BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G67770.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1 1845 0.0 > Ahg475881 jgi|Araly1|475881|fgenesh2_kg.2__1011__AT1G67770.1 Length=1560 Score = 1845 bits (999), Expect = 0.0 Identities = 1428/1619 (88%), Gaps = 94/1619 (6%) Strand=Plus/Plus Query 1 ATGTCTGTCACCGGACCATTCAGTCACCCAACAAACCTTAACCCAACAGCTCCGGCGTTC 60 ||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1 ATGTCAGTAACCGGACCATTCAGTCACCCAAGAAACCTTAACCCAACAGCTCCGGAGTTC 60 Query 61 TTTCCGGCGATAAACCAACACCAAAACCAAAACCCCTCCTTAATTCCGACAAGATTCTtc 120 || |||||| | | |||||||||||||| ||| |||||||||||| | Sbjct 61 TTCCCGGCG----------A-C-AAACCAAAACCCCTTCTTTATTCCGACAAGA----T- 103 Query 121 ctccctcatccccctcctcctcctcctcctccgccgccgccgctatacttttcttatttc 180 | || | ||| | ||||| |||||| || |||||| ||| |||||| ||| Sbjct 104 -T--CT-A----CCT-C-CCTCCGCCTCCT---CCTCCGCCG---TACCTTTCTT-TTT- 145 Query 181 tctctccctcctcctcctcctcctcctcATCTTCCACCGACTTCAGTAACACCAACCAGA 240 || ||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 146 TCCCTCTC-CCTCCTCCTCCTCCTCCTCATCTTCCACCGACTTCAATAACACCGACCAGA 204 Query 241 GCCGTGATGTTATTACAAGTCCCAGCT-ACCGTCACTGAGACATCTCTAAGACGAGACAT 299 |||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||| Sbjct 205 GCCGTGATGTTATTACCAGTCCCAGCTGA-CGTCACCGAGACATCTCTAAGACGAGACAT 263 Query 300 GGAACTATTCGGTGAAGTCCGTGGAGTCCAAATGGAAAGAGCACATGAAGGAATCGTGAT 359 |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 264 GGAACTGTTCGGTGAAGTCCGTGGAGTCCAAATGGAAAGAGTAGATGAAGGAATCGTGAC 323 Query 360 TTTCCATTTCTACAATCTAATAAACTCACAAAGAGCTTTTAACGAGATACGTTACCGTCA 419 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 324 CGTCCATTTCTACAATCTAAGAAACTCACAAAGAGCTTTGAACGAGATACGTTACCGTCA 383 Query 420 CATGCAACAACAGGAACAACAACAACATTTCCACTTCACGACGGCGCGTGGACTCGTCTC 479 |||| | | | |||||| |||||||| |||| |||||||||||||||||||||||||| Sbjct 384 CATG---C-A-A-GAACAAGAACAACATCTCCAATTCACGACGGCGCGTGGACTCGTCTC 437 Query 480 CGGTCATTCTCTTTGGGCCCATTTCGTGTTTCCTCAACTCAATGCTGTTCCTGAAGGAAA 539 ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 438 CGGCCATTCTCTGTGGGCCCATTTCGTGTTTCCTCAACTCAATGCTGTTCCCGAAGGAAA 497 Query 540 CAATCAAGGCTCTCTTGTCATTATGAACTTAGAACCCACCGTCTCTTCCTCAACTCTCCG 599 |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 498 CAATCAAGGCTCACTTGTGATTATGAACTTAGAACCCACCGTCTCTTCCACAACTCTCCG 557 Query 600 TCACATTTTCCAAGTTTATGGAGAAGTGAAGCAGGTGAGAGAGACGCCGTGTAAGAGAGA 659 ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| Sbjct 558 TCACATTTTCCAAGTTTATGGAGAAGTGAAGCAAGTGAGAGAGACACCGTATAAGAGAGA 617 Query 660 ACAAAGATTTGTGGAGTTTTTTGACGTTAGAGACGCTGCAAAAGCTCTCCGTGTAATGAA 719 ||| ||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 618 ACAGAGATTCGTTGAGTTCTTTGACGTTAGAGACGCCGCAAAAGCTCTTCGTGTAATGAA 677 Query 720 CGGAAAAGTTATCTCCGGTAAACCAATGGTTATCCAGTTTAGTCGTCCCGGTGGTTTAAC 779 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 678 CGGAAAAGTTATCTCCGGTAAACCAATGGTTATCCAGTTTAGCCGTCCCGGTGGTTTAAC 737 Query 780 