BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67670.1 Length=195 Score E Sequences producing significant alignments: (Bits) Value Ahg926031 jgi|Araly1|926031|scaffold_201592.1 339 6e-93 > Ahg926031 jgi|Araly1|926031|scaffold_201592.1 Length=236 Score = 339 bits (183), Expect = 6e-93 Identities = 191/195 (98%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1 ATGGATTCAGGGCCGTCGTGGGCTGATCAATGGGATTACAATAACCCTGACCCTCTACCG 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 22 ATGGATTCGGGGCCGTCGTGGGCTGATCAATGGGATTACAATAACCCTGACCCTCTTCCG 81 Query 61 AGTTCGACgaaagaggatgagagcaaaaagaagaacaagaagaagaaggaagaagatgga 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 AGTTCGGCGAAAGAGGATGAGAGCAAAAAGAAGAACAAGAAGAAGAAGGAAGAAGATGGA 141 Query 121 agcaaaagCAGTCTTGGGAAGACATTACTTGGGTTCAAATGGATGAAGGAGCTCCGCAAG 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 142 AGCAAAAGCAGTCTTGGGAAGACATTACTTGGGTTCAAATGGATGAAAGAGCTCCGCAAG 201 Query 181 AAATCTGAAAAGTGA 195 ||||||||||||||| Sbjct 202 AAATCTGAAAAGTGA 216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6568380892 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5