BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67690.1
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315784 jgi|Araly1|315784|fgenesh1_pm.C_scaffold_2000817 2433 0.0
> Ahg315784 jgi|Araly1|315784|fgenesh1_pm.C_scaffold_2000817
Length=2958
Score = 2433 bits (1317), Expect = 0.0
Identities = 1416/1464 (97%), Gaps = 6/1464 (0%)
Strand=Plus/Plus
Query 160 GGTCTTCCTGGTTGTGATACTGTTTGTGTGAACCTATCTGCGAAGGAGATTCTCGATTTA 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 GGTCTTCCTGGTTGTGATACTGTTTGTGTGAACCTATCTGCGAAGGAGATTCTCGATTTA 147
Query 220 GCTGAAGAAATTATTCACAAGTCTACACGAGTTCATGATGCTGTTGCTTTGGTTTCTCTA 279
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GCTGACGAAATTATTCACAAGTCTACACGAGTTCATGATGCTGTTGCTTTGGTTTCTCTA 207
Query 280 GATAAGCTCTCTTATGAGAATGTTGTATTGCCGTTGGCTGAATTGGAAGCTAGACAACTC 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GATAAGCTCTCTTATGAGAATGTTGTATTGCCGTTGGCTGAATTGGAAGCTAGACAACTC 267
Query 340 TCGCTTATACAATGTTGTGTGTTTCCTAAGATGTTATCGCCTCACGATAATGTTCGTAAA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TCGCTTATACAATGTTGTGTGTTTCCTAAGATGTTATCGCCTCACGATAATGTTCGTAAA 327
Query 400 GCTAGTACAGAAGCGGAGCAGAAAATCGACGCTCATATACTTTCCTGCAGAAAACGTGAA 459
|||||| | ||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 328 GCTAGTGCTGAAGCTGAGCAGAAAATCGACGCTCATATTCTCTCCTGCAGAAAACGTGAA 387
Query 460 GATGTTTACCGGATTATCAAAATTTATGCTGCAAAGGGAGAATCGATTTCTCCGGAAGCT 519
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 388 GATGTTTACCGGATTATCAAAATTTATGCTGCAAAGGGAGAATCGATTGCTCCTGAAGCT 447
Query 520 AAATGTTACCTACAGTGTCTGGTTAGAGACTTTGAGGACAATGGTCTGAACCTTACTGCA 579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AAATGCTACCTACAGTGTCTGGTTAGAGACTTTGAGGACAATGGTCTGAACCTTACTGCA 507
Query 580 ATAAAAAGAGAGGAAGTTGAGAGACTAA-AATATGAAATTGATGAGCTTAGCTTGCGATA 638
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 508 ATAAAAAGAGAGGAAGTTGAGAGACTAACAA-ATGAAATTGATGAGCTTAGCTTGCGATA 566
Query 639 CATTCAGAATTTAAATGAAGATAGTTCTTGTCTCTTTTTTACTGAGGATGAGCTTGCTGG 698
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CATTCGGAATTTAAATGAAGATAGTTCTTGTCTCTTTTTTACTGAGGATGAGCTTGCTGG 626
Query 699 TTTGCCTCTAGAATTTCTTCAGAATTTAGAAAAAACTCAAAATAAAGAATTTAAGCTCAC 758
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 627 TTTGCCTCTAGAATTTCTTCAGAGTTTGGAAAAAACTCAAAATAAAGAATTTAAGCTCAC 686
Query 759 CTTGGAAAGTCGTCACGTCGCAGCTATTCTAGAGTTGTGCAAGATAGCCAAGACAAGGAA 818
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 687 CTTGGGAAGTCGTAACGTCGCAGCTATTCTAGAGTTGTGTAAGATAGCCAAGACAAGGAA 746
Query 819 GACGGTGGCTATGGCATATGGAAAGAGATGTGGAGATACCAATATTCCTGTGTTACAAAG 878
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 747 GACGGTAGCTATGGCATATGGAAAGAGATGTGGAGATACCAATATTCCGGTGTTACAAAG 806
Query 879 ATTGGTTCAGTCACGCCATAGATTAGCAT-GCGTA-TGTGGTTATGCACACTTCGCAGAT 936
||||||||| ||||||||||||||||| | |||| | ||||||| |||| |||||||||
Sbjct 807 ATTGGTTCATTCACGCCATAGATTAGC-TCGCGTCCT-TGGTTATTCACATTTCGCAGAT 864
Query 937 TATGCTCTTGATCGTAGGATGTCAAAGACATCAATGAGGGTGATCAGGTTCCTGGAGGAC 996
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 865 TATGCTCTTGATCGCAGAATGTCGAAGACATCAATGAGGGTGATTAGGTTCCTGGAGGAC 924
Query 997 ATTTCTTCCAGTTTAACTGACTTGGCTATTAGAGAGTTTTCCATTTTGGAAGACTTGAAG 1056
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 925 ATCTCTTCCAGTTTAACTGACTTGGCTATTAGAGAGTTTTCCATTTTGAAAGACTTGAAG 984
Query 1057 AGGAAAGAAGAAGGGGAGATTCCATTTGGCGTAGAAGATCTTTTATACTACATAAAGAGG 1116
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 985 AGGAAAGAAGAAGGGGAAATTCCATTTGGCGTAGAAGATCTTTTATATTACATAAAGAGG 1044
Query 1117 GTAGAGGAGTTGCAGTTTGATCTTGATTTTGGAGATATCCGGCAATATTTTCCTGTCAAC 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GTAGAGGAGTTGCAGTTTGATCTTGATTTTGGAGATATCCGGCAATATTTTCCTGTCAGT 1104
