCCACTGAATCCA 92
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1 TCGAATGTGATTTGTGGTTGATGATGATGAGGCTAGTTCAAGTATCGTCTACTGAATCCA 60
Query 93 TTTCTTCTATTTCCGCTTCCTCGGCCCGGAATGGTGGAGTTCTCTACTTGAAGCGTGGTT 152
||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 61 TTTCTTCTATTTCAGCTTCCTCGGCCCGGAATGGAGGAGTTCTCTACCCGAAGTGTGGTT 120
Query 153 CTGTCTGT-G--TATGTAGAGTCTTGAAGCCGAATAAAGTTGCTCT-CAACAGTATGATT 208
|||||||| | |||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 121 CTGTCTGTGGTTTATGTAGAGTCTTGAAGCCGAATAAAGTTGCT-TACAACAGCATGATT 179
Query 209 CTTTCAGCTATGAGGACTTGCTCAATCTCTGGGTTCCATACTCATCTTCCGAAGTCAAGC 268
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 180 CTTTCAGCTATGAGGACTTGCTCAATTTCTGGGTTCCATACTCATCTTCCCAAGTCAAGC 239
Query 269 GGTTCAGTTTCTTCGAGAAAGAGGTTTTCTTCTACTGCTTTATCACTCATCACTCAAACC 328
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 240 GGTTCAGTTTCTTCGAGAAAGAGGTTTTCTTCTACTGCCTTATCAGTCATCACTCAAACC 299
Query 329 ATTTCACCATTTGCTCATCCCCGTTCATCAGTAATTGTGTCAAGCCTTCTCTCCCCATCT 388
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 GCTTCACCATTTGCTCATCCCCGTTCGTCAGTAATTGTGTCAAGCCTTCTCTCCCCATCT 359
Query 389 GATATCCCTCAGAAATCTGAAGAATGGTTTGCTTTAAGGAAAGACAAGTTAACCACAAGT 448
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GATATCCCTCAGAAATCAGAAGAATGGTTTGCTTTACGGAAAGACAAGTTAACCACAAGT 419
Query 449 ACATTCAGTACAGCGCTGGGGTTTTGGAAAGGAAACCGGCGTGCCGAGCTCTGGCATGAA 508
||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ACATTCAGTACAGCGCTTGGTTTTTGGAAAGGAACCCGGCGTGCCGAGCTCTGGCATGAA 479
Query 509 AAGGTTTATGATTCAGATGCACGAGTTGTTGAGGAGTCTGCACGGTTTGCTATGAACTGG 568
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 AAGGTTTATGATTCAGATTCACGAGTCGTTGAGGAGTCTGCACGGTTTGCTATGAACTGG 539
Query 569 GGTGTACAAATGGAATCATCTGCGATAGAAAGGTACAAAAGAATAATGGGTTGTGAGGTT 628
|||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 540 GGTGTACAGATGGAATCAGCTGCGATAGAAAGGTACAAACGAATAATGGGTTGTGAGGTC 599
Query 629 GGAACAATGGGATTTGCTATTCACTCCAATGAGGAATTTCACTGGCTTGGCGCTTCACCG 688
|| |||||||||||||||||||||||||| ||| | |||||||||||||| ||||| |||
Sbjct 600 GGGACAATGGGATTTGCTATTCACTCCAACGAGCAGTTTCACTGGCTTGGTGCTTCCCCG 659
Query 689 GATGGAATCCTCGATTGCTTTGGTATTCTAGAAGTGAAATGTCCATATAACAAAGGGAAA 748
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATGGAATTCTTGATTGCTTTGGTATTCTAGAAGTGAAATGTCCATATAACAAAGGGAAA 719
Query 749 ACCGAAACTGTATTACCCTGGAAAAAAGTGCCCTACTATTACATGCCTCAGCTGCAGGGT 808
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACCGAAACTGTATTACCGTGGAAAAAAGTGCCCTACTATTACATGCCTCAGCTGCAGGGT 779
Query 809 CAAATGGAGATAATGGACCGGGAATGGGTCAACTTATACTGCTGGACACGAAATGGAAGC 868
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 780 CAAATGGAGATAATGGACCGGGAATGGGTCAACTTATATTGCTGGACACGAAACGGAAGC 839
Query 869 ACGGT-TTTCCGTGTGATGAGAGACCGAAGCTATTGGAGAATCATACATGATGTATTAAG 927
||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 ACGGTCTTTC-GTGTGATGAGAGACCGAAGCTATTGGAGAATCATTCATGATGTATTAAG 898
Query 928 GGAGTTCTGGTGGGAGAGTGTGATTCCTGCAAGGGAGGCTTTGTTGTTAGGGAAAGAGGA 987
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGAGTTCTGGTGGGAGAGTGTGATTCCTGCAAGGGAGGCTTTGTTGTTAGGGAAAGAGGG 958
Query 988 TGAGGAGGTGAAAAAGTATGAGCCAACATCTACGCATAAACGAACCAAGCTTGCCATAGC 1047
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 959 TGAGGAGGTGAAAAAGTATGAGCCAACATCTACACATAAGCGAACCAAGCTTGCCATAGC 1018
Query 1048 TAAAAGCCTAAATTTGGCTGCGGAATCAAAACTAGTATGCAGAGAAATTGCTGATCATGT 1107
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 TAAAAGCATAAATTTGGCTGCGGAATCAAAACTAGTATGCAGAGAAATCGCTGATCATGT 1078
Query 1108 CGAGTTCTTTTAGATGAAATAGGAGAATGATGATT 1142
|||||||||||||||||| ||||||||||||||||
Sbjct 1079 CGAGTTCTTTTAGATGAA-TAGGAGAATGATGATT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5