BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G67770.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1 1845 0.0
> Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1
Length=1560
Score = 1845 bits (999), Expect = 0.0
Identities = 1428/1619 (88%), Gaps = 94/1619 (6%)
Strand=Plus/Plus
Query 1 ATGTCTGTCACCGGACCATTCAGTCACCCAACAAACCTTAACCCAACAGCTCCGGCGTTC 60
||||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 ATGTCAGTAACCGGACCATTCAGTCACCCAAGAAACCTTAACCCAACAGCTCCGGAGTTC 60
Query 61 TTTCCGGCGATAAACCAACACCAAAACCAAAACCCCTCCTTAATTCCGACAAGATTCTtc 120
|| |||||| | | |||||||||||||| ||| |||||||||||| |
Sbjct 61 TTCCCGGCG----------A-C-AAACCAAAACCCCTTCTTTATTCCGACAAGA----T- 103
Query 121 ctccctcatccccctcctcctcctcctcctccgccgccgccgctatacttttcttatttc 180
| || | ||| | ||||| |||||| || |||||| ||| |||||| |||
Sbjct 104 -T--CT-A----CCT-C-CCTCCGCCTCCT---CCTCCGCCG---TACCTTTCTT-TTT- 145
Query 181 tctctccctcctcctcctcctcctcctcATCTTCCACCGACTTCAGTAACACCAACCAGA 240
|| ||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 146 TCCCTCTC-CCTCCTCCTCCTCCTCCTCATCTTCCACCGACTTCAATAACACCGACCAGA 204
Query 241 GCCGTGATGTTATTACAAGTCCCAGCT-ACCGTCACTGAGACATCTCTAAGACGAGACAT 299
|||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct 205 GCCGTGATGTTATTACCAGTCCCAGCTGA-CGTCACCGAGACATCTCTAAGACGAGACAT 263
Query 300 GGAACTATTCGGTGAAGTCCGTGGAGTCCAAATGGAAAGAGCACATGAAGGAATCGTGAT 359
|||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 264 GGAACTGTTCGGTGAAGTCCGTGGAGTCCAAATGGAAAGAGTAGATGAAGGAATCGTGAC 323
Query 360 TTTCCATTTCTACAATCTAATAAACTCACAAAGAGCTTTTAACGAGATACGTTACCGTCA 419
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 324 CGTCCATTTCTACAATCTAAGAAACTCACAAAGAGCTTTGAACGAGATACGTTACCGTCA 383
Query 420 CATGCAACAACAGGAACAACAACAACATTTCCACTTCACGACGGCGCGTGGACTCGTCTC 479
|||| | | | |||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 384 CATG---C-A-A-GAACAAGAACAACATCTCCAATTCACGACGGCGCGTGGACTCGTCTC 437
Query 480 CGGTCATTCTCTTTGGGCCCATTTCGTGTTTCCTCAACTCAATGCTGTTCCTGAAGGAAA 539
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 438 CGGCCATTCTCTGTGGGCCCATTTCGTGTTTCCTCAACTCAATGCTGTTCCCGAAGGAAA 497
Query 540 CAATCAAGGCTCTCTTGTCATTATGAACTTAGAACCCACCGTCTCTTCCTCAACTCTCCG 599
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 498 CAATCAAGGCTCACTTGTGATTATGAACTTAGAACCCACCGTCTCTTCCACAACTCTCCG 557
Query 600 TCACATTTTCCAAGTTTATGGAGAAGTGAAGCAGGTGAGAGAGACGCCGTGTAAGAGAGA 659
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 558 TCACATTTTCCAAGTTTATGGAGAAGTGAAGCAAGTGAGAGAGACACCGTATAAGAGAGA 617
Query 660 ACAAAGATTTGTGGAGTTTTTTGACGTTAGAGACGCTGCAAAAGCTCTCCGTGTAATGAA 719
||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 618 ACAGAGATTCGTTGAGTTCTTTGACGTTAGAGACGCCGCAAAAGCTCTTCGTGTAATGAA 677
Query 720 CGGAAAAGTTATCTCCGGTAAACCAATGGTTATCCAGTTTAGTCGTCCCGGTGGTTTAAC 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 678 CGGAAAAGTTATCTCCGGTAAACCAATGGTTATCCAGTTTAGCCGTCCCGGTGGTTTAAC 737