Query 1177 TTGGTCCTTTCCGGGATCTTTAAAATATGTCAGGACCTTTTTGGAATAAAATTTGAGGAG 1236
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1105 TTGGTCCTTTCCGGGATATTTAAAATATGTCAGGACCTTTTTGGAATAAAAATTGAGGAG 1164
Query 1237 GTTACAGAAGTTGATGTCTGGTATCATGATATTCGAGCTTTTGCCGTCTTTGACTCAGGA 1296
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1165 GTTACAGAAGTTGATGTCTGGTATCATGATGTTCGAGCTTTTGCCGTCTTTGACTCCGGA 1224
Query 1297 TCTGGAAAGCTTTTGGGATATTTCTATCTTGACATGTTTACAAGGGAAGGAAAATGTAAT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TCTGGAAAGCTTTTGGGATATTTCTATCTTGACATGTTTACAAGGGAAGGAAAATGTAAT 1284
Query 1357 CACAGCTGTGTGGTGGCTCTTCAGAATAACGCACTGTTCTCCAATGGTGCATGTCAGATT 1416
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CACAGCTGTGTGATGGCTCTTCAGAATAACGCACTGTTCTCCAATGGTGCATGTCAGATT 1344
Query 1417 CCTGTGGCGTTGCTTATTGCACAGTTTGCAAAGGATGGTAGTGGTGAAGCTGTGCCATTG 1476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1345 CCTGTGGCGTTGCTTATTGCACAGTTTGCAAAGGATGGTAGTGGTGAATCTGTGCCATTG 1404
Query 1477 GGATTTTCTGACGTGGTTAATCTTTTTCATGAGTTTGGCCATGTGGTCCAACATATCTGC 1536
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GGATTCTCTGAGGTGGTTAATCTTTTTCATGAGTTTGGCCATGTGGTCCAACATATCTGC 1464
Query 1537 AATCGTGCTTCATTTGCTAGATTCTCGGGCCTACGTGTTGACCCCGACTTTCGGGAGATT 1596
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1465 AATCGTGCTTCATTTGCTAGATTCTCAGGCCTACGTGTTGACCCTGACTTTCGGGAGATC 1524
Query 1597 CCTTCTCAGTTATTGGAAAACTGG 1620
||||||||||||||||||||||||
Sbjct 1525 CCTTCTCAGTTATTGGAAAACTGG 1548
Score = 795 bits (430), Expect = 0.0
Identities = 448/457 (98%), Gaps = 0/457 (0%)
Strand=Plus/Plus
Query 1666 GATATCACCAAGCCACTTGTGGATGAAGTCTGCAAAACACTCAAACGTTGGCGATATTCT 1725
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GATATTACCAAGCCACTTGTGGATGAAGTCTGCAAAACACTCAAACGTTGGCGATATTCT 1611
Query 1726 TTCTCTGCACTAAAGTCGCTTCAGGAGATATTATACTGTCTATTTGATCAAATAATATAT 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TTCTCTGCACTAAAGTCGCTTCAGGAGATATTATACTGTCTATTTGATCAAATAATATAT 1671
Query 1786 TCGGACGATGATGCTGACTTACTCCAGCTAATCAGGAGTCTTCATCCAAAGGTAATGATA 1845
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1672 TCGGACGATGACGCTGACTTACTGCAGCTAATCAGGAGTCTTCACCCAAAGGTAATGATA 1731
Query 1846 GGGCTACCAGTGGTGGAAGGAACCAACCCTGCTTCATGTTTCCCACGTGCTGTAATTGGC 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GGGCTACCAGTGGTGGAAGGAACCAACCCTGCTTCATGTTTCCCACGTGCTGTAATTGGC 1791
Query 1906 TCTGAAGCAACATGTTACAGTCGTTTATGGAGTGAGGTGTATGCTGCTGATATATTTGCT 1965
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TCCGAAGCAACATGTTACAGTCGTTTATGGAGTGAGGTGTATGCTGCTGATATATTTGCC 1851
Query 1966 TCAAAATTTGGAGATGGGCATCCGAATCTATATGCCGGCTTGCAGTTCAGAGACAAAGTG 2025
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1852 TCAAAATTTGGGGATGGGCATCCGAATCTGTATGCCGGCTTGCAGTTCAGAGACAAAGTG 1911
Query 2026 TTGGCCCCAGGAGGAGGCAAAGAACCAATGGAACTTCTCACCAATTTTCTTGGAAGGGAA 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 TTGGCCCCAGGAGGAGGCAAAGAACCAATGGAACTTCTCACCAATTTTCTTGGAAGGGAA 1971
Query 2086 CCATCAACACAAGCTTTCATCGCTAGCCGGACAAACT 2122
|||||||||||||||||||||| ||||||||||||||
Sbjct 1972 CCATCAACACAAGCTTTCATCGATAGCCGGACAAACT 2008
Score = 167 bits (90), Expect = 3e-40
Identities = 90/90 (100%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1 ATGACGGAAAACGAAGGAAACGACAAGAAAATCGAAGGATCTAATCCTAAGAAGAAGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGGAAAACGAAGGAAACGACAAGAAAATCGAAGGATCTAATCCTAAGAAGAAGCTC 60
Query 61 AACGTTGTAACCTTCACCGGAGCGGCGGGT 90
||||||||||||||||||||||||||||||
Sbjct 61 AACGTTGTAACCTTCACCGGAGCGGCGGGT 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80256146215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5