BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67740.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475878 jgi|Araly1|475878|fgenesh2_kg.2__1008__AT1G67740.1 1314 0.0
> Ahg475878 jgi|Araly1|475878|fgenesh2_kg.2__1008__AT1G67740.1
Length=841
Score = 1314 bits (711), Expect = 0.0
Identities = 803/847 (95%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 1 CTCCAACTCACTTCTCATTGGATAAGACAACTATCAAGAAGCCTTCAATTTCCATTGGTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 CTCCAACTCACTTCTCATTGGATAAGACAACTATCAAGAAGCCTTCAATTTCAATTGGCC 60
Query 61 CTCCTCTCTCCTTCTATAATCCCAAAAACcatctcacaaactcatcaaacctctttctca 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 61 CTCCTCTCTCCTTCTATAATCCCAAAAACCATCTCACAAACTCCTCAAACCTC--TCT-- 116
Query 121 tctcatcttcaagccatctccgatcatcatcaGACAATGGCAGCAGCTATGGCAACAGCA 180
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 117 TCTCATCTTCAAGCCATCTCCG---ATCATCAGACAATGGCAGCAACTATGGCAACAGCA 173
Query 181 ACCAAGTGCATGTCTCTAAACCCATCTCCTCCTaaactccaaaaccaaaccaaatccaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 ACCAAGTGCATGTCTCTAAACCCATCTCCTCCTAAACTCCAAAACCAAACCAAACCCAAA 233
Query 241 ccattcatctccctaccaaccccaccaaaaccaaacGTCTCTCTCGCCGTCACAAGCACC 300
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 234 CCATTCATCTCCCTACCAACCCCACCAAAACCTAACGTCTCTCTCGCCGTCTCAAGCACC 293
Query 301 GCCCTAGCCGGAGCCGTCTTCTCTTCCCTCAGCTACTCTGAGCCAGCTTTAGCCATCCAA 360
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 294 GCTCTAGCCGGAGCCGTCTTCTCTTCTCTCAGCTACTCCGAGCCAGCTTTAGCCATCCAA 353
Query 361 CAGATCGCTCAGCTCGCTGCAGCAAACGCCAGTAGCGACAACCGTGGCTTAGCTCTTCTC 420
|||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 354 CAGATCGCCCAGCTCGCCGCAGCAGACGCCGGTAGCGACAACCGTGGCTTAGCTCTTCTC 413
Query 421 CTTCCCATCGTCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAAC 480
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTTCCTATTATCCCAGCCATTGCATGGGTCCTTTACAACATCCTCCAGCCAGCTATTAAC 473
Query 481 CAGGTCAACAAGATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAGGTCAACAATATGCGTGAGAGTAAAGGTATCGTTGTTGGTCTAGGTATTGGTGGTGGT 533
Query 541 CTTGCAGCGTCAGGGCTTTTGACTCCACCTCCGGAGGCTTATGCTGCGGCAGAAGCGGCG 600
||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||
Sbjct 534 CTTGCAGCGTCAGGGCTTTTGACTCCACCACCAGAGGCTTACGCGGCGGCAGAAGCGGCA 593
Query 601 GCTGCTAGTTCAGACAGCAGAGGACAGTTGTTGTTGATTGTTGTGACACCGGCACTACTT 660
|| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 594 GCAGCTGGTTCAGACAGCAGAGGACAGCTGTTGTTGATTGTTGTGACACCTGCACTACTT 653
Query 661 TGGGTTCTGTACAATATCTTGCAGCCAGCTTTGAACCAAATCAACAAGATGAGGTCTGGG 720
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 TGGGTTCTGTACAATATATTGCAGCCAGCTTTGAACCAACTCAACAAGATGAGGTCTGGG 713
Query 721 GATTAAAATCTtatatatata-taatattattataAATCATCTTTGGGATTCAAATGTAA 779
|| |||||||||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 714 GACTAAAATCTTATATATATAATTATATTATTATTAATCATCTTTGGGATTCAAATGTAA 773
Query 780 AATTAATCCTTTGTTTTATGGACAGTTTTATGTTTACATTTTTGGACTAATATCGTTTCT 839
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 774 AATTAATCCTTTGTTTTATGGACAGTTCTATGTTTAAATTTTTGGACTAATATCATTTCT 833
Query 840 CTTATCG 846
||||||
Sbjct 834 TTTATCG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5