BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67680.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475871 jgi|Araly1|475871|fgenesh2_kg.2__1001__AT1G67680.1 3068 0.0
Ahg908324 jgi|Araly1|908324|Al_scaffold_0002_1405 1448 0.0
> Ahg475871 jgi|Araly1|475871|fgenesh2_kg.2__1001__AT1G67680.1
Length=2162
Score = 3068 bits (1661), Expect = 0.0
Identities = 2036/2210 (92%), Gaps = 54/2210 (2%)
Strand=Plus/Plus
Query 20 GACAAAACTCTCGAAGCTTGGATCCCGATTTCTCCAAGCAGCCATGGCTCCGAAATCGAA 79
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 1 GACAAAACTCTCGAAGCTTGGATCCCG-TTT-T----GCAGCCATGGCTCCGAAATCGAA 54
Query 80 AGAAAAATCCAAAACATCGAA-TTCACAACCACCTCCAGCAATCGAAGATCTCTTCACTT 138
|||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| ||
Sbjct 55 AGAAAAATCCAAAACATC-AACTTCACAACCTCCTCTAGCAATCGAAGATCTCTTCAGTT 113
Query 139 CCCTCCACCAACATAT-CAAGGATACTAAATATGAAGAAGCCGTCAAGGTCGCTGATCAA 197
||||| | ||||| || |||| || ||| ||||||||||||||||||||| ||| ||
Sbjct 114 CCCTCAATGGTCATATCCAGGGAT-CTGAATTTGAAGAAGCCGTCAAGGTCGCAGATAAA 172
Query 198 GTTTTGTCGATTGTACCTACCGATGAGGATGCGATCCGATGCAAAGTTGTGGCTCTGATA 257
|||||||||||| |||||| | | ||| || ||||| | | | | |||
Sbjct 173 GTTTTGTCGATTTTACCTA-C--T---GAT--GA--GGATGC---G--AT--C-C-GAT- 212
Query 258 AAAGACGATAAGTTCGATGATTATCTAATCAAAGACGTTAAGATCAATGGTGCTCTCTCC 317
| | | ||||| | || ||| || ||||||| ||||||| ||||||||||||||
Sbjct 213 ---G-C-A-AAGTT-G-TG--GCTCTGATAAAAGACGATAAGATCGATGGTGCTCTCTCC 262
Query 318 GTCATTAACTCGTTCCAGAAGCTTCCAATCGATCTAGGTTTTCACAAGGCGTATTGCTTA 377
||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 263 GTCATTAGCTCGTTCCAGAAGCTTCCAATCGATCTAGGGTTTCAAAATGCGTATTGTTTA 322
Query 378 TACCGTGTAAACAAGCTAGATGAGGCTTTGGTGTGTTTAAAAGGTCTCGAGAGAGATACA 437
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 323 TACCGTCTAAACAAGTTAGATGAGGCGTTGGTGTGTTTAAAAGGTCTCGAGAGAGATTCA 382
Query 438 GATACTTTGGTTTTGGAGGCTCAGATTTTGTACCGTTTGGGGAAGGCAGATGCGTGTGTG 497
||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 383 GATACTTTGCTTTTGGAGTCTCAGATTTTGTACCGTTTGGGGAAAGCAGATGCTTGTGTG 442
Query 498 GATGTGTATCAGAAACTGACCAAGTCCCAGATTGAGACGTTAGAGGTTAATTTAGTCGCC 557
||||||| ||||||||||| |||||| |||||||| |||||||| | |||||||||| |
Sbjct 443 GATGTGTGTCAGAAACTGAGCAAGTCGGAGATTGAGTCGTTAGAGATCAATTTAGTCG-C 501
Query 558 GG-GTTGATTTCAGCTGGAAAAGCTTCTCAAGTG-CAGAAAACATTGGAGAGTTTGAAGA 615
|| ||||||| ||||||||||||||||||| ||| || ||| |||||||| |||||||||
