BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67710.1
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926035 jgi|Araly1|926035|scaffold_201596.1 2470 0.0
Ahg888921 jgi|Araly1|888921|Al_scaffold_0007_907 80.5 4e-14
> Ahg926035 jgi|Araly1|926035|scaffold_201596.1
Length=1633
Score = 2470 bits (1337), Expect = 0.0
Identities = 1545/1639 (94%), Gaps = 40/1639 (2%)
Strand=Plus/Plus
Query 221 cttgttttcGCCGGCGATCATGGAGAAAAGCGGCTTCTCTCCCGTCGGTCTAAGGGTTCT 280
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CTTGTTTTTGCCGGCGATCATGGAGAAAAGCGGCTTCTCTCCCGTCGGTCTAAGGGTTCT 62
Query 281 TGTCGTAGACGATGATCCAACTTGGCTCAAGATTCTCGAGAAAATGCTCAAGAAGTGTTC 340
||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 63 TGTGGTGGATGATGACCCAACTTGGCTCAAGATTCTCGAGAAAATGCTCAAGAAGTGCTC 122
Query 341 TTACGAAGTAACGACCTGTGGATTAGCTAGAGAGGCTTTGAGGTTGCTGAGGGAGCGTAA 400
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 123 TTACGAAGTAACGACCTGTGGGTTAGCTAGAGAGGCTCTGAGGTTGCTGAGGGAGCGTAA 182
Query 401 AGATGGATATGATATCGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAGCT 460
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGACGGATACGATATCGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAGCT 242
Query 461 TCTTGAGCATGTTGGTCTTGAATTAGACCTCCCTGTAATAATGATGTCGGTGGACGGCGA 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 243 TCTTGAGCATGTTGGTCTTGAATTAGACCTCCCTGTAATAATGATGTCGGTGGATGGAGA 302
Query 521 AACAAGCCGAGTGATGAAGGGAGTGCAACACGGAGCTTGTGATTACCTCTTGAAGCCGAT 580
||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 303 AACAAGCAGAGTAATGAAAGGAGTGCAACACGGAGCGTGTGATTACCTCTTGAAGCCGAT 362
Query 581 AAGAATGAAGGAGTTAAAGATTATATGGCAACATGTTCTGAGAAAGAAGCTTCAAGAAGT 640
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AAGAATGAAGGAGTTGAAGATTATATGGCAACATGTTCTGAGAAAGAAGCTTCAAGAAGT 422
Query 641 GAGAGATATCGAAGGCTGTGGATACGAAGGAGGAGCG-GATTGGATCACTCGATACGATG 699
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 423 GAGAGATATCGAAGGCTGCGGATACGAAGGAGGAG-GTGATTGGATCACTCGATACGATG 481
Query 700 AAGCACATTTTCTTGGAGGTGGTGAAGATGTTTCTTTTGGGAAAAAGAGAAAAGACTTTG 759
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 482 AAGCACATTTTCTTGGAGGTGGTGAAGATGTTTCTTTTGGTAAAAAGAGAAAAGACTTTG 541
Query 760 ACTTTGAGAAGAAGCTTCTTCAAGATGAGAGTGATCCATCATCTTCTTCTTCCAAGAAAG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ACTTTGAGAAGAAGCTTCTTCAAGATGAGAGTGATCCATCATCTTCTTCTTCCAAGAAAG 601
Query 820 CTAGAGTTGTTTGGTCTTTTGAGCTTCATCATAAGTTTGTCAACGCCGTTAACCAAATCG 879
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 602 CTAGGGTTGTGTGGTCTTTTGAGCTTCATCAGAAGTTTGTCAACGCCGTTAACCAAATCG 661
Query 880 GATGCGATCACAAAGCTGGTCCCAAGAAGATATTGGATCTCATGAATGTTCCATGGCTCA 939
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 662 GATGCGATCACAAAGCTGGTCCCAAGAAGATATTGGACCTCATGAATGTTCCATGGCTCA 721
Query 940 CTAGAGAAAATGTTGCAAGCCACCTTCAGAAATATAGACTTTACCTGAGCAGATTAGAGA 999
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTAGAGAGAATGTTGCAAGCCACCTTCAGAAATATAGACTTTACCTGAGCAGATTAGAGA 781
Query 1000 AAGGAAAGGAGCTCAAGTGTTATTCAGGTGGCGTGAAGAATGCGGATTCATCTCCAAAAG 1059
||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 782 AAGGAAAGGAGCTCAAGTGTTATTCTGGTGGTGTGAAGAATATGGATTCATCTCCAAAAG 841
Query 1060 ATGTCGAAGTGAATTCAGGCTACCAAAGCCCTGGGAGGAGCAGCTATGTATTCTCTGGAG 1119
