BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67730.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475877 jgi|Araly1|475877|fgenesh2_kg.2__1007__AT1G67730.1 2154 0.0
> Ahg475877 jgi|Araly1|475877|fgenesh2_kg.2__1007__AT1G67730.1
Length=1380
Score = 2154 bits (1166), Expect = 0.0
Identities = 1313/1384 (95%), Gaps = 10/1384 (1%)
Strand=Plus/Plus
Query 26 aaaataaacaaaggagagagacagaagaaacagagagagTAGTTAATTCCGGTGGTTTTC 85
||| |||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTAAATAAAGAAAAGAGAGAGAAGAAACAGAGAGAGTAGTTAATTCCGGTGGTTTTC 60
Query 86 TGCTCATCTACTTCTATCCACCTTCGTCCCTTCCGCCCCAAAATTCAAttctctcttcct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TGCTCATCTACTTCTATCCACCTTCGTCCCTTCCGCCCCAAAATTCAATTCTCTCTT-CT 119
Query 146 t-tctctctct-t-tctccttaaaaactctaactttactcatctcatctccaaagtctcA 202
| ||||||||| | | ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 120 TCTCTCTCTCTCTCTTTCCTTAAAAACCCTAACTTTCCTCATCTCATCTCCAAAGTCTCA 179
Query 203 ACCTTTCTTCTCTAATGGAGATCTGCACTTACTTCAAATCACAACCCACTTGGCTCCTCA 262
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 180 ACCTTTCTTCTCTCATGGAGATCTGTACTTACTTCAAATCACAACCCACTTGGCTCCTTA 239
Query 263 TTCTCTTCGTTCTGGGGTCAATCTCAATCTTCAAATTCATCTTCACCCTCCTCAGATCTT 322
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCTCTTCGTTCTCGGGTCAATCTCAATCTTCAAATTCATCTTCACCCTCCTCAGATCTT 299
Query 323 TCTACATCTACTTCCTCCGACCATCCAAAAACCTCCGCCGATACGGTTCATGGGCAATCA 382
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 300 TCTACATCTACTTCCTCCGACCAGCCAAAAACCTCCGTCGTTACGGTTCATGGGCAATCA 359
Query 383 TCACCGGACCAACAGACGGAATCGGTAAAGCTTTCGCCTTTCAGTTAGCCCAGAAAGGTC 442
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 360 TCACCGGACCAACCGACGGAATCGGTAAAGCTTTCGCCTTTCAATTAGCCCAGAAAGGAC 419
Query 443 TTAACCTTATACTCGTTGCTCGTAACCCAGACAAGCTCAAAGATGTCTCTGATTCCATCA 502
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 420 TTAACCTTATACTCGTTGCTCGTAATCCAGACAAGCTTAAAGATGTCTCTGAATCCATCA 479
Query 503 GATCTAAGTATAGTCAAACTCAGATCTTGACCGTTGTGATGGATTTCTCTGGAGATATTG 562
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 GATCTAAGTATAGTCAAACTCAGATCTTGACTGTTGTGATGGATTTCTCTGGAGATATTG 539
Query 563 ATGAAGGTGTGAAACGGATTAAGGAGAGTATTGAAGGATTAGATGTTGGGATTTTGATTA 622
||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 540 ATGAAGGTGTGAAACGGATTAAGGAGACTATTGAGGGTTTAGATGTTGGGATTTTGATTA 599
Query 623 ATAATGCTGGCATGTCTTATCCTTATGCTAAGTATTTTCATGAGGTTGATGAAGAGTTGA 682
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATAATGCTGGCATGTCGTATCCTTATGCTAAGTATTTTCATGAGGTTGATGAAGAGTTGC 659
Query 683 TCAATAACTTGATTAAGATCAATGTTGAAGGAACTACTAAAGTTACTCAAGCTGTGTTGC 742
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 TTAATAACTTGATTAAGATCAATGTTGAAGGAACTACTAAAGTTACTCAGGCTGTGTTGC 719
Query 743 CTAATATGCTTAAGAGGAAGAAAGGTGCTATTATTAATATGGGTTCTGGTGCTGCTGCTC 802
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 CTAATATGCTTCAGAGGAAGAAAGGTGCTATTATTAATATGGGTTCTGGTGCTTCTGCTC 779
Query 803 TTATTCCTTCTTATCCTTTTTACTCTGTTTATGCTGGTGCTAAAACGTACGTGGATCAGT 862
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTATTCCTTCGTATCCTTTCTACTCTGTTTATGCTGGTGCTAAAACGTACGTGGATCAGC 839
Query 863 TCACAAAGTGTCTACATGTTGAGTATAAGAAGAGTGGGATTGATGTTCAATGCCAGGTTC 922
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 840 TCACTAAGTGTCTACATGTTGAGTACAAGAAGAGTGGAATTGATGTTCAATGCCAGGTTC 899
Query 923 CCTTGTATGTTGCAACAAAGATGACAAAAATAAGAAGAGCATCCTTCTTAGTTGCATCAC 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCTTGTATGTTGCAACAAAGATGACAAAAATAAGAAGAGCATCCTTCTTAGTTGCATCAC 959
Query 983 CAGAGGGTTACGCAAAGGCAGCACTGCGTTTTGTAGGCTATGAAGCACAATGCACACCGT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGAGGGTTACGCAAAGGCAGCACTGCGTTTTGTAGGCTATGAAGCACAATGCACACCGT 1019
Query 1043 ACTGGCCTCACGCTCTCATGGGTGCAGTTGTCTCTGCATTGCCCGAAAGCGTTTTTGAAT 1102
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 ACTGGCCTCACGCTCTCATGGGTGCAGTTGTCTCTGCATTACCCGAAAGCGTTTTTGAAT 1079
Query 1103 CATTTAACATCAAGAGATGCCTCCAGATCCGGAAGAAGGGTCTCCAAAAAGACTCCATGA 1162
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 CATTTAACATTAAGAGGTGCCTCCAGATTCGGAAGAAGGGTCTCCAAAAAGACTCCATGA 1139
Query 1163 AGAAAGAATGAATCTTCCAGGTTTAAGTTACTACCAAGAATTTCCTTCTTCTGAAGTTGT 1222
| |||||||||| ||| |||||||||||||| | || |||||| |||||||||||||||
Sbjct 1140 AAAAAGAATGAAACTTTGAGGTTTAAGTTACTGCTAAAAATTTC-TTCTTCTGAAGTTGT 1198
Query 1223 TGGTTTCTTGAAAAGCTTCTGTTCTGAATCTTTTGTAAGACTTGTACTCTTTAGTTTTCT 1282
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1199 TGGTTTCTTGAAAAGCTTCTGCTCTGAATCTTTTGTAAGACTTGTACGCTTTAGTTTTCG 1258
Query 1283 AAGTTTTTTATATTTTAAGATTAAAAACCCTAACGTACACGAATAATTTACTTCCTCT-- 1340
|||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 1259 AAGTTTCCG-TATTTTAAGATTCAAAACCCTAACGTACACGAATCATTTACATCCTCTCT 1317
Query 1341 GTTTCTATTTATTAATTTAAGCAGTGTTGTATT-GAATGTGTTTTTGCTTATGGTTTGCG 1399
|||||||||||||||||||| || ||||||||| ||||||| ||| || |||||||||||
Sbjct 1318 GTTTCTATTTATTAATTTAAACAATGTTGTATTTGAATGTGATTT-GCGTATGGTTTGCG 1376
Query 1400 TCTC 1403
||||
Sbjct 1377 TCTC 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5