BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67750.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475879 jgi|Araly1|475879|fgenesh2_kg.2__1009__AT1G67750.1 2551 0.0
> Ahg475879 jgi|Araly1|475879|fgenesh2_kg.2__1009__AT1G67750.1
Length=1639
Score = 2551 bits (1381), Expect = 0.0
Identities = 1563/1648 (95%), Gaps = 23/1648 (1%)
Strand=Plus/Plus
Query 1 ATCACCAAACAAACAAACACATTCAAATCTCATAAACACATTGATAAGTAAAAATCCTCT 60
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1 ATCACCAAACAAACAAACACATTCAAATCTCATAAACACATTAATAAGT-AAAATCCTCT 59
Query 61 CGAGAGACAAGAATGAGAATGACACTTGTTCACTTGTCTCTCTCCCTCTTCTCATGTCTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGAGAGACAAGAATGAGAATGACACTTGTTCACTTGTCTCTCTCCCTCTTCTCATGTCTC 119
Query 121 CTCCTTGTCCTTTCTCCGACCTTCATTGCCTCCACTCCCGTCTCCGAACCCGAACTCGTA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 CTCCTTGTCCTTTCTCCGACCTTCATTGCCTCCACTCCCGTCTCCGACCCCGAACTCGTA 179
Query 181 GTTCAAGAAGTTAACGAAAAGATTAATGCGTCTAGGAGGAATCTAGGCGTGCTCTCATGT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTCAAGAAGTTAACGAGAAGATTAATGCGTCTAGGAGGAATCTAGGCGTGCTCTCATGT 239
Query 241 GGGACCGGAAATCCAATTGACGACTGTTGGAGATGCGACCCGAAATGGGAGAAAAACCGA 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 GGGACCGGAAATCCAATTGACGACTGTTGGAGATGCAACCCGAAATGGGAGAAAAACCGA 299
Query 301 CAACGGTTAGCCGATTGCGCGATCGGGTTTGGCAAACACGCAATCGGTGGTCGTGACGGT 360
|||| | |||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 300 CAACAGCTAGCGGATTGCGCGATCGGGTTTGGGAAACACGCAATCGGTGGCCGTGACGGT 359
Query 361 AAAATCTACGTGGTGACTGACTCGAGTGACAAAGACGTGGTTAACCCTAAACCCGGAACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 AAAATCTACGTGGTGACTGACTCGAGTGACAAAGACGTGGTTAACCCTAAATCCGGAACC 419
Query 421 CTTAGACACGCGGTGATCCAAGACGAGCCACTATGGATCATCTTCGCGCGTGACATGGTC 480
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 CTAAGACACGCAGTGATCCAAGACGAGCCGCTATGGATCATCTTCGCGCGTGACATGGTT 479
Query 481 ATAAAACTAAAAGAAGAGCTGATTATGAACTCTTTCAAGACTATAGACGGCCGTGGAGCG 540
||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 480 ATAAAGCTAAAAGAAGAGCTCATCATGAACTCTTTCAAGACCATAGACGGCCGTGGAGCG 539
Query 541 AGCGTCCACATTGCTGGTGGCGCGTGTATCACCGTCCAGTACGTGACCAACATCATCATC 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 AGCGTCCACATTGCTGGTGGCGCGTGCATCACCGTCCAGTACGTGACCAACATCATCATC 599
Query 601 CACGGTGTTAACATCCATGACTGTAAAAGAAAGGGGAATGCTTACGTTAGAGACTCTCCG 660
|||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 CACGGTCTCAACATCCACGACTGTAAAAGGAAGGGGAATGCTTACGTTAGAGACTCTCCG 659
Query 661 TCGCATTATGGGTGGAGGACAGCGTCTGACGGTGACGCCGTCTCGATTTTTGGTGGCTCC 720
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 660 TCGCATTACGGGTGGAGGACGGCGTCTGATGGTGACGCCGTCTCGATTTTTGGTGGGTCA 719
Query 721 CACGTGTGGGTAGACCATTGCTCGTTGTCCAACTGCGCTGACGGTCTGATAGACGCCATT 780
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 720 CACGTGTGGGTAGACCATTGCTCGTTGTCTAACTGCGATGACGGTCTGATCGACGCCATT 779
Query 781 CATGGATCAACGGCCATTACTATCTCTAATAACTATTTGAGTCACCACAATAAAGTCATG 840