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 842 ATGTTGAAGTAAATTCAGGCTACCAAAGCCCTGGGAAGAGCAGCTATGTATTCTCTGGAG 901
Query 1120 GAAATTCTCTGATCCAAAAAGCAACAGAGATTGATCCAAAGCCACTTGCTTCAGCTTCTT 1179
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 902 GCAATTCTCTGATCCAAAAAGTAACAGAGATTGATCCAAAGCCACTTGCTTCAGCTTCTC 961
Query 1180 TGTCTGACCTCAACACCGATGTGATCATGCCTCCGAAAACAAAAAAGACGCGTATAGGAT 1239
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 962 TGTCTGACCCCAACACCGATGTGATCATGCCTCCGAAAACAAAAAAGACGCGTATAGGCT 1021
Query 1240 TTGATCCTCCCAT-T--TCCTCCTCTGCGTTTGACTCTCTGCTTCCTTGGAATGATGTTC 1296
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TTGATCCTCCCATATCCTCCTCCTCTGCGTTTGACTCTCTGCTTCCTTGGAATGATGTTC 1081
Query 1297 CAGAGGTC-CTTGAATCGAAGCCGGTTCTGTATGAGAATAGCTTTCTCCAGCAACAACCA 1355
| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1082 CTGAGA-CACTTGAATCGAAGCCGGTTCTATATGAGAATAGCTTTCTCCAGCAACAACCA 1140
Query 1356 TTGCCAAGTCAAAGTTCCTATGTTGCAAATTCTGCACCATCTCTCATGGAGGAGGAAATG 1415
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||
Sbjct 1141 TTGCCAAGTCAAAGTTCCTATGTTGCAAATTCTGTACCGTCTCTCATGGAAGAGGAGATG 1200
Query 1416 AAGCCTCCTTATGAGACACCAGCAGGAGGCAGTAGTGTGAATGCAGATGAGTTTCTCATG 1475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 AAGCCTCCTTATGAGACACCAGCAGGAGGCAGTAGTGTGAATGTAGATGAGTTTCTCATG 1260
Query 1476 CCACAAGACAAGATCCCTACTGTAACCCTTCAAGATTTGGATCCCTCTGCCAT------- 1528
|| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCGCAAGACAAGAACCCTACTGTAACCCTTCAAGATTTGGATCCCTCTGCCATATCCAAC 1320
Query 1529 --GAAGCTGCAGGAGTT---C--AA------C-A-CA-----GAGGCGATTCTGAGAAGC 1568
|||||| |||||||| | || | | || ||||||||||||||||||
Sbjct 1321 ATGAAGCTTCAGGAGTTTAGCTCAAATGTAACCAACAACACAGAGGCGATTCTGAGAAGC 1380
Query 1569 TTGAACTGGGAACTTCCAGAATCACATCATTCTGTTTCTTTAGACACTGACTTAGACTTG 1628
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 TTGAACTGGGAAC--C-AGAATCACATCATTCTGCTTCTTTAGACACTGACTTAGACTTG 1437
Query 1629 ACTTGGCTTCAAGGCGAGCGTTTTCTTGCAAACACCGGACTCCAGTTTCAAGATTACAGT 1688
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AGTTGGCTTCACGGCGAGCGTTTTCTTGCAAACACCGGACTCCAGTTTCAAGATTACAGT 1497
Query 1689 AGTAGCCCATCACTCCTATCTGAGCTCCCAGCCCACCTTAATTGGTATGGAAATGAGCGG 1748
||||||||||||||||||||||||||| || |||||||| | |||||||||| ||||||
Sbjct 1498 AGTAGCCCATCACTCCTATCTGAGCTCTCACCCCACCTT--T-GGTATGGAAACGAGCGG 1554
Query 1749 CTGCCTGACCCTGACGAGTATTCCTTCATGGTAGACCAAGGTTTATTCATATCTTAACCT 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTGCCTGACCCTGACGAGTATTCCTTCATGGTAGACCAAGGTTTATTCATATCTTAACCT 1614
Query 1809 TGTTCCAATAACTTCTTTT 1827
|||||||||||||| ||||
Sbjct 1615 TGTTCCAATAACTTATTTT 1633
> Ahg888921 jgi|Araly1|888921|Al_scaffold_0007_907
Length=1653
Score = 80.5 bits (43), Expect = 4e-14
Identities = 72/85 (85%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 891 AAAGCTGGT-CCCAAGAAGA-TATTGGATCTCATGAATGTT-CCATGGCTCACTAGAGAA 947
|||||| || || || |||| | || ||||| ||||||||| || ||||||||||||
Sbjct 619 AAAGCT-GTACCAAAAAAGATTCTT-GATCTGATGAATGTTGACA-AACTCACTAGAGAA 675
Query 948 AATGTTGCAAGCCACCTTCAGAAAT 972
|||||||||||||||||||||||||
Sbjct 676 AATGTTGCAAGCCACCTTCAGAAAT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77018475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5