Sbjct 502 GGCGTTGATTACAGCTGGAAAAGCTTCTCAGGTGCCA-AAAGCATTGGAGGGTTTGAAGA 560
Query 616 TCAAACCAACTAGTAGTTTTGAGTTGGCTTATAATACTGCTTGCTCTTTGATTGAAAACA 675
||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 561 TCAAACCAACTAGTACTTATGACTTGGCTTATAATACTGCTTGCTCTTTGATTGAAAACA 620
Query 676 ATAACTATGCTGATGCTGAACAACTTTTGCTCACTGCCAGGAGAATTGGTCAGGAAACCC 735
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 621 ATAACTATGCCGATGCTGAACAACTTTTGCTCACTGCCAAGAGAATTGGTCAGGAAACCC 680
Query 736 TCAATGATGACGACATCGCTTTAACCGATGAAG-AAATTGAGATTGAGCTGGCCCCAATT 794
||| ||| || ||| | | || | |||| || | || |||| ||||||||||||||||
Sbjct 681 TCACTGAAGATGAC-T-G--TT--CTGATG-AGTATATCGAGACTGAGCTGGCCCCAATT 733
Query 795 GCTGTTCAATTAGCATATGTCCAACAGATCCTTGGACAAACTCAAGAATCCACCAGCTCT 854
||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 734 TCTGTTCAATTAGCATATGTTCAACAGGTCCTTGGGCAAACTCAAGAATCCACCAGCTCT 793
Query 855 TATGTAGATTTCATTAAACGAAATCTGGCTGATGAACCTTCACTTGCTGTTGCTGTAAAC 914
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 794 TATGTAGATATCATTAAACGAAATCTGGCTGATGAACCTTCACTTGCTGTTGCTGTGAAC 853
Query 915 AACCTTGTTGCCTTGAAAGGTTTCAAAGATATTTCTGATGGCTTGAGGAAGTTTGATCTG 974
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 854 AACCTTGTTGCCTCGAAAGGTTCCAAAGATATTTCTGATGGCTTGAGGAAGTTTGATCGG 913
Query 975 CTGAAAGACAAAGACTCCCAAACTTTTCAGCTTTCTCAAGCACTTGATGCAAAGCTTTCA 1034
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 914 CTGAAAGAAAAAGACTCCCAAAATTTTCAGCTTTCTCAAGAACTTGATGCAAAGCTTTCA 973
Query 1035 CAGAAACATAAGGAGGCTATATATGCCAATCGCGTCCTTCTACTCCTCCATGCAAATAAG 1094
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CAGAAAAATAAGGAGGCTATATATGCCAATCGCGTCCTTCTACTCCTCCATGCAAATAAA 1033
Query 1095 ATGGATCAGGCACGAGAACTTTGTGCTGCACTGCCCGGTATGTTTCCTGAGAGTATTATT 1154
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 1034 ATGGATCAGGCACGAGAACTTTCTGCTGCACTGCCGGGTATGTTTCCTGAGAGTGTTATT 1093
Query 1155 CCTACATTGCTTCAAGCTGCCGTTTTGGTGAGAGAAAACAAGGCTGCCAAAGCTGAAGAA 1214
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1094 CCTACATTGCTTCAAGCTGCTGTTTTGGTGAGAGAAAACAAGGCTGCCAAAGCTGAAGAA 1153
Query 1215 CTTTTGGGACAGTGTGCCGAAAAATTCCCGGAAAAGTCTAAGTTGGTTCTCTTGGCCAGG 1274
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1154 CTTCTGGGACAGTGTGCCGAAAAATTTCCGGAAAAGTCTAAGTTGGTTCTCTTGGCCAGG 1213
Query 1275 GCACAAATTGCTGCTTCTGCCAGTCATCCTCATGTAGCAGCAGAGTCCCTATCCAAAATA 1334
