BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G67670.1

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926031 jgi|Araly1|926031|scaffold_201592.1                        339    6e-93


> Ahg926031 jgi|Araly1|926031|scaffold_201592.1
Length=236

 Score =  339 bits (183),  Expect = 6e-93
 Identities = 191/195 (98%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTCAGGGCCGTCGTGGGCTGATCAATGGGATTACAATAACCCTGACCCTCTACCG  60
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  22   ATGGATTCGGGGCCGTCGTGGGCTGATCAATGGGATTACAATAACCCTGACCCTCTTCCG  81

Query  61   AGTTCGACgaaagaggatgagagcaaaaagaagaacaagaagaagaaggaagaagatgga  120
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   AGTTCGGCGAAAGAGGATGAGAGCAAAAAGAAGAACAAGAAGAAGAAGGAAGAAGATGGA  141

Query  121  agcaaaagCAGTCTTGGGAAGACATTACTTGGGTTCAAATGGATGAAGGAGCTCCGCAAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  142  AGCAAAAGCAGTCTTGGGAAGACATTACTTGGGTTCAAATGGATGAAAGAGCTCCGCAAG  201

Query  181  AAATCTGAAAAGTGA  195
            |||||||||||||||
Sbjct  202  AAATCTGAAAAGTGA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6568380892


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5