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 780 CATGGATCAACGGCCATTACGATCTCTAATAACTATTTGACTCACCACAATAAAGTAATG 839
Query 841 CTTTTGGGACACAGTGATTCGTACACGAGAGACAAGAACATGCAAGTCACCATTGCCTTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTTTGGGACACAGTGATTCGTACACGAGAGACAAGAACATGCAAGTCACCATTGCCTTT 899
Query 901 AATCACTTTGGAGAAGGTCTTGTTCAGAGAATGCCAAGATGTAGACATGGATATTTTCAT 960
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 AATCACTTTGGGGAAGGTCTTGTTCAAAGAATGCCAAGATGTAGACATGGATATTTTCAT 959
Query 961 GTGGTGAATAATGATTATACACATTGGCAAATGTATGCAATTGGTGGAAGTGCAGCTCCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTGGTGAATAATGATTATACACATTGGCAAATGTATGCAATTGGTGGAAGTGCAGCTCCA 1019
Query 1021 ACGATTAACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGGTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACGATTAACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGGTG 1079
Query 1081 ACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGGAGATCGGAAGGT 1140
|||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1080 ACTAAATACGAAGACGCACCACAAAGCAAATGGAAGAAATGGAACTGGAGATCAGAAGGT 1139
Query 1141 GATTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGGGTGGAGGAGCCTCTTCAAGCTAT 1200
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 GACTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGGGTGGAGGAGCTTCTTCAAGCTAT 1199
Query 1201 GCTAAGGCTTCGAGTTTGTCGGCTAGACCGTCCTCATTGGTGGCTTCAGTCACGTCCAAT 1260
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1200 GCAAAGGCTTCGAGTTTGTCGGCTAGACCGTCCTCATTAGTGGCTTCGGTCACGTCTAAT 1259
Query 1261 GCTGGTGCACTCTTTTGTAGAAAAGGATCACGATGTTAATCCAATCCATCTTTTCAAAAT 1320
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| |
Sbjct 1260 GCTGGTGCACTCTTTTGTAGAAAAGGATCTCGATGTTAATCCGATGCATCTTTTCAAATT 1319
Query 1321 TATATATATAATCCATCCAATCTAATTAATTAAAAAGATAAAGAAGAGGATGCATGTTGT 1380
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATATATATAATCCA---A-TCTAATTAATTAAAAAGATAAAGAAGAGGATGCATGTTGT 1375
Query 1381 CCCTGGTATGTCAATTTTTCGTTACCCTTTAGtttttttttATTGTGGGGAGGGTTAAAG 1440
||||||||||||||||||||||||||||||||||||| || || | ||| ||||||||||
Sbjct 1376 CCCTGGTATGTCAATTTTTCGTTACCCTTTAGTTTTTATT-AT-G-GGG-AGGGTTAAAG 1431
Query 1441 TAGTAAGATGGATTCGATGTGTATACTAAAGTTATGTGTGGATTCCCTTTGGACCAATGG 1500
| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1432 TTGTAAGATGGATTTGATGTGTATACTAAAGTAATGTGTGGGTTCCCTTTGGACCAATGG 1491
Query 1501 GTTTCTTTAAAACTTTTTGGAGTAGGGACCAATGTTTATGTTGTGGTGGGGATA---ATG 1557
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1492 GTTTCTTTTAAACTTTTTGGAGTAGGGACCAATGTTTATGTTGTGGTGGGGATATGTATG 1551
Query 1558 TC-T--GTACAATTGCTAAGCGATTATTGTTGATTTCTTATATA-T--TG--T-A--TCA 1606
| | ||||||||||||||||| ||||||||||||||||||| | | | | |||
Sbjct 1552 TAGTATGTACAATTGCTAAGCGAATATTGTTGATTTCTTATATTGTAATAAATTAAATCA 1611
Query 1607 ACATCTTAATTATTAACATCCGTGTGTT 1634
||||||||||||| ||||||||||||||
Sbjct 1612 ACATCTTAATTATCAACATCCGTGTGTT 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5