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1214 GCACAAATTGCTGCGTCTGCCAGTCATCCTCATGTAGCAGCAGAGTCCCTGTCCAAAATA 1273
Query 1335 CCTGATATTCAGCATTTGCCTGCAACTGTTGCCACCATTGTCGCCCTCAAAGAGCGTGCT 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CCTGATATTCAGCATTTGCCTGCAACTGTTGCCACCATTGTCGCCCTCAAAGAGCGTGCT 1333
Query 1395 GGAGACAATGATGGTGCTGCTGCTGTTCTTGACTCAGCAATTAAATGGTGGTCAAATTCG 1454
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1334 GGGGACAATGATGGTGCTGCTGCTGTTCTTGACTCAGCAATTAAATGGTGGTCGAATTCG 1393
Query 1455 ATGACCGAGAGCAGTAAGCTTAGGGTATTGATGCCAGAGGCTGCTGCCTTCAAGCTAAGG 1514
||||| ||||||| ||||||||| ||| ||||||| |||||||||||||||||||| |||
Sbjct 1394 ATGACTGAGAGCAATAAGCTTAGTGTAATGATGCCGGAGGCTGCTGCCTTCAAGCTCAGG 1453
Query 1515 CATGGTCAAGAAGAGGAGGCTTCACGGCTATACGAGGAAATTGTGAAAAACCACAATAGC 1574
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1454 CATGGTCAAGAAGAGGAGGCTTCACGGCTATACGAGGAGATTGTGAAAAACCATAATAGC 1513
Query 1575 ACAGATGCTCTGGTTGGTCTTGTGACTACACTTGCTCGTGTCAATGTTGAGAAAGCAGAA 1634
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1514 ACAGATGCTCTGGTTGGTCTTGTGACTACACTTGCTCGTGTCAATGTCGAGAAAGCAGAA 1573
Query 1635 AGTTATGAGAAACAGCTTAAGCCCCTACCAGGTTTGAAGGCTGTTGATGTGGATAAACTA 1694
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1574 ACTTATGAGAAACAGCTTAAGCCCTTACCAGGTTTGAAGGCTGTTGATGTGGATAACCTA 1633
Query 1695 GAAAAGACCTATGGTGCAAAACCCATTGAAGGCGCTGCTGCTTCATCGAGTCaggaagaa 1754
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1634 GAAAAGACCTCTGGTGCAAAACCCATTGAAGGCTCTGCTGCTTCATCGAGTCAGGAAGAA 1693
Query 1755 gtgaagaaagaaaaggcgaagaggaagaggaagagaaagCCAAAGTATCCCAAAGGATTT 1814
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 GTGAAGAAAGAGAAGGCGAAGAGGAAGAGGAAGAGAAAGCCAAAGTATCCCAAAGGATTC 1753
Query 1815 GATCCGGCAAACCCAGGTCCACCCCCAGACCCTGAAAGGTGGCTTCCCAGAAGGGAAAGG 1874
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1754 GATCCAGCTAACCCAGGTCCACCTCCAGACCCTGAAAGGTGGCTTCCCAGAAGGGAAAGG 1813
Query 1875 TCAAGTTACAAACCCAAGAGGAAGGACAAGCGAGCAGCTCAAATCCGTGGCTCGCAGGGT 1934
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 TCAAGTTACAGACCCAAGAGGAAGGACAAGCGAGCAGCTCAAATCCGTGGCTCGCAGGGT 1873
Query 1935 GCGGTGACCAAGGATAAACAAGAAGCAGCTCCTTCAACTTCAAAGTCAAACCAAGTGGCC 1994
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1874 GCGGTGACGAAGGATAAGCAAGAAGCATCTCCTTCAACTTCAAAGTCAAACCAAGCGGCG 1933