CAAGAAACTCTTCTTCGCTTCACACTTCCATAAAAACTTCATCTTTAACAACGAAC-ACC 838 |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||| Sbjct 738 AAAGAAACTCTTCCTCGCTTCACGCTTCCATAAAAACTTCATCTTTAACAAC-AACCACC 796 Query 839 AT-TATTATCCACCGCCACCACCACCATCACGAATGGTGAAGTCGGATATTCTAATGTAC 897 | ||| |||| ||||| |||||||| || ||||||||| | ||| || ||||||| Sbjct 797 -TCTATCATCCGCCGCCGCCACCACC-----GA-TGGTGAAGTTGAATAATCAAATGTAC 849 Query 898 AAGCAACAAC--AA-aa---------gaagaagaagaagaag-t-atg---t--a-aa-g 936 ||||||||| || || |||||||||||||||| | | | | | || | Sbjct 850 GAGCAACAACGGAAGAACAATAACAAGAAGAAGAAGAAGAAGCTTAAGAAGTTTATAAAG 909 Query 937 aagaaTCTTGGT--GATCCTTATTTCATGATAAACGAAAACGCTATCACCGGCGGAGAGT 994 ||||||| ||| ||| || | ||||| ||||||| |||||||||| ||||||| |||| Sbjct 910 AAGAATC--GGTTTGATGCTCACTTCATAATAAACGCAAACGCTATCGCCGGCGGCGAGT 967 Query 995 TCAGAGACGGAAGAACCACCGTGATGATCAAGAACATCCCTAACAAGTACACACAGAAGC 1054 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 968 TCAGAGACGGAAGAACCACCGTGATGATCAAGAACATCCCAAACAAGTACACACAGAAGC 1027 Query 1055 TGCTTTTGAAGATGTTGGACACACATTGTAAAGATTGTAACCAAA-GTGTAATCAAAGAA 1113 |||||||||| |||||||||||||||||||| || |||||||||| | |||||||||||| Sbjct 1028 TGCTTTTGAATATGTTGGACACACATTGTAACGACTGTAACCAAAAG-GTAATCAAAGAA 1086 Query 1114 GGGAACAAAACTCCTATGTCTTCTTATGACTTTGTCTACCTCCCCATTGATTTCAGCAAC 1173 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1087 GGGAACAAAACTCCTATGTCTTCTTATGACTTTGTCTATCTCCCGATTGATTTCAGCAAC 1146 Query 1174 AAAAGCAATGTGGGATATGGGTTTGTGAACATGACATCACCAGAAGCAGTGTGGAGACTT 1233 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1147 AAATGCAATGTGGGATATGGGTTTGTGAATATGACATCACCAGAAGCAGTGTGGAGACTT 1206 Query 1234 TACAAGAGCTTTCACAATCAACATTGGAGAGATTTCACCACCACTAGAAAGATCTGTGAG 1293 ||||||| |||||| |||||||||||| ||||||||| || ||||||||||||||||| Sbjct 1207 TACAAGACCTTTCATAATCAACATTGGGGAGATTTCA--AC-ACTAGAAAGATCTGTGAA 1263 Query 1294 GTCACTTATGCTCGTATCCAGGGTCTTGAGTCATTAAGGGAACATTTCAAGAACGTTAGG 1353 |||||||||||||| ||||||||||||||||| |||| | ||||||||||||||| | Sbjct 1264 GTCACTTATGCTCGAATCCAGGGTCTTGAGTCGTTAAAGAAACATTTCAAGAACGCAAAA 1323 Query 1354 CTAGC-AGGAGTAGAGATAGACGAGTACATGCCGGTTGTTTTCTCGCCGCCGCGTGATGG 1412 ||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1324 CTA-CTAGGAGTAGAGATGGAGGAGTACATGCCGGTTGTTTTCTCGCCGCCGCGTGATGG 1382 Query 1413 ACGGTTGTCACCGGA-GCCTGTGGCTATTGTTGACCCTTGGGATAAACCAGTGGATGAT- 1470 |||||||| || ||| |||||| || ||||||||||||||||||||||| |||| |||| Sbjct 1383 ACGGTTGTTAC-GGAAGCCTGTAGCCATTGTTGACCCTTGGGATAAACCGGTGGCTGATC 1441 Query 1471 --GAAGACAGATGTTGTA--AG-TCACGAGACGGGTTTGTTGTGTCCGACAAGAAGATGG 1525 |||||||| ||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 1442 ATGAAGACAGCTGTTGTAGTAACTCACGAGAAGGGTTTGTTGTGTCCGACAAGAAGATGG 1501 Query 1526 TAGGAAGTGATGGTTGTGGTTTTTGTCTTAGTGAGAGAATCGAAAACGGCGGCGTTTGA 1584 |||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||| Sbjct 1502 AAGGAAGTGATGGTTGTAGTTGTTGTCTTGGTGAGAGAATCGAAACCGGCGGCGTTTGA 1560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5