Query 780 CAAGAAACTCTTCTTCGCTTCACACTTCCATAAAAACTTCATCTTTAACAACGAAC-ACC 838
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 738 AAAGAAACTCTTCCTCGCTTCACGCTTCCATAAAAACTTCATCTTTAACAAC-AACCACC 796
Query 839 AT-TATTATCCACCGCCACCACCACCATCACGAATGGTGAAGTCGGATATTCTAATGTAC 897
| ||| |||| ||||| |||||||| || ||||||||| | ||| || |||||||
Sbjct 797 -TCTATCATCCGCCGCCGCCACCACC-----GA-TGGTGAAGTTGAATAATCAAATGTAC 849
Query 898 AAGCAACAAC--AA-aa---------gaagaagaagaagaag-t-atg---t--a-aa-g 936
||||||||| || || |||||||||||||||| | | | | | || |
Sbjct 850 GAGCAACAACGGAAGAACAATAACAAGAAGAAGAAGAAGAAGCTTAAGAAGTTTATAAAG 909
Query 937 aagaaTCTTGGT--GATCCTTATTTCATGATAAACGAAAACGCTATCACCGGCGGAGAGT 994
||||||| ||| ||| || | ||||| ||||||| |||||||||| ||||||| ||||
Sbjct 910 AAGAATC--GGTTTGATGCTCACTTCATAATAAACGCAAACGCTATCGCCGGCGGCGAGT 967
Query 995 TCAGAGACGGAAGAACCACCGTGATGATCAAGAACATCCCTAACAAGTACACACAGAAGC 1054
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 968 TCAGAGACGGAAGAACCACCGTGATGATCAAGAACATCCCAAACAAGTACACACAGAAGC 1027
Query 1055 TGCTTTTGAAGATGTTGGACACACATTGTAAAGATTGTAACCAAA-GTGTAATCAAAGAA 1113
|||||||||| |||||||||||||||||||| || |||||||||| | ||||||||||||
Sbjct 1028 TGCTTTTGAATATGTTGGACACACATTGTAACGACTGTAACCAAAAG-GTAATCAAAGAA 1086
Query 1114 GGGAACAAAACTCCTATGTCTTCTTATGACTTTGTCTACCTCCCCATTGATTTCAGCAAC 1173
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1087 GGGAACAAAACTCCTATGTCTTCTTATGACTTTGTCTATCTCCCGATTGATTTCAGCAAC 1146
Query 1174 AAAAGCAATGTGGGATATGGGTTTGTGAACATGACATCACCAGAAGCAGTGTGGAGACTT 1233
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1147 AAATGCAATGTGGGATATGGGTTTGTGAATATGACATCACCAGAAGCAGTGTGGAGACTT 1206
Query 1234 TACAAGAGCTTTCACAATCAACATTGGAGAGATTTCACCACCACTAGAAAGATCTGTGAG 1293
||||||| |||||| |||||||||||| ||||||||| || |||||||||||||||||
Sbjct 1207 TACAAGACCTTTCATAATCAACATTGGGGAGATTTCA--AC-ACTAGAAAGATCTGTGAA 1263
Query 1294 GTCACTTATGCTCGTATCCAGGGTCTTGAGTCATTAAGGGAACATTTCAAGAACGTTAGG 1353
|||||||||||||| ||||||||||||||||| |||| | ||||||||||||||| |
Sbjct 1264 GTCACTTATGCTCGAATCCAGGGTCTTGAGTCGTTAAAGAAACATTTCAAGAACGCAAAA 1323
Query 1354 CTAGC-AGGAGTAGAGATAGACGAGTACATGCCGGTTGTTTTCTCGCCGCCGCGTGATGG 1412
||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CTA-CTAGGAGTAGAGATGGAGGAGTACATGCCGGTTGTTTTCTCGCCGCCGCGTGATGG 1382
Query 1413 ACGGTTGTCACCGGA-GCCTGTGGCTATTGTTGACCCTTGGGATAAACCAGTGGATGAT- 1470
|||||||| || ||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct 1383 ACGGTTGTTAC-GGAAGCCTGTAGCCATTGTTGACCCTTGGGATAAACCGGTGGCTGATC 1441
Query 1471 --GAAGACAGATGTTGTA--AG-TCACGAGACGGGTTTGTTGTGTCCGACAAGAAGATGG 1525
|||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 1442 ATGAAGACAGCTGTTGTAGTAACTCACGAGAAGGGTTTGTTGTGTCCGACAAGAAGATGG 1501
Query 1526 TAGGAAGTGATGGTTGTGGTTTTTGTCTTAGTGAGAGAATCGAAAACGGCGGCGTTTGA 1584
|||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 1502 AAGGAAGTGATGGTTGTAGTTGTTGTCTTGGTGAGAGAATCGAAACCGGCGGCGTTTGA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5