Query 1995 AGTTCTAAAGGGAATGCACCTGCGCCTTCCTCTAAGGCCTCAAAAAAGAAGTCTAGAAGA 2054
|||||||||| |||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 1934 AGTTCTAAAGCCAATGCAGCTGCGCCTTCTTCAAAGGCCTCGAAAAAGAAGTCTAGAAGA 1993
Query 2055 TGAACGAAACAACCCTTTAAGATTGTTTCATCTGTTCTGAGAAAACAAAAACAAAGAGTA 2114
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 TGAGTGAAACAACCCTTTAAGATTGTTTCATCTGTTCTGAGAAAACAAAAACAAAGAGTA 2053
Query 2115 CTTAGCCCCAAAATTTCCATTGTTCTTTTTCTTTTTGGATTCATCAAGTTTTAGTTGTCT 2174
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2054 CTTGGCCCCAAAATTTCCATTGTTCTTTTTTTTTTTGGATTGATCAAGTTTTAGTTGTCT 2113
Query 2175 TGACCCATTTAAGATTTTGGTTAATTTCTCGTTTGCAT-TGCCTGAATTC 2223
|||||||||||||||||||||| ||||||||||||| | | |||||||||
Sbjct 2114 TGACCCATTTAAGATTTTGGTTCATTTCTCGTTTGCGTGT-CCTGAATTC 2162
> Ahg908324 jgi|Araly1|908324|Al_scaffold_0002_1405
Length=1791
Score = 1448 bits (784), Expect = 0.0
Identities = 902/958 (94%), Gaps = 11/958 (1%)
Strand=Plus/Plus
Query 1104 GCACGAGAACTTTGTGCTGCACTGCCCGGTATGTTTCCTGAGAGTATTATTCCTACATTG 1163
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 841 GCACGAGAACTTTGTGCTGCACTGCCCGGTATGTTTCCTGAGAGGGTTGTTCCTACATTG 900
Query 1164 CTTCAAGCTGCCGTTTTGGTGAGAGAAAACAAGGCTGCCAAAGCTGAAGAACTTTTGGGA 1223
||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 901 CTTCAAGCTACTGTTTTGGTGAGAGAAAACAAGGCTGCCAAAGCTGAACAACTTCTGGGA 960
Query 1224 CAGTGTGCCGAAAAATTCCCGGAAAAGTCTAAGTTGGTTCTCTTGGCCAGGGCACAAATT 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGTGTGCCGAAAAATTCCCGGAAAAGTCTAAGTTGGTTCTCTTGGCCAGGGCACAAATT 1020
Query 1284 GCTGCTTCTGCCAGTCATCCTCATGTAGCAGCAGAGTCCCTATCCAAAATACCTGATATT 1343
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 GCTGCTTCTGCCAGTCATCCTCATGTAGCAGCAGAGTCCCTGTCCAAAATACCTGATATT 1080
Query 1344 CAGCATTTGCCTGCAACTGTTGCCACCATTGTCGCCCTCAAAGAGCGTGCTGGAGACAAT 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 CAGCATTTGCCTGCAACTGTTGCCACCATTGTCGCCCTCAAAGAGCGTGCTGGGGACAAT 1140
Query 1404 GATGGTGCTGCTGCTGTTCTTGACTCAGCAATTAAATGGTGGTCAAATTCGATGACCGAG 1463
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1141 GATGGTGCTGCTGCTGTTCTTGATTCAGCAATTAAATGGTGGTCGAATTCGATGACTGAG 1200
Query 1464 AGCAGTAAGCTTAGGGTATTGATGCCAGAGGCTGCTGCCTTCAAGCTAAGGCATGGTCAA 1523
|||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1201 AGCAATAAGCTTAGTGTATTGATGCCGGAGGCTGCTGCCTTCAAGCTCAGGCATGGTCAA 1260
Query 1524 GAAGAGGAGGCTTCACGGCTATACGAGGAAATTGTGAAAAACCACAATAGCACAGATGCT 1583
||||||||||||||||||||||| ||||| ||||| ||||| || | ||||| |||||||
Sbjct 1261 GAAGAGGAGGCTTCACGGCTATATGAGGAGATTGTAAAAAAACAGAGTAGCATAGATGCT 1320
Query 1584 CTGGTTGGTCTTGTGACTACACTTGCTCGTGTCAATGTTGAGAAAGCAGAAAGTTATGAG 1643
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1321 CTGGTTGGTCTTGTGACTACACTTGCTCGTGTCAATGTTGAGAGAGCAGAAACTTATGAG 1380
Query 1644 AAACAGCTTAAGCCCCTACCAGGTTTGAAGGCTGTTGATGTGGATAAACTAGAAAAGACC 1703
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1381 AAACAGCTTAAGCCCCTACCAGGTTTGAAGGCGGTTGATGTGGATAACCTAGAAAAGACC 1440
Query 1704 TATGGTGCAAAACCCATTGAAGGCG-CTGCTGCTTCATCGAGTCaggaagaagtgaagaa 1762
| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1441 TCTGGTGCAAAACCCATTCAAGG-GTCTGCTGCTTCATCGAGTCAGGAAGAAGTGAAGAA 1499
Query 1763 agaaaaggcgaagaggaagaggaagagaaagCCAAAGTATCCCAAAGGATTTGATCCGGC 1822
||| ||||||||||||||||| || || |||||||||||||||||||| |||| |||
Sbjct 1500 AGAGAAGGCGAAGAGGAAGAG-AA-AG----CCAAAGTATCCCAAAGGATTCGATCAGGC 1553
Query 1823 AAACCCAGGTCCACCCCCAGACCCTGAAAGGTGGCTTCCCAGAAGGGAAAGGTCAAGTTA 1882
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1554 AAACCCAGGTCCACCCCCGGACCCTGAGAGATGGCTTCCCAGAAGGGAAAGGTCAAGTTA 1613
Query 1883 CAAACCCAAGAGGAAGGACAAGCGAGCAGCTCAAATCCGTGGCTCGCAGGGTGCGGTGAC 1942
|| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1614 CAGACCCAAGAGAAAGGACAAGCGAGCCGCTCAAATCCGTGGCTCGCAGGGTGCGGTGAC 1673
Query 1943 CAAGGATAAACAAGAAGCAGCTCCTTCAACTTCAAAGTCAAACCAAGTGGCCAGTTCTAA 2002
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1674 GAAGGTTAAACAAGAAGCAGCTCCTTCAACTTCAAAGTCAAACCAAGCAGCCAGTTCTAA 1733
Query 2003 AGGGAATGCACCTGCGCCTTC--C-TCTAAGGCCTCAAAAAAGAAGTCTAGAAGATGA 2057
|| |||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1734 AGCCAATGCAGCTGCGCCTTCTTCCTCTAAGGCCTCAAAAAAGAAGTCTAGAAGATGA 1791
Score = 571 bits (309), Expect = 7e-162
Identities = 496/581 (85%), Gaps = 34/581 (6%)
Strand=Plus/Plus
Query 508 AGAAACTGACCAAGTCCCAGATTGAGACGTTAGAGGTTAATTTAGTCGCCGG-GTTGATT 566
||||||| | |||||| ||||| || ||||||||||||| |||||| ||| ||||||
Sbjct 275 AGAAACTAAGCAAGTCTAAGATTAAGTGGTTAGAGGTTAATCTAGTCG-CGGCGTTGATA 333
Query 567 TCAGCTGGAAAAGCTTCTCAAGTGCAGAAAA-CATTGGAGAGTTTGAAGATCAAACCAAC 625
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 334 GCAGCTGGAAAAGCTTCTCAAGTGC-TAAAAGCATTGGAGAGTTTGAAGATCAAACCAAC 392
Query 626 TAGTAGTTTTGAGTTGGCTTATAATACTGCTTGCTCTTTGATTGAAAACAATAACTATGC 685
| || || | | ||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 393 GACTACTTATCAATTGGCTTATAATACTGCTTGCTCTTTGATCGAAAACAATGACTATGC 452
Query 686 TGATGCTGAACAACTTTTGCTCACTGCCAGGAGAATTGGTCAGGAAACC-CTCA-ATGA- 742
||||| ||||||||||||||||||||||||||| || || |||| |||| |||
Sbjct 453 TGATGTTGAACAACTTTTGCTCACTGCCAGGAG--TT-ATC---TAACCTCTCATTTGAC 506
Query 743 TGACGA-CAT-C--G-CTT-TAAC-C-GA-TGAAGA-AATTGAGAT-TGAGCTGGCCCCA 791
|| || | | | ||| ||| | | ||| || || | | ||| |||||| ||
Sbjct 507 TGTTGATTTTCCAAGTCTTGAAACTCTCACTGACGATAAAT--CTTCTGATCTGGCCTCA 564
Query 792 ATTGCTGTTCAATTAGCATATGTCCAACAGATCCTTGGACAAACTCAAGAATCCACCAGC 851
|||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 565 ATTGCTGTTCAACTAGCATATGTTCAACAGGTTCTTGGACAAACTCAAGAATCCACCAGC 624
Query 852 TCTTATGTAGAT-TTCATTAAACGAAATCTGGCTGATGAACCTTCACT-T-GCTGTTGCT 908
||||||||||| || || ||||| ||||||| |||||||| || ||| | |||||||||
Sbjct 625 TCTTATGTAGACATT-ATAAAACGTAATCTGGGTGATGAAC-TT-ACTATTGCTGTTGCT 681
Query 909 GTAAACAACCTTGTTGCCTTGAAAGGTTTCAAAGATATTTCTGATGGCTTGAGGAAGTTT 968
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 682 GTGAACAACCTTGTTGCCTCGAAAGGTTCCAAAGATATTTCTGATGGCTTGAGGAAGTTT 741
Query 969 GATCTGCTGAAAGACAAAGACTCCCAAACTTTTCAGCTTTCTCAAGCACTT-GATGCAAA 1027
|||| ||||||||| ||||||||||||| ||||||||||||||||| || | ||||||||
Sbjct 742 GATCGGCTGAAAGAAAAAGACTCCCAAAATTTTCAGCTTTCTCAAG-ACCTCGATGCAAA 800
Query 1028 GCTTTCACAGAAACATAAGGAGGCTATATATGCCAATCGCG 1068
||||||||||||| |||||||||||||||||||||||||||
Sbjct 801 GCTTTCACAGAAAAATAAGGAGGCTATATATGCCAATCGCG 841
Score = 143 bits (77), Expect = 6e-33
Identities = 150/182 (82%), Gaps = 17/182 (9%)
Strand=Plus/Plus
Query 113 TCCAGCAATCGAAGATCTCTTCACTTCCCTCCACCAACATATCAA-GGAT-AC-TA---A 166
|||||||||||||||||||||| |||||||| | |||||||||| |||| || || |
Sbjct 39 TCCAGCAATCGAAGATCTCTTCTCTTCCCTCAATAAACATATCAAGGGATCACATATCCA 98
Query 167 ---A--T--A--TGAAGAAGCCGTCAAGGTCGCTGATCAAGTTTTGTCGATTGTACCTAC 217
| | | |||| ||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 99 GCGATCTGAATTTGAACAAGTCGTCAAGGTCGCTGATCAAGTTTTGTCGATTTTACCTTC 158
Query 218 CGATGAGGATGCGATCCGATGCAAAGTTGTGGCTCTGATAAAAGACGATAA-GTTCGATG 276
|||||||||||| ||||||||||||||||||||||| || ||| | | || |||| |||
Sbjct 159 CGATGAGGATGCAATCCGATGCAAAGTTGTGGCTCTAATCGAAG-CAAAAAAGTTCAATG 217
Query 277 AT 278
||
Sbjct 218 AT 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5